Plp1 (proteolipid protein 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Plp1 (proteolipid protein 1) Chinchilla lanigera
Analyze
Symbol: Plp1
Name: proteolipid protein 1
RGD ID: 9045561
Description: ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); structural constituent of myelin sheath (ortholog); INVOLVED IN AMPA selective glutamate receptor signaling pathway (ortholog); astrocyte development (ortholog); axon development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Chronic Relapsing Experimental Autoimmune Encephalomyelitis (ortholog); demyelinating disease (ortholog); FOUND IN integrin alphav-beta3 complex (ortholog); myelin sheath (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955548781,015 - 797,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955548781,522 - 797,246 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Plp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955548781,015 - 797,935 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955548781,522 - 797,246 (+)NCBIChiLan1.0ChiLan1.0
PLP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX103,773,718 - 103,792,619 (+)EnsemblGRCh38hg38GRCh38
GRCh38X103,776,506 - 103,792,619 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X103,031,434 - 103,047,548 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37X103,031,439 - 103,047,548 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,918,410 - 102,934,204 (+)NCBINCBI36hg18NCBI36
Build 34X102,837,898 - 102,853,690NCBI
CeleraX103,470,449 - 103,486,558 (+)NCBI
Cytogenetic MapXq22.2NCBI
HuRefX92,687,547 - 92,703,609 (+)NCBIHuRef
CHM1_1X102,924,421 - 102,940,535 (+)NCBICHM1_1
Plp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,720,897 - 135,739,331 (+)NCBIGRCm39mm39
GRCm38X136,820,148 - 136,838,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,822,671 - 136,839,733 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X133,357,375 - 133,372,282 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X132,169,200 - 132,184,107 (+)NCBImm8
CeleraX120,104,727 - 120,119,592 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX59.1NCBI
Plp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X100,184,039 - 100,201,035 (+)NCBI
Rnor_6.0 EnsemblX107,496,072 - 107,511,348 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0X107,494,326 - 107,511,355 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X107,379,831 - 107,394,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X124,488,627 - 124,503,639 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X124,562,059 - 124,577,072 (+)NCBI
CeleraX101,020,110 - 101,035,276 (+)NCBICelera
Cytogenetic MapXq32NCBI
PLP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X103,353,181 - 103,412,513 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX103,353,184 - 103,412,513 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X93,015,098 - 93,031,193 (+)NCBIMhudiblu_PPA_v0panPan3
PLP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX77,191,150 - 77,205,964 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X77,191,112 - 77,207,772 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Plp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649910,534,953 - 10,553,411 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX84,665,925 - 84,695,533 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X84,676,627 - 84,683,517 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,648,731 - 98,655,621 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X91,671,535 - 91,687,693 (+)NCBI
ChlSab1.1 EnsemblX91,671,878 - 91,687,878 (+)Ensembl
Plp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624954135,065 - 150,911 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000000413   ⟹   ENSCLAP00000000385
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955548781,015 - 797,935 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000000414   ⟹   ENSCLAP00000000386
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955548789,740 - 795,252 (+)Ensembl
RefSeq Acc Id: XM_005411997   ⟹   XP_005412054
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955548781,522 - 797,246 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005411998   ⟹   XP_005412055
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955548781,522 - 797,246 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005412054 (Get FASTA)   NCBI Sequence Viewer  
  XP_005412055 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005412054   ⟸   XM_005411997
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005412055   ⟸   XM_005411998
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000000385   ⟸   ENSCLAT00000000413
RefSeq Acc Id: ENSCLAP00000000386   ⟸   ENSCLAT00000000414


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000325 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000000385 ENTREZGENE
Ensembl Transcript ENSCLAT00000000413 ENTREZGENE
NCBI Gene Plp1 ENTREZGENE