Bgn (biglycan) - Rat Genome Database

Name: Bgn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Bgn (biglycan) Chinchilla lanigera

Analyze

Symbol:

Bgn

Name:

biglycan

RGD ID:

9045173

Description:

ENCODES a protein that exhibits cytokine binding (ortholog); extracellular matrix binding (ortholog); glycosaminoglycan binding (ortholog); INVOLVED IN articular cartilage development (ortholog); blood vessel remodeling (ortholog); bone development (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); aortic disease (ortholog); autistic disorder (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); sarcolemma (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BGN (biglycan)	NCBI	Ortholog
Mus musculus (house mouse):	Bgn (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Bgn (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BGN (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BGN (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bgn (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BGN (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BGN (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bgn (biglycan)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955580	252,139 - 263,663 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955580	252,183 - 263,179 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adrenoleukodystrophy (ISO)

aortic disease (ISO)

autistic disorder (ISO)

Barth syndrome (ISO)

Breast Neoplasms (ISO)

cerebral creatine deficiency syndrome 1 (ISO)

Disease Progression (ISO)

dyskeratosis congenita (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

Experimental Liver Cirrhosis (ISO)

Experimental Mammary Neoplasms (ISO)

favism (ISO)

genetic disease (ISO)

immunodeficiency 33 (ISO)

Meester-Loeys syndrome (ISO)

paraplegia (ISO)

periventricular nodular heterotopia (ISO)

rheumatoid arthritis (ISO)

Splenomegaly (ISO)

stomach cancer (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

thoracic aortic aneurysm (ISO)

X-linked spondyloepimetaphyseal dysplasia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

articular cartilage development (ISO)

blood vessel remodeling (ISO)

bone development (ISO)

Cellular Component

cell surface (ISO)

extracellular matrix (ISO)

sarcolemma (ISO)

transport vesicle (ISO)

Molecular Function

cytokine binding (ISO)

extracellular matrix binding (ISO)

glycosaminoglycan binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Bgn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955580	252,139 - 263,663 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955580	252,183 - 263,179 (+)	NCBI	ChiLan1.0	ChiLan1.0

BGN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	153,494,980 - 153,509,546 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	153,494,980 - 153,509,546 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	152,760,438 - 152,775,004 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	152,413,605 - 152,428,198 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	152,281,257 - 152,295,851	NCBI
Celera	X	152,994,048 - 153,008,701 (+)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	141,428,414 - 141,433,357 (+)	NCBI		HuRef
CHM1_1	X	152,634,856 - 152,649,511 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	151,768,553 - 151,783,109 (+)	NCBI		T2T-CHM13v2.0

Bgn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	72,527,207 - 72,539,542 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	72,527,208 - 72,539,539 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	73,483,601 - 73,495,936 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	73,483,602 - 73,495,933 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	70,728,974 - 70,741,275 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	69,736,364 - 69,748,651 (+)	NCBI		MGSCv36	mm8
Celera	X	64,737,508 - 64,749,795 (+)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.33	NCBI

Bgn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	156,348,633 - 156,360,797 (+)	NCBI		GRCr8
mRatBN7.2	X	151,197,296 - 151,209,458 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	151,197,273 - 151,209,461 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	153,338,436 - 153,350,608 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	156,901,667 - 156,913,844 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	154,573,498 - 154,585,670 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	157,319,042 - 157,331,204 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	157,319,046 - 157,331,204 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	153,067,990 - 153,080,152 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	159,380,557 - 159,393,409 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	X	159,453,989 - 159,466,841 (+)	NCBI
Celera	1	136,680,181 - 136,692,331 (-)	NCBI		Celera
Cytogenetic Map	X	q37	NCBI

BGN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	153,534,986 - 153,549,745 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	153,538,710 - 153,553,349 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	143,045,298 - 143,059,892 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	152,931,608 - 152,946,292 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	152,931,608 - 152,946,292 (+)	Ensembl	panpan1.1		panPan2

BGN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	121,330,371 - 121,334,634 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	121,330,259 - 121,334,634 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	106,652,078 - 106,665,354 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	124,463,956 - 124,477,899 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	124,463,911 - 124,477,891 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	120,233,690 - 120,246,965 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	122,748,802 - 122,762,079 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	122,510,823 - 122,524,101 (+)	NCBI		UU_Cfam_GSD_1.0

Bgn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	118,637,802 - 118,651,947 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936809	375,543 - 389,756 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936809	375,589 - 389,718 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BGN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	124,275,305 - 124,295,445 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	124,282,048 - 124,295,450 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	141,845,604 - 141,858,856 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BGN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	127,926,018 - 127,940,485 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	127,926,009 - 127,941,164 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	65,787,635 - 65,802,224 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bgn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624946	230,519 - 241,850 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624946	230,529 - 241,448 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005414120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005414121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01075593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01004164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000004352 ⟹ ENSCLAP00000004270

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955580	252,139 - 263,663 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000004353 ⟹ ENSCLAP00000004271

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955580	252,216 - 263,663 (+)	Ensembl

RefSeq Acc Id:

XM_005414120 ⟹ XP_005414177

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955580	252,183 - 263,179 (+)	NCBI

Sequence:

show sequence

CGCCTCTTCTCCCTCTCTCCTCCAACTGCCCAGGAGTGAGCAGCTGCTCCCGGCCGGCCCTGCC
TGACGGACAGACACAGCAGACACACGGACAGCCCCAAGCCCACCAACTGGCCAGTCCGCACCTG
GCTGCTTCCCTGCAGGCTCGTGCACCATGCAGCCCCTGTGGCTCCTGGCAGCCCTGCTGGCGCT
GGGCCAGGCCCTGCCCTTTGAGCAGAAGGGCTTCTGGGACTTCGCCCTGGATGACGGGCTGTTC
ATGAATGATGAGGAGGCTTCAGGTGTCGACAGCACTTCTGGAGCCCCAGACATGGACTCCGTGA
CACCCACCTACAGCGCCATATGTCCTTTTGGCTGCCACTGCCACCTGCGAGTTGTTCAGTGCTC
GGACCTGGGTCTGAAGAACGTGCCCAAGGAGATTTCCCCAGACACCACGCTGCTGGACCTGCAG
AACAACGACATCTCTGAGCTCCGCAAGGATGACTTCAAAGGCCTCCAGCACCTCTACGCCCTCG
TCCTGGTGAACAACAAGATCTCCAAGATCCATGAGAAGGCCTTCAGCCCCCTGCGAAAGCTGCA
GAAGCTGTACATCTCCAAGAACCATCTGGTGGAGATCCCGCCCAACCTGCCCAGCTCCCTGGTG
GAGCTGCGCATCCACGACAACCGCATCCGGAAAGTGCCCAAGGGCGTATTCAGCGGGCTCCGAA
ACATGAACTGCATCGAGATGGGCGGGAACCCCTTGGAGAACAGCGGCTTTGAACCTGGAGCCTT
CGATGGCCTGAAGCTCAACTACCTGCGCATCTCTGAGGCCAAGCTCACCGGTATCCCCAAAGAC
CTCCCCGAGACACTGAATGAGCTCCATCTGGACCACAACAAAATCCAGGCTATCGAGCTAGAGG
ACCTGCTGCGCTACTCCAAGCTGTACAGGCTCGGCCTGGGCCACAACCAAATCCGAATGATCGA
GAACGGGAGCCTGAGTTTCCTGCCTACCCTGCGGGAGCTGCACTTGAACAACAACAAGCTGTCC
CGGGTGCCTGCCGGGCTTCCTGACCTCAAGCTCCTCCAGGTGGTCTACTTGCACTCCAACAACA
TCACCAAAGTGGGCGTCAATGACTTCTGTCCCATGGGCTTCGGCGTCAAGCGGGCCTACTACAA
TGGCATCAGCCTGTTCCACAACCCTGTGCCCTATTGGGAGGTGCAGCCGGCCACCTTCCGCTGT
GTCACCGACCGCCTGGCCATCCAGTTTGGCAACTACAAGAAGTAGAGGCAGTGGCAACCACCAC
AGGGAACAGAGCCCGCTGTCCTGGAGGGCGCTGAGTGAAGAGTGCAGCCCCTCACCTGTGCTCC
CCTGCCCCAAGTCCCTGCCTTCCCTGGCTCCCAAGCGTGCAGGTGGATTCAGGGCCTGGCCCTG
TCACTTGTACCCTTGGCTTCAGAGCTGCCCTGCTTACCCACTGTGGCCACTCAGAGGCACCCCT
GAGAAGCTTTTTTCTTGTTCACCCTGAAACCCCACCCTTAGTGAACCGGCCCGTGGGTGTGTGG
CGAGGGGCGTCGGTAGGGACGGAGACAGGGGTTCCCTGCCCGGGCTCATGTTCCTTCTCCTCCT
CACCTGTCCCAGCCTCCAGGGCCCCCGGCCTTCGGGGCGCCCGCTTCACCAAGCTCACGGCTTG
TCTGTCACAGCCAGCCCCGTCTCCCTGTCCCTCTCCCCTTCCATCTATCGTGCTTCCTGATGTA
TTTCTCCCTTTGGGGCTCCGTGACCTGCTTACTCCTGGACCTGGATTTGTTTTTGTTGTTGTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCT

hide sequence

RefSeq Acc Id:

XM_005414121 ⟹ XP_005414178

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955580	252,183 - 263,179 (+)	NCBI

Sequence:

show sequence

CGCCTCTTCTCCCTCTCTCCTCCAACTGCCCAGGAGTGAGCAGCTGCTCCCGGCCGGCCCTGCC
TGACGGACAGACACAGCAGACACACGGACAGCCCCAAGCCCACCAACTGGCCAGTCCGCACCTG
GCTGCTTCCCTGCAGGGCAGCTGAGCTGAAACTGAGGCTAAAGGGCAGGGCTCCTCTCTGCACC
CCTCTCTGAGACACCCCCACTGTGACATCAGACACAGCTGCTCAAGGGTCCTTGACCCCAAGGC
TCGTGCACCATGCAGCCCCTGTGGCTCCTGGCAGCCCTGCTGGCGCTGGGCCAGGCCCTGCCCT
TTGAGCAGAAGGGCTTCTGGGACTTCGCCCTGGATGACGGGCTGTTCATGAATGATGAGGAGGC
TTCAGGTGTCGACAGCACTTCTGGAGCCCCAGACATGGACTCCGTGACACCCACCTACAGCGCC
ATATGTCCTTTTGGCTGCCACTGCCACCTGCGAGTTGTTCAGTGCTCGGACCTGGGTCTGAAGA
ACGTGCCCAAGGAGATTTCCCCAGACACCACGCTGCTGGACCTGCAGAACAACGACATCTCTGA
GCTCCGCAAGGATGACTTCAAAGGCCTCCAGCACCTCTACGCCCTCGTCCTGGTGAACAACAAG
ATCTCCAAGATCCATGAGAAGGCCTTCAGCCCCCTGCGAAAGCTGCAGAAGCTGTACATCTCCA
AGAACCATCTGGTGGAGATCCCGCCCAACCTGCCCAGCTCCCTGGTGGAGCTGCGCATCCACGA
CAACCGCATCCGGAAAGTGCCCAAGGGCGTATTCAGCGGGCTCCGAAACATGAACTGCATCGAG
ATGGGCGGGAACCCCTTGGAGAACAGCGGCTTTGAACCTGGAGCCTTCGATGGCCTGAAGCTCA
ACTACCTGCGCATCTCTGAGGCCAAGCTCACCGGTATCCCCAAAGACCTCCCCGAGACACTGAA
TGAGCTCCATCTGGACCACAACAAAATCCAGGCTATCGAGCTAGAGGACCTGCTGCGCTACTCC
AAGCTGTACAGGCTCGGCCTGGGCCACAACCAAATCCGAATGATCGAGAACGGGAGCCTGAGTT
TCCTGCCTACCCTGCGGGAGCTGCACTTGAACAACAACAAGCTGTCCCGGGTGCCTGCCGGGCT
TCCTGACCTCAAGCTCCTCCAGGTGGTCTACTTGCACTCCAACAACATCACCAAAGTGGGCGTC
AATGACTTCTGTCCCATGGGCTTCGGCGTCAAGCGGGCCTACTACAATGGCATCAGCCTGTTCC
ACAACCCTGTGCCCTATTGGGAGGTGCAGCCGGCCACCTTCCGCTGTGTCACCGACCGCCTGGC
CATCCAGTTTGGCAACTACAAGAAGTAGAGGCAGTGGCAACCACCACAGGGAACAGAGCCCGCT
GTCCTGGAGGGCGCTGAGTGAAGAGTGCAGCCCCTCACCTGTGCTCCCCTGCCCCAAGTCCCTG
CCTTCCCTGGCTCCCAAGCGTGCAGGTGGATTCAGGGCCTGGCCCTGTCACTTGTACCCTTGGC
TTCAGAGCTGCCCTGCTTACCCACTGTGGCCACTCAGAGGCACCCCTGAGAAGCTTTTTTCTTG
TTCACCCTGAAACCCCACCCTTAGTGAACCGGCCCGTGGGTGTGTGGCGAGGGGCGTCGGTAGG
GACGGAGACAGGGGTTCCCTGCCCGGGCTCATGTTCCTTCTCCTCCTCACCTGTCCCAGCCTCC
AGGGCCCCCGGCCTTCGGGGCGCCCGCTTCACCAAGCTCACGGCTTGTCTGTCACAGCCAGCCC
CGTCTCCCTGTCCCTCTCCCCTTCCATCTATCGTGCTTCCTGATGTATTTCTCCCTTTGGGGCT
CCGTGACCTGCTTACTCCTGGACCTGGATTTGTTTTTGTTGTTGTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005414177	(Get FASTA)	NCBI Sequence Viewer
	XP_005414178	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000004270
	ENSCLAP00000004270.1
	ENSCLAP00000004271
	ENSCLAP00000004271.1

RefSeq Acc Id:

XP_005414178 ⟸ XM_005414121

- UniProtKB:

A0A8C2YK02 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQPLWLLAALLALGQALPFEQKGFWDFALDDGLFMNDEEASGVDSTSGAPDMDSVTPTYSAICP
FGCHCHLRVVQCSDLGLKNVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK
IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG
NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY
RLGLGHNQIRMIENGSLSFLPTLRELHLNNNKLSRVPAGLPDLKLLQVVYLHSNNITKVGVNDF
CPMGFGVKRAYYNGISLFHNPVPYWEVQPATFRCVTDRLAIQFGNYKK

hide sequence

RefSeq Acc Id:

XP_005414177 ⟸ XM_005414120

- UniProtKB:

A0A8C2YK02 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQPLWLLAALLALGQALPFEQKGFWDFALDDGLFMNDEEASGVDSTSGAPDMDSVTPTYSAICP
FGCHCHLRVVQCSDLGLKNVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK
IHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG
NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLY
RLGLGHNQIRMIENGSLSFLPTLRELHLNNNKLSRVPAGLPDLKLLQVVYLHSNNITKVGVNDF
CPMGFGVKRAYYNGISLFHNPVPYWEVQPATFRCVTDRLAIQFGNYKK

hide sequence

RefSeq Acc Id:

ENSCLAP00000004270 ⟸ ENSCLAT00000004352

RefSeq Acc Id:

ENSCLAP00000004271 ⟸ ENSCLAT00000004353

Protein Domains

LRRNT

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003040	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000004352	ENTREZGENE
	ENSCLAT00000004352.1	UniProtKB/TrEMBL
	ENSCLAT00000004353	ENTREZGENE
	ENSCLAT00000004353.1	UniProtKB/TrEMBL
Gene3D-CATH	3.80.10.10	UniProtKB/TrEMBL
InterPro	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
	SLRP_I_decor/aspor/byglycan	UniProtKB/TrEMBL
NCBI Gene	Bgn	ENTREZGENE
PANTHER	AGAP008170-PA	UniProtKB/TrEMBL
	PTHR45712:SF11	UniProtKB/TrEMBL
Pfam	LRR_8	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
PIRSF	SLRP_I	UniProtKB/TrEMBL
PROSITE	LRR	UniProtKB/TrEMBL
SMART	LRR_TYP	UniProtKB/TrEMBL
	LRRNT	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
UniProt	A0A8C2YK02	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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