Scap (SREBF chaperone) - Rat Genome Database

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Gene: Scap (SREBF chaperone) Chinchilla lanigera
Analyze
Symbol: Scap
Name: SREBF chaperone
RGD ID: 9044954
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN aging (ortholog); cellular lipid metabolic process (ortholog); cholesterol metabolic process (ortholog); PARTICIPATES IN sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); hepatocellular carcinoma (ortholog); Hypercholesterolemia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,813,534 - 24,869,480 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,813,683 - 24,869,602 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Scap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,813,534 - 24,869,480 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,813,683 - 24,869,602 (+)NCBIChiLan1.0ChiLan1.0
SCAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl347,413,681 - 47,477,126 (-)EnsemblGRCh38hg38GRCh38
GRCh38347,413,681 - 47,477,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37347,455,171 - 47,517,431 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,430,188 - 47,492,449 (-)NCBINCBI36hg18NCBI36
Celera347,393,823 - 47,458,772 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef347,498,135 - 47,563,088 (-)NCBIHuRef
CHM1_1347,405,412 - 47,467,423 (-)NCBICHM1_1
Scap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,162,356 - 110,214,017 (+)NCBIGRCm39mm39
GRCm39 Ensembl9110,162,356 - 110,214,018 (+)Ensembl
GRCm389110,333,288 - 110,384,949 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,333,288 - 110,384,950 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,235,797 - 110,287,450 (+)NCBIGRCm37mm9NCBIm37
MGSCv369110,178,523 - 110,230,113 (+)NCBImm8
Celera9110,062,305 - 110,113,905 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.91NCBI
Scap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28110,306,031 - 110,360,677 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8110,306,031 - 110,360,666 (+)Ensembl
Rnor_6.08118,551,869 - 118,628,650 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,570,503 - 118,628,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,895,671 - 117,972,292 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,706,479 - 114,761,342 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18114,725,918 - 114,780,799 (+)NCBI
Celera8109,591,567 - 109,646,089 (+)NCBICelera
Cytogenetic Map8q32NCBI
SCAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1348,414,012 - 48,446,721 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,414,012 - 48,479,845 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0347,314,535 - 47,379,455 (-)NCBIMhudiblu_PPA_v0panPan3
SCAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,418,507 - 41,485,681 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,418,536 - 41,487,024 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,335,033 - 41,402,084 (+)NCBI
ROS_Cfam_1.02041,901,526 - 41,968,598 (+)NCBI
UMICH_Zoey_3.12041,143,535 - 41,210,564 (+)NCBI
UNSW_CanFamBas_1.02041,544,714 - 41,611,716 (+)NCBI
UU_Cfam_GSD_1.02041,825,295 - 41,892,343 (+)NCBI
LOC101970674
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,575,434 - 201,631,109 (-)NCBI
SpeTri2.0NW_0049365961,124,573 - 1,180,219 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,253,268 - 30,320,526 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,253,262 - 30,320,625 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21333,483,930 - 33,551,346 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103227563
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,821,809 - 8,887,538 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl228,818,980 - 8,850,202 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041158,240,615 - 158,318,574 (+)NCBIVero_WHO_p1.0
Scap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473073,926,978 - 73,975,337 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000022844   ⟹   ENSCLAP00000022636
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542024,813,534 - 24,865,901 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000022845   ⟹   ENSCLAP00000022637
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542024,837,596 - 24,869,480 (+)Ensembl
RefSeq Acc Id: XM_013513390   ⟹   XP_013368844
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542024,813,683 - 24,869,602 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013368844 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013368844   ⟸   XM_013513390
- Sequence:
RefSeq Acc Id: ENSCLAP00000022637   ⟸   ENSCLAT00000022845
RefSeq Acc Id: ENSCLAP00000022636   ⟸   ENSCLAT00000022844


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015521 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000022637 ENTREZGENE
Ensembl Transcript ENSCLAT00000022845 ENTREZGENE
NCBI Gene Scap ENTREZGENE