Ccdc146 (coiled-coil domain containing 146) - Rat Genome Database

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Gene: Ccdc146 (coiled-coil domain containing 146) Chinchilla lanigera
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Symbol: Ccdc146
Name: coiled-coil domain containing 146
RGD ID: 9044438
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN gene expression (ortholog); manchette assembly (ortholog); single fertilization (ortholog); ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); genetic disease (ortholog); male infertility (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); sperm connecting piece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 146
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,811,034 - 7,961,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,810,702 - 7,925,844 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccdc146
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,811,034 - 7,961,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,810,702 - 7,925,844 (-)NCBIChiLan1.0ChiLan1.0
CCDC146
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38777,122,615 - 77,295,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl777,122,434 - 77,329,533 (+)EnsemblGRCh38hg38GRCh38
GRCh37776,751,932 - 76,924,521 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36776,589,870 - 76,762,457 (+)NCBINCBI36Build 36hg18NCBI36
Celera771,497,691 - 71,625,151 (+)NCBICelera
Cytogenetic Map7q11.23NCBI
HuRef771,399,435 - 71,526,851 (+)NCBIHuRef
CHM1_1776,682,189 - 76,854,481 (+)NCBICHM1_1
T2T-CHM13v2.0778,373,727 - 78,546,266 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,084,997 - 76,257,584 (+)NCBI
Ccdc146
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39521,496,749 - 21,629,675 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl521,497,959 - 21,629,675 (-)EnsemblGRCm39 Ensembl
GRCm38521,292,422 - 21,424,677 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl521,292,961 - 21,424,677 (-)EnsemblGRCm38mm10GRCm38
MGSCv37520,798,779 - 20,930,495 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36520,331,135 - 20,400,919 (-)NCBIMGSCv36mm8
Celera518,256,333 - 18,388,433 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.83NCBI
Ccdc146
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8414,554,966 - 14,703,801 (+)NCBIGRCr8
mRatBN7.2413,662,766 - 13,811,619 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl413,662,766 - 13,811,608 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx418,790,248 - 18,942,337 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0414,599,535 - 14,744,372 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0412,975,890 - 13,127,983 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,269,798 - 10,421,724 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,295,122 - 10,421,415 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,265,819 - 10,414,946 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,233,108 - 9,304,850 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera49,228,536 - 9,375,127 (+)NCBICelera
Cytogenetic Map4q11NCBI
CCDC146
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2694,973,816 - 95,145,972 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17143,160,317 - 143,410,611 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0768,965,404 - 69,215,833 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1782,900,402 - 83,027,578 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl782,900,402 - 83,027,578 (+)Ensemblpanpan1.1panPan2
CCDC146
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,286,319 - 17,405,120 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,304,941 - 17,404,914 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1816,944,929 - 17,063,563 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01817,605,995 - 17,725,535 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1817,625,038 - 17,725,535 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,357,017 - 17,475,799 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,295,954 - 17,414,787 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01817,565,170 - 17,684,371 (+)NCBIUU_Cfam_GSD_1.0
Ccdc146
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511859,449,069 - 59,580,733 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647920,572,865 - 20,704,511 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647920,572,865 - 20,703,791 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC146
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9102,787,551 - 102,919,686 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19102,784,299 - 102,919,758 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29113,119,508 - 113,148,339 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC146
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12171,634,139 - 71,807,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2171,634,069 - 71,807,442 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604232,189,617 - 32,367,298 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc146
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,474,281 - 26,581,666 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473926,445,872 - 26,580,775 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000011297   ⟹   ENSCLAP00000011161
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554107,811,034 - 7,961,414 (-)Ensembl
RefSeq Acc Id: XM_013510513   ⟹   XP_013365967
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554107,810,702 - 7,925,844 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365967 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011161
  ENSCLAP00000011161.1
RefSeq Acc Id: XP_013365967   ⟸   XM_013510513
- UniProtKB: A0A8C2YN96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011161   ⟸   ENSCLAT00000011297


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007712 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011297 ENTREZGENE
  ENSCLAT00000011297.1 UniProtKB/TrEMBL
NCBI Gene Ccdc146 ENTREZGENE
PANTHER CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 146 UniProtKB/TrEMBL
UniProt A0A8C2YN96 ENTREZGENE, UniProtKB/TrEMBL