St3gal2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2) - Rat Genome Database

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Gene: St3gal2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2) Chinchilla lanigera
Analyze
Symbol: St3gal2
Name: ST3 beta-galactoside alpha-2,3-sialyltransferase 2
RGD ID: 9044218
Description: ENCODES a protein that exhibits beta-D-galactosyl-(1->3)-N-acetyl-beta-D-galactosaminide alpha-2,3- sialyltransferase (ortholog); beta-galactoside (CMP) alpha-2,3-sialyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN ganglioside biosynthetic process via lactosylceramide (ortholog); globoside biosynthetic process via lactosylceramide (ortholog); glycolipid biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); congenital disorder of glycosylation type IIj (ortholog); FOUND IN Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,177,104 - 3,230,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,176,214 - 3,230,433 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
St3gal2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,177,104 - 3,230,433 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554843,176,214 - 3,230,433 (-)NCBIChiLan1.0ChiLan1.0
ST3GAL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,375,977 - 70,439,100 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,375,977 - 70,439,237 (-)EnsemblGRCh38hg38GRCh38
GRCh371670,409,880 - 70,473,003 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361668,970,839 - 69,030,492 (-)NCBINCBI36Build 36hg18NCBI36
Build 341668,972,809 - 69,030,492NCBI
Celera1655,055,306 - 55,114,849 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,246,172 - 56,305,216 (-)NCBIHuRef
CHM1_11671,820,818 - 71,880,362 (-)NCBICHM1_1
T2T-CHM13v2.01676,187,004 - 76,250,128 (-)NCBIT2T-CHM13v2.0
St3gal2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,646,520 - 111,699,132 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,646,554 - 111,699,112 (+)EnsemblGRCm39 Ensembl
GRCm388110,919,743 - 110,974,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8110,919,922 - 110,972,480 (+)EnsemblGRCm38mm10GRCm38
MGSCv378113,443,765 - 113,496,397 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368113,806,599 - 113,858,234 (+)NCBIMGSCv36mm8
Celera8115,180,767 - 115,196,505 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.81NCBI
St3gal2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,798,112 - 55,849,226 (+)NCBIGRCr8
mRatBN7.21938,888,851 - 38,939,874 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,923,999 - 38,939,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1945,728,513 - 45,744,388 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,381,856 - 46,397,731 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,692,765 - 48,708,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,273,251 - 43,324,265 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,274,493 - 43,290,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,101,504 - 54,152,583 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41940,873,202 - 40,889,072 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11940,892,278 - 40,892,994 (-)NCBI
Celera1938,316,282 - 38,332,162 (+)NCBICelera
Cytogenetic Map19q12NCBI
ST3GAL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21883,726,255 - 83,789,200 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11689,655,506 - 89,715,192 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01654,577,578 - 54,637,626 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11670,218,738 - 70,240,162 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,218,748 - 70,240,162 (-)Ensemblpanpan1.1panPan2
ST3GAL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,377,782 - 76,427,998 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,379,702 - 76,394,525 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha576,339,604 - 76,389,857 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0576,814,457 - 76,864,970 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,796,878 - 76,864,417 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,636,437 - 76,687,020 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,459,670 - 76,510,167 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,951,528 - 77,002,224 (-)NCBIUU_Cfam_GSD_1.0
St3gal2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934936,385,195 - 36,439,669 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,149,487 - 23,205,027 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,149,452 - 23,203,919 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST3GAL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,402,345 - 13,419,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1613,402,336 - 13,456,495 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ST3GAL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,530,077 - 53,585,065 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,531,781 - 53,545,739 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604716,316,291 - 16,376,499 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St3gal2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,623,730 - 12,680,436 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474612,623,966 - 12,680,430 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007606   ⟹   ENSCLAP00000007489
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554843,177,104 - 3,230,433 (-)Ensembl
RefSeq Acc Id: XM_005403478   ⟹   XP_005403535
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554843,176,214 - 3,230,433 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403535 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000007489
  ENSCLAP00000007489.1
Reference Protein Sequences
RefSeq Acc Id: XP_005403535   ⟸   XM_005403478
- UniProtKB: A0A8C2UZ24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000007489   ⟸   ENSCLAT00000007606


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007606 ENTREZGENE
  ENSCLAT00000007606.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.1480.20 UniProtKB/TrEMBL
InterPro Glyco_trans_29 UniProtKB/TrEMBL
  GT29-like_sf UniProtKB/TrEMBL
  Sialyl_trans UniProtKB/TrEMBL
NCBI Gene St3gal2 ENTREZGENE
PANTHER ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1 UniProtKB/TrEMBL
  CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Glyco_transf_29 UniProtKB/TrEMBL
PIRSF Sialyl_trans UniProtKB/TrEMBL
UniProt A0A8C2UZ24 ENTREZGENE, UniProtKB/TrEMBL