Klf5 (Kruppel like factor 5) - Rat Genome Database

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Gene: Klf5 (Kruppel like factor 5) Chinchilla lanigera
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Symbol: Klf5
Name: Kruppel like factor 5
RGD ID: 9042742
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell signaling via exosome (ortholog); cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH adenoma (ortholog); Cardiomegaly (ortholog); chromosome 13q14 deletion syndrome (ortholog); FOUND IN Golgi apparatus (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Krueppel-like factor 5; Kruppel-like factor 5 (intestinal)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540433,644,077 - 33,658,094 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540433,642,604 - 33,665,445 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References


Genomics

Comparative Map Data
Klf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540433,644,077 - 33,658,094 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540433,642,604 - 33,665,445 (-)NCBIChiLan1.0ChiLan1.0
KLF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1373,054,976 - 73,077,541 (+)EnsemblGRCh38hg38GRCh38
GRCh381373,054,976 - 73,077,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371373,629,114 - 73,651,676 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361372,531,143 - 72,549,677 (+)NCBINCBI36hg18NCBI36
Build 341372,531,142 - 72,549,677NCBI
Celera1354,531,627 - 54,550,162 (+)NCBI
Cytogenetic Map13q22.1NCBI
HuRef1354,330,388 - 54,348,922 (+)NCBIHuRef
CHM1_11373,600,752 - 73,619,289 (+)NCBICHM1_1
Klf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391499,536,127 - 99,550,848 (+)NCBIGRCm39mm39
GRCm39 Ensembl1499,536,127 - 99,552,472 (+)Ensembl
GRCm381499,298,691 - 99,313,412 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1499,298,691 - 99,315,036 (+)EnsemblGRCm38mm10GRCm38
MGSCv371499,697,910 - 99,712,631 (+)NCBIGRCm37mm9NCBIm37
MGSCv361498,181,825 - 98,196,546 (+)NCBImm8
Celera1497,974,632 - 97,989,357 (+)NCBICelera
Cytogenetic Map14E2.2NCBI
Klf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21576,060,320 - 76,079,445 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1583,703,791 - 83,722,921 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01583,703,796 - 83,722,921 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01587,212,719 - 87,231,850 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41583,103,177 - 83,118,363 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11583,121,895 - 83,132,620 (+)NCBI
Celera1575,305,416 - 75,320,302 (+)NCBICelera
Cytogenetic Map15q21NCBI
KLF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11373,062,147 - 73,084,730 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01354,287,578 - 54,310,216 (+)NCBIMhudiblu_PPA_v0panPan3
KLF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12227,163,179 - 27,185,241 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2227,162,397 - 27,200,871 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2227,019,480 - 27,041,542 (+)NCBI
ROS_Cfam_1.02227,495,564 - 27,517,646 (+)NCBI
UMICH_Zoey_3.12227,157,251 - 27,179,316 (+)NCBI
UNSW_CanFamBas_1.02227,200,989 - 27,218,613 (+)NCBI
UU_Cfam_GSD_1.02227,268,194 - 27,290,288 (+)NCBI
Klf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945132,390,448 - 132,412,071 (-)NCBI
SpeTri2.0NW_0049365117,806,714 - 7,824,833 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KLF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,369,797 - 45,388,314 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,370,009 - 45,386,673 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21149,866,834 - 49,870,127 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap11q13-q14NCBI
KLF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1352,188,139 - 52,210,882 (+)NCBI
Vero_WHO_p1.0NW_0236660468,300,637 - 8,319,192 (+)NCBI
Klf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475127,488,434 - 27,509,871 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003579   ⟹   ENSCLAP00000003505
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540433,644,077 - 33,658,094 (-)Ensembl
RefSeq Acc Id: XM_005374184   ⟹   XP_005374241
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540433,642,604 - 33,665,445 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374241 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374241   ⟸   XM_005374184
- Sequence:
RefSeq Acc Id: ENSCLAP00000003505   ⟸   ENSCLAT00000003579


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002505 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003505 ENTREZGENE
Ensembl Transcript ENSCLAT00000003579 ENTREZGENE
NCBI Gene Klf5 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Klf5  Kruppel like factor 5    Kruppel-like factor 5 (intestinal)  Symbol and/or name change 5135510 APPROVED