Tmem254 (transmembrane protein 254) - Rat Genome Database

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Gene: Tmem254 (transmembrane protein 254) Chinchilla lanigera
Analyze
Symbol: Tmem254
Name: transmembrane protein 254
RGD ID: 9041874
Description: ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543713,061,162 - 13,067,024 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543713,061,162 - 13,067,024 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Tmem254
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543713,061,162 - 13,067,024 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543713,061,162 - 13,067,024 (+)NCBIChiLan1.0ChiLan1.0
TMEM254
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381080,078,665 - 80,092,551 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1080,078,646 - 80,092,557 (+)EnsemblGRCh38hg38GRCh38
GRCh371081,838,421 - 81,852,307 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361081,828,406 - 81,842,286 (+)NCBINCBI36Build 36hg18NCBI36
Build 341081,828,405 - 81,842,287NCBI
Celera1075,829,384 - 75,843,265 (+)NCBICelera
Cytogenetic Map10q22.3NCBI
HuRef1075,681,811 - 75,695,863 (+)NCBIHuRef
CHM1_11082,121,425 - 82,135,331 (+)NCBICHM1_1
T2T-CHM13v2.01080,947,824 - 80,961,714 (+)NCBIT2T-CHM13v2.0
Tmem254
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,923,722 - 25,928,096 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1425,923,724 - 25,928,096 (-)EnsemblGRCm39 Ensembl
GRCm381425,923,298 - 25,927,672 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,923,300 - 25,927,672 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,063,919 - 26,067,355 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl1426,203,369 - 26,207,041 (-)EnsemblGRCm38mm10GRCm38
MGSCv371426,742,784 - 26,747,158 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361424,757,354 - 24,760,394 (-)NCBIMGSCv36mm8
MGSCv361421,014,716 - 21,017,756 (-)NCBIMGSCv36mm8
Cytogenetic Map14A3NCBI
cM Map1415.49NCBI
Tmem254
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,510,705 - 1,514,591 (-)NCBIGRCr8
mRatBN7.2161,503,931 - 1,507,819 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,503,933 - 1,507,895 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx161,510,261 - 1,514,148 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0162,656,098 - 2,659,985 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,516,858 - 1,520,746 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,817,402 - 3,821,270 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,817,402 - 3,821,270 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,783,384 - 3,787,313 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,542,246 - 1,546,190 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1161,542,246 - 1,546,190 (-)NCBI
Celera161,479,734 - 1,483,581 (-)NCBICelera
Cytogenetic Map16p16NCBI
TMEM254
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2891,807,963 - 91,822,512 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11091,813,288 - 91,827,536 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01076,179,649 - 76,193,828 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11078,837,374 - 78,851,309 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,837,380 - 78,851,301 (-)Ensemblpanpan1.1panPan2
TMEM254
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1429,315,393 - 29,323,721 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl429,317,162 - 29,324,194 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha429,439,876 - 29,448,174 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0429,617,448 - 29,625,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,619,219 - 29,625,800 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1429,487,034 - 29,495,315 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,689,741 - 29,698,103 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0430,043,663 - 30,052,080 (-)NCBIUU_Cfam_GSD_1.0
Tmem254
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,686,620 - 51,696,402 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936521179,357 - 189,824 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936521178,856 - 189,132 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM254
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1481,931,301 - 81,940,401 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11481,931,294 - 81,940,443 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,542,475 - 88,551,615 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM254
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,710,027 - 51,724,078 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl951,708,127 - 51,724,156 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604812,054,600 - 12,068,904 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem254
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475412,544,580 - 12,550,168 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475412,543,266 - 12,549,910 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018388   ⟹   ENSCLAP00000018209
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543713,061,162 - 13,067,024 (+)Ensembl
RefSeq Acc Id: XM_005389882   ⟹   XP_005389939
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543713,061,407 - 13,067,024 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005389883   ⟹   XP_005389940
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543713,061,162 - 13,067,024 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013517113   ⟹   XP_013372567
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543713,061,431 - 13,063,666 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389939 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389940 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372567 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018209
  ENSCLAP00000018209.1
RefSeq Acc Id: XP_005389940   ⟸   XM_005389883
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YRM4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005389939   ⟸   XM_005389882
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013372567   ⟸   XM_013517113
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000018209   ⟸   ENSCLAT00000018388


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012491 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018388 ENTREZGENE
  ENSCLAT00000018388.1 UniProtKB/TrEMBL
InterPro TMEM254 UniProtKB/TrEMBL
NCBI Gene LOC102015241 ENTREZGENE
PANTHER PTHR34104 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 254 UniProtKB/TrEMBL
Pfam DUF4499 UniProtKB/TrEMBL
UniProt A0A8C2YRM4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Tmem254  transmembrane protein 254  LOC102015241  transmembrane protein 254-like  Symbol and/or name change 5135510 APPROVED