Tdp1 (tyrosyl-DNA phosphodiesterase 1) - Rat Genome Database
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Gene: Tdp1 (tyrosyl-DNA phosphodiesterase 1) Chinchilla lanigera
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Symbol: Tdp1
Name: tyrosyl-DNA phosphodiesterase 1
RGD ID: 9039618
Description: ENCODES a protein that exhibits 3'-tyrosyl-DNA phosphodiesterase activity (ortholog); double-stranded DNA binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN DNA repair (ortholog); double-strand break repair (ortholog); single strand break repair (ortholog); ASSOCIATED WITH autosomal recessive cerebellar ataxia (ortholog); spinocerebellar ataxia type 1 with axonal neuropathy (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,421,005 - 12,511,493 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,421,790 - 12,510,243 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Tdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543812,421,005 - 12,511,493 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543812,421,790 - 12,510,243 (+)NCBIChiLan1.0ChiLan1.0
TDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1489,954,939 - 90,044,764 (+)EnsemblGRCh38hg38GRCh38
GRCh381489,954,923 - 90,044,768 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371490,422,271 - 90,511,108 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371490,421,944 - 90,511,108 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361489,491,999 - 89,580,861 (+)NCBINCBI36hg18NCBI36
Build 341489,491,998 - 89,580,859NCBI
Celera1470,469,447 - 70,558,298 (+)NCBI
Cytogenetic Map14q32.11NCBI
HuRef1470,596,174 - 70,685,067 (+)NCBIHuRef
CHM1_11490,360,149 - 90,448,932 (+)NCBICHM1_1
Tdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391299,850,767 - 99,921,482 (+)NCBIGRCm39mm39
GRCm381299,884,515 - 99,955,223 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1299,884,517 - 99,955,219 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712101,122,725 - 101,193,429 (+)NCBIGRCm37mm9NCBIm37
MGSCv3612100,285,568 - 100,338,412 (+)NCBImm8
Celera12101,107,017 - 101,181,494 (+)NCBICelera
Cytogenetic Map12ENCBI
Tdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26119,163,192 - 119,231,029 (+)NCBI
Rnor_6.0 Ensembl6123,897,956 - 123,963,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06123,895,860 - 123,963,688 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06133,109,211 - 133,187,083 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46124,095,259 - 124,162,815 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16124,105,017 - 124,166,344 (+)NCBI
Celera6116,696,845 - 116,764,588 (+)NCBICelera
Cytogenetic Map6q32NCBI
TDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11489,926,462 - 90,014,802 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1489,926,462 - 90,014,802 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01470,574,066 - 70,662,562 (+)NCBIMhudiblu_PPA_v0panPan3
TDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl861,024,084 - 61,107,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1861,023,564 - 61,107,599 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Tdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493648817,237,002 - 17,311,325 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7111,767,089 - 111,853,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17111,767,094 - 111,853,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27118,331,680 - 118,417,900 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TDP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12467,672,178 - 67,762,340 (+)NCBI
Tdp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473412,319,499 - 12,414,815 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018671   ⟹   ENSCLAP00000018490
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543812,421,005 - 12,511,493 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018672   ⟹   ENSCLAP00000018491
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543812,421,005 - 12,511,493 (+)Ensembl
RefSeq Acc Id: XM_005390276   ⟹   XP_005390333
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543812,421,790 - 12,510,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005390277   ⟹   XP_005390334
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543812,421,952 - 12,510,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005390278   ⟹   XP_005390335
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543812,421,915 - 12,510,243 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005390279   ⟹   XP_005390336
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543812,421,815 - 12,510,243 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390333 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390334 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390335 (Get FASTA)   NCBI Sequence Viewer  
  XP_005390336 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005390333   ⟸   XM_005390276
- Sequence:
RefSeq Acc Id: XP_005390336   ⟸   XM_005390279
- Sequence:
RefSeq Acc Id: XP_005390335   ⟸   XM_005390278
- Sequence:
RefSeq Acc Id: XP_005390334   ⟸   XM_005390277
- Sequence:
RefSeq Acc Id: ENSCLAP00000018491   ⟸   ENSCLAT00000018672
RefSeq Acc Id: ENSCLAP00000018490   ⟸   ENSCLAT00000018671


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012684 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018490 ENTREZGENE
  ENSCLAP00000018491 ENTREZGENE
Ensembl Transcript ENSCLAT00000018671 ENTREZGENE
  ENSCLAT00000018672 ENTREZGENE
NCBI Gene Tdp1 ENTREZGENE