Scgb1a1 (secretoglobin family 1A member 1) - Rat Genome Database
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Gene: Scgb1a1 (secretoglobin family 1A member 1) Chinchilla lanigera
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Symbol: Scgb1a1
Name: secretoglobin family 1A member 1
RGD ID: 9037096
Description: ENCODES a protein that exhibits polychlorinated biphenyl binding (ortholog); INVOLVED IN negative regulation of interferon-gamma production (ortholog); negative regulation of interleukin-13 production (ortholog); negative regulation of interleukin-4 production (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); allergic rhinitis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: secretoglobin, family 1A, member 1 (uteroglobin); uteroglobin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955599688,414 - 690,644 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Scgb1a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955599688,414 - 690,644 (-)NCBIChiLan1.0ChiLan1.0
SCGB1A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1162,405,103 - 62,423,195 (+)EnsemblGRCh38hg38GRCh38
GRCh381162,419,033 - 62,423,195 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371162,186,507 - 62,190,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361161,943,099 - 61,947,243 (+)NCBINCBI36hg18NCBI36
Build 341161,943,098 - 61,947,242NCBI
Celera1159,515,913 - 59,520,084 (+)NCBI
Cytogenetic Map11q12.3NCBI
HuRef1158,514,572 - 58,518,782 (+)NCBIHuRef
CHM1_11162,069,549 - 62,073,720 (+)NCBICHM1_1
Scgb1a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39199,061,006 - 9,065,320 (-)NCBIGRCm39mm39
GRCm38199,083,642 - 9,087,956 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl199,083,636 - 9,087,958 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,158,132 - 9,162,446 (-)NCBIGRCm37mm9NCBIm37
MGSCv36199,150,685 - 9,154,970 (-)NCBImm8
Celera198,844,116 - 8,848,457 (-)NCBICelera
Cytogenetic Map19ANCBI
Scgb1a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01225,279,698 - 225,283,246 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,279,676 - 225,283,326 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,216,740 - 232,220,289 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,758,103 - 211,761,651 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11211,916,532 - 211,920,081 (-)NCBI
Celera1203,487,454 - 203,490,852 (-)NCBICelera
Cytogenetic Map1q43NCBI
SCGB1A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11161,133,649 - 61,137,873 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,133,649 - 61,137,873 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01157,774,560 - 57,780,334 (+)NCBIMhudiblu_PPA_v0panPan3
SCGB1A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1854,187,487 - 54,191,482 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11854,187,487 - 54,191,493 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Scgb1a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936581798,738 - 801,614 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCGB1A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,297,283 - 9,302,165 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,297,282 - 9,302,204 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,570,790 - 8,575,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCGB1A1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,470,091 - 11,474,915 (-)NCBI
ChlSab1.1 Ensembl111,470,195 - 11,474,149 (-)Ensembl
Scgb1a1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249261,029,120 - 1,030,250 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005414799   ⟹   XP_005414856
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599688,414 - 690,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005414800   ⟹   XP_005414857
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599688,414 - 689,762 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510070   ⟹   XP_013365524
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599688,414 - 689,285 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005414856 (Get FASTA)   NCBI Sequence Viewer  
  XP_005414857 (Get FASTA)   NCBI Sequence Viewer  
  XP_013365524 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005414856   ⟸   XM_005414799
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005414857   ⟸   XM_005414800
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013365524   ⟸   XM_013510070
- Peptide Label: isoform X1
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Scgb1a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Scgb1a1  secretoglobin family 1A member 1    secretoglobin, family 1A, member 1 (uteroglobin)  Symbol and/or name change 5135510 APPROVED