Sh3d19 (SH3 domain containing 19) - Rat Genome Database

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Gene: Sh3d19 (SH3 domain containing 19) Chinchilla lanigera
Analyze
Symbol: Sh3d19
Name: SH3 domain containing 19
RGD ID: 9035663
Description: ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); positive regulation of membrane protein ectodomain proteolysis (ortholog); regulation of cell morphogenesis (ortholog); ASSOCIATED WITH essential tremor (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3 domain-containing protein 19
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554715,726,267 - 5,770,384 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554715,724,303 - 5,810,868 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Sh3d19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554715,726,267 - 5,770,384 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554715,724,303 - 5,810,868 (-)NCBIChiLan1.0ChiLan1.0
SH3D19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384151,120,281 - 151,325,605 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4151,102,751 - 151,325,605 (-)EnsemblGRCh38hg38GRCh38
GRCh374152,041,433 - 152,246,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364152,260,886 - 152,367,022 (-)NCBINCBI36Build 36hg18NCBI36
Celera4149,365,961 - 149,472,384 (-)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4147,766,677 - 147,873,964 (-)NCBIHuRef
CHM1_14152,018,452 - 152,126,807 (-)NCBICHM1_1
T2T-CHM13v2.04154,444,161 - 154,649,516 (-)NCBIT2T-CHM13v2.0
Sh3d19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39385,878,112 - 86,037,833 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl385,878,416 - 86,037,833 (+)EnsemblGRCm39 Ensembl
GRCm38385,970,805 - 86,130,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl385,971,109 - 86,130,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv37385,888,356 - 85,934,444 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36386,145,668 - 86,216,449 (+)NCBIMGSCv36mm8
Celera386,110,367 - 86,155,905 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.83NCBI
Sh3d19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82173,654,234 - 173,814,030 (+)NCBIGRCr8
mRatBN7.22171,356,244 - 171,516,042 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2171,356,251 - 171,515,561 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.02185,268,028 - 185,431,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2185,268,259 - 185,431,354 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02204,659,111 - 204,822,609 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42178,045,383 - 178,083,708 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12177,920,690 - 178,031,610 (+)NCBI
Celera2165,329,132 - 165,488,785 (+)NCBICelera
Cytogenetic Map2q34NCBI
SH3D19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23149,004,958 - 149,237,421 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14149,362,444 - 149,594,519 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04143,460,618 - 143,664,796 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14155,115,280 - 155,344,548 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4155,115,280 - 155,217,392 (-)Ensemblpanpan1.1panPan2
SH3D19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11549,076,194 - 49,244,691 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1549,081,803 - 49,168,312 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1549,414,196 - 49,596,105 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01549,752,151 - 49,935,312 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1549,758,852 - 49,936,279 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11549,020,886 - 49,197,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01549,114,476 - 49,298,319 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01549,439,390 - 49,616,255 (-)NCBIUU_Cfam_GSD_1.0
Sh3d19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530141,290,041 - 41,381,939 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366891,147,353 - 1,239,064 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366891,147,350 - 1,241,202 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3D19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl877,689,716 - 77,876,664 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1877,689,393 - 77,876,412 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2882,393,740 - 82,581,045 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SH3D19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1797,698,007 - 97,893,193 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl797,697,382 - 97,847,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603777,308,365 - 77,503,285 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3d19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248582,560,049 - 2,750,467 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248582,558,035 - 2,750,502 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011937   ⟹   ENSCLAP00000011799
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554715,726,267 - 5,770,384 (-)Ensembl
RefSeq Acc Id: XM_013522884   ⟹   XP_013378338
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554715,724,303 - 5,810,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522885   ⟹   XP_013378339
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554715,724,303 - 5,810,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522886   ⟹   XP_013378340
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554715,724,303 - 5,810,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522887   ⟹   XP_013378341
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554715,724,303 - 5,810,868 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013378338 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378339 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378340 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378341 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011799.1
Reference Protein Sequences
RefSeq Acc Id: XP_013378341   ⟸   XM_013522887
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013378340   ⟸   XM_013522886
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013378339   ⟸   XM_013522885
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013378338   ⟸   XM_013522884
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000011799   ⟸   ENSCLAT00000011937
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008133 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011937.1 UniProtKB/TrEMBL
Gene3D-CATH SH3 Domains UniProtKB/TrEMBL
InterPro Eve1_SH3_1 UniProtKB/TrEMBL
  Eve1_SH3_3 UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Sh3d19 ENTREZGENE
PANTHER SH3 DOMAIN-CONTAINING UniProtKB/TrEMBL
  SH3 DOMAIN-CONTAINING PROTEIN 19 UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS P67PHOX UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt A0A8C2VF45_CHILA UniProtKB/TrEMBL