LOC102020573 (chromosome unknown open reading frame, human C3orf22) - Rat Genome Database

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Gene: LOC102020573 (chromosome unknown open reading frame, human C3orf22) Chinchilla lanigera
Analyze
Symbol: LOC102020573
Name: chromosome unknown open reading frame, human C3orf22
RGD ID: 9034067
Description: ASSOCIATED WITH alkaptonuria (ortholog); genetic disease (ortholog); Primary Lymphedema with Myelodysplasia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein C3orf22 homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542121,945,527 - 21,949,229 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
LOC102020573
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542121,945,527 - 21,949,229 (+)NCBIChiLan1.0ChiLan1.0
C3orf22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383126,526,999 - 126,558,932 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3126,526,999 - 126,558,965 (-)EnsemblGRCh38hg38GRCh38
GRCh373126,245,842 - 126,277,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363127,751,209 - 127,760,448 (-)NCBINCBI36Build 36hg18NCBI36
Celera3124,693,189 - 124,702,399 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3123,648,905 - 123,658,113 (-)NCBIHuRef
CHM1_13126,231,527 - 126,240,737 (-)NCBICHM1_1
T2T-CHM13v2.03129,259,307 - 129,291,738 (-)NCBIT2T-CHM13v2.0
BC048671
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39690,278,201 - 90,282,430 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl690,278,201 - 90,282,431 (+)EnsemblGRCm39 Ensembl
GRCm38690,301,219 - 90,305,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl690,301,219 - 90,305,449 (+)EnsemblGRCm38mm10GRCm38
MGSCv37690,251,264 - 90,255,442 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36690,266,774 - 90,270,952 (+)NCBIMGSCv36mm8
Celera692,195,104 - 92,199,276 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map640.12NCBI
C4h3orf22
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84124,374,885 - 124,379,380 (+)NCBIGRCr8
mRatBN7.24122,817,681 - 122,822,175 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4122,817,681 - 122,822,175 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4128,284,375 - 128,288,858 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04124,059,148 - 124,063,631 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04122,683,362 - 122,687,845 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04122,217,505 - 122,221,999 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4122,217,505 - 122,221,999 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04186,758,874 - 186,763,369 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44124,564,593 - 124,569,087 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4111,742,535 - 111,746,963 (+)NCBICelera
Cytogenetic Map4q34NCBI
C2H3orf22
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,479,862 - 124,489,154 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13124,484,642 - 124,498,688 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03123,599,191 - 123,609,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13130,914,841 - 130,924,133 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3130,914,841 - 130,924,133 (-)Ensemblpanpan1.1panPan2
C20H3orf22
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.120752,614 - 758,180 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl20753,461 - 757,115 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha20786,766 - 792,311 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.020764,139 - 769,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl20764,133 - 768,646 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.120492,041 - 497,588 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.020821,005 - 826,558 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.020779,899 - 785,446 (-)NCBIUU_Cfam_GSD_1.0
CUNH3orf22
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494219,080,330 - 19,082,462 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936898608,726 - 610,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH3orf22
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12254,455,637 - 54,465,446 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2254,461,735 - 54,465,250 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041111,826,162 - 111,835,348 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013513638   ⟹   XP_013369092
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542121,945,527 - 21,949,229 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013369092 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013369092   ⟸   XM_013513638
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000028733 ENTREZGENE
Ensembl Transcript ENSCLAT00000038669 ENTREZGENE
NCBI Gene LOC102020573 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102020573  chromosome unknown open reading frame, human C3orf22    uncharacterized LOC102020573  Symbol and/or name change 5135510 APPROVED