Ninj1 (ninjurin 1) - Rat Genome Database

Name: Ninj1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Ninj1 (ninjurin 1) Chinchilla lanigera

Analyze

Symbol:

Ninj1

Name:

ninjurin 1

RGD ID:

9029621

Description:

ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); cell-cell adhesion mediator activity (ortholog); lipopolysaccharide binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular hyperosmotic response (ortholog); chemotaxis (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); COVID-19 (ortholog); FOUND IN extracellular region (ortholog); filopodium membrane (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ninjurin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NINJ1 (ninjurin 1)	NCBI	Ortholog
Mus musculus (house mouse):	Ninj1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ninj1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NINJ1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NINJ1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ninj1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NINJ1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NINJ1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ninj1 (ninjurin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955515	4,892,039 - 4,907,323 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955515	4,892,748 - 4,905,627 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

allergic contact dermatitis (ISO)

COVID-19 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Cellular Component

extracellular region (ISO)

filopodium membrane (ISO)

plasma membrane (ISO)

synaptic membrane (ISO)

Molecular Function

cell adhesion mediator activity (ISO)

cell-cell adhesion mediator activity (ISO)

lipopolysaccharide binding (ISO)

membrane destabilizing activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Ninj1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955515	4,892,039 - 4,907,323 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955515	4,892,748 - 4,905,627 (+)	NCBI	ChiLan1.0	ChiLan1.0

NINJ1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	93,121,496 - 93,134,251 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	93,121,496 - 93,134,251 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	95,883,778 - 95,896,533 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	94,923,592 - 94,936,391 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	92,963,334 - 92,976,125	NCBI
Celera	9	66,325,478 - 66,338,278 (-)	NCBI		Celera
Cytogenetic Map	9	q22.31	NCBI
HuRef	9	65,560,157 - 65,572,990 (-)	NCBI		HuRef
CHM1_1	9	96,030,378 - 96,043,177 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	105,288,107 - 105,300,864 (-)	NCBI		T2T-CHM13v2.0

Ninj1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	49,341,005 - 49,349,727 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	49,340,961 - 49,349,720 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	49,187,529 - 49,196,251 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	49,187,485 - 49,196,244 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	49,282,916 - 49,291,620 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	49,199,484 - 49,208,188 (+)	NCBI		MGSCv36	mm8
Celera	13	50,277,705 - 50,286,409 (+)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	25.14	NCBI

Ninj1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	15,659,208 - 15,668,115 (-)	NCBI		GRCr8
mRatBN7.2	17	15,452,804 - 15,461,684 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	15,452,813 - 15,461,704 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	15,339,900 - 15,348,710 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	16,944,942 - 16,953,752 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	15,266,672 - 15,275,482 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	15,866,235 - 15,881,284 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	15,866,237 - 15,881,327 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	17,930,052 - 17,945,126 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	21,410,701 - 21,419,472 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	21,410,700 - 21,419,472 (-)	NCBI
Celera	17	15,182,635 - 15,191,450 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

NINJ1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	46,293,062 - 46,306,329 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	46,295,457 - 46,308,713 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	64,245,086 - 64,258,614 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	92,311,502 - 92,324,025 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	92,311,502 - 92,324,030 (-)	Ensembl	panpan1.1		panPan2

NINJ1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	98,566,520 - 98,576,668 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	98,567,680 - 98,576,657 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	98,960,941 - 98,970,738 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	99,183,728 - 99,193,686 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	98,797,064 - 98,806,858 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	98,532,406 - 98,542,206 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	99,288,008 - 99,297,814 (+)	NCBI		UU_Cfam_GSD_1.0

Ninj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	8,270,364 - 8,275,943 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	2,487,904 - 2,491,827 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	2,486,831 - 2,531,943 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NINJ1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	42,654,228 - 42,672,778 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	42,654,536 - 42,672,830 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

NINJ1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	103,509,950 - 103,523,158 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	103,510,454 - 103,523,084 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	91,784,589 - 91,798,519 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ninj1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	3,430,209 - 3,445,542 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	3,430,539 - 3,442,205 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005408897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013506880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013506881	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01067332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01002202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000002398 ⟹ ENSCLAP00000002347

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955515	4,892,039 - 4,907,323 (+)	Ensembl

RefSeq Acc Id:

XM_005408897 ⟹ XP_005408954

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955515	4,892,758 - 4,905,627 (+)	NCBI

Sequence:

show sequence

GGGCAGGGAGGGAGGAGCGGGCGCAGGGCCCGGGCCGCGGGAGGGACGCTGCGCGCTCAGGCAG
GAGTGAGTTTGTCCTGCGGCTGCACCATGGACTCGCGCACCGAGGAGTACGAGCTCAACGGCGA
CCTGCACCCGGGCTCGCCCGGCTCCCCGGACTCCGCGCCGCCCTCCCGCTGGGGCCGGAGGAAC
CAGCCCATCAATGTGAACCATTACGCCAACAAGAAGAGCGCCGCTGAGAGCATGCTGGACATCG
CGCTGCTCATGGCCAACGCGTCGCAGCTGAAGGCTGTGGTGGAGCAGGGCCCTGCCTTCGCCTT
CTTCGTGCCCCTGGTGGTCCTCATCTCCATCTCCCTGGTGCTGCAGATTGGCGTGGGGGTGCTG
CTCATCTTCCTCGTTAAGTACGACCTTAACAACCCGGCCAAGCACGCCAAGCTGGACTTCCTGA
ACAACCTGGCCACGGGACTGGTGTTCATCATCGTGGTGGTCAACATCTTCATCACTGCTTTCGG
GGTCCAGAAGCCTGTCCTTGGCGTGGCGCCCCAGCAGTAGAGTGTCCAGATCCTGAGTGGCACC
TGCCCCACAGCCAGTCACCCGGAGCCCAGGACTGCATTCCCTTGAGGTATCCACCTCCCTGTGT
GTAGCACGCTGAACCTGCCAGGCCAGCACCTGGAACAAGCCTCTGCTCCCACTGTGACTGTCAT
GTGGGGGCTGGACACAAGGCCCAGAAGGCCAGAACTGGACAGTCCCAGACACCTGCCACCCGGG
GACATGTAGCAGGTCCATGGACAGGCCGGACGAGGAGCCAACCGGCCTCTGTCTCAGGACATTC
CAGAAGGACAAGGAGTTGCTCCTCCCCTTGCCAATATACCAGCATCCCTGCTTCCTATGGGGCC
TGCCAGGTCCCCTGGTGACCACTGCCTCTGCTGTCTCCTAACCCAGAGACACCCAGTGGTGGCC
TGGGGCTGCAGCCTCAGTGCCTGGGCTGTGTAACCGTCGGGAGGCAGCTGTGCCCACTTGGGCC
CAGGACTGTGCTCATACCTTCTACCAGCAGCAGCCTGGCAGAGCCCCAGCCCCTCCCTAGGTGC
CCAAGTGCCCACTTAACAAGAATGACCAACAAAGCCCATGCTCCTTGTCGGGCTCCGGGCACCA
TCCTCCCTGTCCTGGGGCGGGACCCTGTCAGTGCCCCTTCCTGTAAGCCTCAGAGCGCACAGCT
CATCCAGTGCCTTCCCCACAAAGTTGGGGTTGGGGACCTCTTTGGCTCCCAGCCTGTCTCAGGA
TGCGGTTTGGAGGCAGAGGGGCCTGGGTCGGAGGCTCAGATGCCTTGCTGCTTTTCTCTCTTTT
TTAAAAAAAATTTTTATTTTGAGACAGGGTCTCGCTAAGCTGCTCAGGCTAGCCTTGAACTCCT
TATTCTCCTGCATCCGCTTCCTGAGTAGCTGGGATTGTAGGCATGTGATACTGCACCCAGCAGC
TTTTATTCTTTATACCAACACATAGAAAAGTTGTAAGAAAAGTTGAAGAATGCCCTCACAGACT
TGTGAACATTTTGCCAAGTGTGATCTCTGCTGTCCCAGGACCTGCGCAGCCAGCCTGTCCAGTG
TGTGTGAGGAACGCAGAACCCCAGGCCCCTGGCCTCAGGGTGAGGACCTGGGTGGGTTGGCCCC
CGGGCGCTGCAAGACCCCCAAGCACTCCTGTGTCAGTGCTAGAAACAGGGCCTTTGCAGTCCTC
CTGGAGCCAGCACAGCAGCCCCATGTTCAGGGCCCTGATGTGTCCCTTGTAGCAAAACAAGATA
AAGACCTCCCTAGGACCCCACACATGTCACACTGCTTTTTGTCCAAGTTCAGGGCAGGCTCTCT
CACCCTGGCAGGCCCTGTAATGTCCCCCAGCCTTGCCCAAGCCTTGTTTCTGGGGCAACAGTCC
TGGGGCTGCCCTGTCCAGGGACCTGCTCAGGTGTACGCTGCCAGCACAGTGCCCCTGGTGTGGG
CTGGCTCACAACAGCCAGATGTTGGCCACCACATGGCTTGGTTCCTCCTCTAAGGAGGAAATTC
ACCCAGATGGGGCTGCGGGAGGGAGGATTCCAAGAGGGGTGCACTGAGGCCAGGCCACAGCCCT
ATCCCCAGAGGCACTTCCTGGCCCCCACAGCTCTGTCCCTTGGTGGCCTCCCTCAGGCACCCAT
GTTTGCTGCACTATATCATATAGTCATGTCTCACTAGCATGGCCCCACGGCCCTACCCCTCTCT
CTGGAGTGATTGCTCCCAGGCATCCCAAGGCCATTGTACCGCTGTCCGAGGCTACCCCTTCCTG
TCACTTGGCTAGTCCCTACCTGGGTTGTTACCTTTGATACTTGGGGCGAGAGTCACCATCCATG
TTAGCAGAGGTTGGTGTGTTTGGCCAGAGCGTGGTCTGAGCCCAGCCCAAGGGGAATGTTGGCA
CCAGAGAACAAGAGTCCTATCCAGCGGGCCTCCTGGTGCTGGACTTATGTTTGGTCCTTGGTCT
GGCCTGGCTCTCCCATCAGTCCCACCTCCTGCAGCCTGTGTCCCACCTCTCTCGGGCATACAGT
CAGTGCTCAGGAAACTTCTGGGGTAGAATTCATCCCTCCAAGTGTGCTGGGCCCTGTGCCTCTG
TCGTAGCAGGCAAGGGGCAGATAGAAAACAGTCCAGCTCACTCCCAGGTGCTCCTCTGTGAGGC
CTGCCCTGCCCTGAAAACCGAGATCTGCTCTCAGGAACAGCACTGGTGGGGAGACCTTGAGAGT
GAGCAAGATGTGCAAGGAGCAAGGAGATGGGCCCCCCAAGTTGTGCGGAGCCACAGAGGGACAT
GTAGGGAGGTCAGCAGGCAGTGCTGGAGGGGGGCGCGTGTTACAGGCAGGGGGTTAGCCTGAGC
TCTGAGGTTGGTGCAAGCCCTGAGGTTGGCATTGCAAGAATGGTGGGGTGGGGAGAGTGGGGAC
AGTCACACAGAACTGGGAATGGCCATGAAGGGCTGAGTGAGATGGAGGTTTGTTTCTTTCATCT
TCTTCCTATAATGGATTAAAGAGGTGATTAGCTAGATGGATAGGCAGGTAGGTGGAAGGGTGTG
TAGGTGAATGGGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGA
TAGATGATAGATGGATGATAGGCAGGCAGGCATAGACATGATAGATAAGGATAGATTAGGCCAT
GGCTTGGCTAAGTGTCTCCCAAAAATCCCCAGGGTGGCACCATTGGTAAGTGGTGGAACCTTTA
AGAGGTGGGGCCTAGTGGGAGGTCTGTAGATTATTGGGGGCATGGCCTTAAAGGAGACTGGGAC
TGCA

hide sequence

RefSeq Acc Id:

XM_013506880 ⟹ XP_013362334

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955515	4,892,930 - 4,905,627 (+)	NCBI

Sequence:

show sequence

TCTCCCCTCCGCGCTGAGCCCCGTGCCCCGCGCCGCCCTCTCTGGGCCGAAAGCCCGCAGCGCG
GCGGGCACCTGTGGGCGTCGGGCCAAGCGCTCGCCGTGTCCACACTGCGGGGAGCGGGGGAGAA
GCTGTGCCCCGGCCAAGTCCTGCTGGCCCCGAGCGGTGGCCGCCGTGGCTCCGGGCACCCCGGC
AGGAGAGCGGGGGCGCGGCGCGGGTGGGTGTGCTGGTTCCGGGCAATGCCCACGCGTAGCTGCG
CCTCATCTCCGAGCCTTCACACCGCCTTCCTAACTTCAGCCCCGCCAGGCCATCTCCTGGTGCG
CCGCGGGGTGGGCGTGGAGTTACCGCCTCTGGGACCCAGGCCAGCGGCCGGCGGACGGTTACGT
CACCGCGAGGTGACCACACTGCCCATGCTGTCGTGTTGGGGAAACCCGGGCACGTGTTGTGGCT
CCATTCACCTGACTTCCAGAAAAAGACGTCACCACTCACTGCCCCCGGGATGCCCACCCACAGG
CCTTGGGGTGAAGGGGGACTGTCCAGAGCCTGCCCCCCACATTGGAGGCCCATGGCAGTGTCAC
TTGGTATGCATCACCACCTTCATGGGTCCAGCTGATGGCCAAAGTCCTCCTGTTCAAGCCCTGG
GGACCCGCAGCACCCTTGCCCTATGGCCAAACCCATCTCCGCCCTCCCGCTGGGGCCGGAGGAA
CCAGCCCATCAATGTGAACCATTACGCCAACAAGAAGAGCGCCGCTGAGAGCATGCTGGACATC
GCGCTGCTCATGGCCAACGCGTCGCAGCTGAAGGCTGTGGTGGAGCAGGGCCCTGCCTTCGCCT
TCTTCGTGCCCCTGGTGGTCCTCATCTCCATCTCCCTGGTGCTGCAGATTGGCGTGGGGGTGCT
GCTCATCTTCCTCGTTAAGTACGACCTTAACAACCCGGCCAAGCACGCCAAGCTGGACTTCCTG
AACAACCTGGCCACGGGACTGGTGTTCATCATCGTGGTGGTCAACATCTTCATCACTGCTTTCG
GGGTCCAGAAGCCTGTCCTTGGCGTGGCGCCCCAGCAGTAGAGTGTCCAGATCCTGAGTGGCAC
CTGCCCCACAGCCAGTCACCCGGAGCCCAGGACTGCATTCCCTTGAGGTATCCACCTCCCTGTG
TGTAGCACGCTGAACCTGCCAGGCCAGCACCTGGAACAAGCCTCTGCTCCCACTGTGACTGTCA
TGTGGGGGCTGGACACAAGGCCCAGAAGGCCAGAACTGGACAGTCCCAGACACCTGCCACCCGG
GGACATGTAGCAGGTCCATGGACAGGCCGGACGAGGAGCCAACCGGCCTCTGTCTCAGGACATT
CCAGAAGGACAAGGAGTTGCTCCTCCCCTTGCCAATATACCAGCATCCCTGCTTCCTATGGGGC
CTGCCAGGTCCCCTGGTGACCACTGCCTCTGCTGTCTCCTAACCCAGAGACACCCAGTGGTGGC
CTGGGGCTGCAGCCTCAGTGCCTGGGCTGTGTAACCGTCGGGAGGCAGCTGTGCCCACTTGGGC
CCAGGACTGTGCTCATACCTTCTACCAGCAGCAGCCTGGCAGAGCCCCAGCCCCTCCCTAGGTG
CCCAAGTGCCCACTTAACAAGAATGACCAACAAAGCCCATGCTCCTTGTCGGGCTCCGGGCACC
ATCCTCCCTGTCCTGGGGCGGGACCCTGTCAGTGCCCCTTCCTGTAAGCCTCAGAGCGCACAGC
TCATCCAGTGCCTTCCCCACAAAGTTGGGGTTGGGGACCTCTTTGGCTCCCAGCCTGTCTCAGG
ATGCGGTTTGGAGGCAGAGGGGCCTGGGTCGGAGGCTCAGATGCCTTGCTGCTTTTCTCTCTTT
TTTAAAAAAAATTTTTATTTTGAGACAGGGTCTCGCTAAGCTGCTCAGGCTAGCCTTGAACTCC
TTATTCTCCTGCATCCGCTTCCTGAGTAGCTGGGATTGTAGGCATGTGATACTGCACCCAGCAG
CTTTTATTCTTTATACCAACACATAGAAAAGTTGTAAGAAAAGTTGAAGAATGCCCTCACAGAC
TTGTGAACATTTTGCCAAGTGTGATCTCTGCTGTCCCAGGACCTGCGCAGCCAGCCTGTCCAGT
GTGTGTGAGGAACGCAGAACCCCAGGCCCCTGGCCTCAGGGTGAGGACCTGGGTGGGTTGGCCC
CCGGGCGCTGCAAGACCCCCAAGCACTCCTGTGTCAGTGCTAGAAACAGGGCCTTTGCAGTCCT
CCTGGAGCCAGCACAGCAGCCCCATGTTCAGGGCCCTGATGTGTCCCTTGTAGCAAAACAAGAT
AAAGACCTCCCTAGGACCCCACACATGTCACACTGCTTTTTGTCCAAGTTCAGGGCAGGCTCTC
TCACCCTGGCAGGCCCTGTAATGTCCCCCAGCCTTGCCCAAGCCTTGTTTCTGGGGCAACAGTC
CTGGGGCTGCCCTGTCCAGGGACCTGCTCAGGTGTACGCTGCCAGCACAGTGCCCCTGGTGTGG
GCTGGCTCACAACAGCCAGATGTTGGCCACCACATGGCTTGGTTCCTCCTCTAAGGAGGAAATT
CACCCAGATGGGGCTGCGGGAGGGAGGATTCCAAGAGGGGTGCACTGAGGCCAGGCCACAGCCC
TATCCCCAGAGGCACTTCCTGGCCCCCACAGCTCTGTCCCTTGGTGGCCTCCCTCAGGCACCCA
TGTTTGCTGCACTATATCATATAGTCATGTCTCACTAGCATGGCCCCACGGCCCTACCCCTCTC
TCTGGAGTGATTGCTCCCAGGCATCCCAAGGCCATTGTACCGCTGTCCGAGGCTACCCCTTCCT
GTCACTTGGCTAGTCCCTACCTGGGTTGTTACCTTTGATACTTGGGGCGAGAGTCACCATCCAT
GTTAGCAGAGGTTGGTGTGTTTGGCCAGAGCGTGGTCTGAGCCCAGCCCAAGGGGAATGTTGGC
ACCAGAGAACAAGAGTCCTATCCAGCGGGCCTCCTGGTGCTGGACTTATGTTTGGTCCTTGGTC
TGGCCTGGCTCTCCCATCAGTCCCACCTCCTGCAGCCTGTGTCCCACCTCTCTCGGGCATACAG
TCAGTGCTCAGGAAACTTCTGGGGTAGAATTCATCCCTCCAAGTGTGCTGGGCCCTGTGCCTCT
GTCGTAGCAGGCAAGGGGCAGATAGAAAACAGTCCAGCTCACTCCCAGGTGCTCCTCTGTGAGG
CCTGCCCTGCCCTGAAAACCGAGATCTGCTCTCAGGAACAGCACTGGTGGGGAGACCTTGAGAG
TGAGCAAGATGTGCAAGGAGCAAGGAGATGGGCCCCCCAAGTTGTGCGGAGCCACAGAGGGACA
TGTAGGGAGGTCAGCAGGCAGTGCTGGAGGGGGGCGCGTGTTACAGGCAGGGGGTTAGCCTGAG
CTCTGAGGTTGGTGCAAGCCCTGAGGTTGGCATTGCAAGAATGGTGGGGTGGGGAGAGTGGGGA
CAGTCACACAGAACTGGGAATGGCCATGAAGGGCTGAGTGAGATGGAGGTTTGTTTCTTTCATC
TTCTTCCTATAATGGATTAAAGAGGTGATTAGCTAGATGGATAGGCAGGTAGGTGGAAGGGTGT
GTAGGTGAATGGGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAG
ATAGATGATAGATGGATGATAGGCAGGCAGGCATAGACATGATAGATAAGGATAGATTAGGCCA
TGGCTTGGCTAAGTGTCTCCCAAAAATCCCCAGGGTGGCACCATTGGTAAGTGGTGGAACCTTT
AAGAGGTGGGGCCTAGTGGGAGGTCTGTAGATTATTGGGGGCATGGCCTTAAAGGAGACTGGGA
CTGCA

hide sequence

RefSeq Acc Id:

XM_013506881 ⟹ XP_013362335

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955515	4,892,748 - 4,905,627 (+)	NCBI

Sequence:

show sequence

GCGTGGCATTGGGCAGGGAGGGAGGAGCGGGCGCAGGGCCCGGGCCGCGGGAGGGACGCTGCGC
GCTCAGGCAGGAGTGAGTTTGTCCTGCGGCTGCACCATGGACTCGCGCACCGAGGAGTACGAGC
TCAACGGCGACCTGCACCCGGGCTCGCCCGGCTCCCCGGACTCCGCGGCCCATGGCAGTGTCAC
TTGGTATGCATCACCACCTTCATGGGTCCAGCTGATGGCCAAAGTCCTCCTGTTCAAGCCCTGG
GGACCCGCAGCACCCTTGCCCTATGGCCAAACCCATCTCCGCCCTCCCGCTGGGGCCGGAGGAA
CCAGCCCATCAATGTGAACCATTACGCCAACAAGAAGAGCGCCGCTGAGAGCATGCTGGACATC
GCGCTGCTCATGGCCAACGCGTCGCAGCTGAAGGCTGTGGTGGAGCAGGGCCCTGCCTTCGCCT
TCTTCGTGCCCCTGGTGGTCCTCATCTCCATCTCCCTGGTGCTGCAGATTGGCGTGGGGGTGCT
GCTCATCTTCCTCGTTAAGTACGACCTTAACAACCCGGCCAAGCACGCCAAGCTGGACTTCCTG
AACAACCTGGCCACGGGACTGGTGTTCATCATCGTGGTGGTCAACATCTTCATCACTGCTTTCG
GGGTCCAGAAGCCTGTCCTTGGCGTGGCGCCCCAGCAGTAGAGTGTCCAGATCCTGAGTGGCAC
CTGCCCCACAGCCAGTCACCCGGAGCCCAGGACTGCATTCCCTTGAGGTATCCACCTCCCTGTG
TGTAGCACGCTGAACCTGCCAGGCCAGCACCTGGAACAAGCCTCTGCTCCCACTGTGACTGTCA
TGTGGGGGCTGGACACAAGGCCCAGAAGGCCAGAACTGGACAGTCCCAGACACCTGCCACCCGG
GGACATGTAGCAGGTCCATGGACAGGCCGGACGAGGAGCCAACCGGCCTCTGTCTCAGGACATT
CCAGAAGGACAAGGAGTTGCTCCTCCCCTTGCCAATATACCAGCATCCCTGCTTCCTATGGGGC
CTGCCAGGTCCCCTGGTGACCACTGCCTCTGCTGTCTCCTAACCCAGAGACACCCAGTGGTGGC
CTGGGGCTGCAGCCTCAGTGCCTGGGCTGTGTAACCGTCGGGAGGCAGCTGTGCCCACTTGGGC
CCAGGACTGTGCTCATACCTTCTACCAGCAGCAGCCTGGCAGAGCCCCAGCCCCTCCCTAGGTG
CCCAAGTGCCCACTTAACAAGAATGACCAACAAAGCCCATGCTCCTTGTCGGGCTCCGGGCACC
ATCCTCCCTGTCCTGGGGCGGGACCCTGTCAGTGCCCCTTCCTGTAAGCCTCAGAGCGCACAGC
TCATCCAGTGCCTTCCCCACAAAGTTGGGGTTGGGGACCTCTTTGGCTCCCAGCCTGTCTCAGG
ATGCGGTTTGGAGGCAGAGGGGCCTGGGTCGGAGGCTCAGATGCCTTGCTGCTTTTCTCTCTTT
TTTAAAAAAAATTTTTATTTTGAGACAGGGTCTCGCTAAGCTGCTCAGGCTAGCCTTGAACTCC
TTATTCTCCTGCATCCGCTTCCTGAGTAGCTGGGATTGTAGGCATGTGATACTGCACCCAGCAG
CTTTTATTCTTTATACCAACACATAGAAAAGTTGTAAGAAAAGTTGAAGAATGCCCTCACAGAC
TTGTGAACATTTTGCCAAGTGTGATCTCTGCTGTCCCAGGACCTGCGCAGCCAGCCTGTCCAGT
GTGTGTGAGGAACGCAGAACCCCAGGCCCCTGGCCTCAGGGTGAGGACCTGGGTGGGTTGGCCC
CCGGGCGCTGCAAGACCCCCAAGCACTCCTGTGTCAGTGCTAGAAACAGGGCCTTTGCAGTCCT
CCTGGAGCCAGCACAGCAGCCCCATGTTCAGGGCCCTGATGTGTCCCTTGTAGCAAAACAAGAT
AAAGACCTCCCTAGGACCCCACACATGTCACACTGCTTTTTGTCCAAGTTCAGGGCAGGCTCTC
TCACCCTGGCAGGCCCTGTAATGTCCCCCAGCCTTGCCCAAGCCTTGTTTCTGGGGCAACAGTC
CTGGGGCTGCCCTGTCCAGGGACCTGCTCAGGTGTACGCTGCCAGCACAGTGCCCCTGGTGTGG
GCTGGCTCACAACAGCCAGATGTTGGCCACCACATGGCTTGGTTCCTCCTCTAAGGAGGAAATT
CACCCAGATGGGGCTGCGGGAGGGAGGATTCCAAGAGGGGTGCACTGAGGCCAGGCCACAGCCC
TATCCCCAGAGGCACTTCCTGGCCCCCACAGCTCTGTCCCTTGGTGGCCTCCCTCAGGCACCCA
TGTTTGCTGCACTATATCATATAGTCATGTCTCACTAGCATGGCCCCACGGCCCTACCCCTCTC
TCTGGAGTGATTGCTCCCAGGCATCCCAAGGCCATTGTACCGCTGTCCGAGGCTACCCCTTCCT
GTCACTTGGCTAGTCCCTACCTGGGTTGTTACCTTTGATACTTGGGGCGAGAGTCACCATCCAT
GTTAGCAGAGGTTGGTGTGTTTGGCCAGAGCGTGGTCTGAGCCCAGCCCAAGGGGAATGTTGGC
ACCAGAGAACAAGAGTCCTATCCAGCGGGCCTCCTGGTGCTGGACTTATGTTTGGTCCTTGGTC
TGGCCTGGCTCTCCCATCAGTCCCACCTCCTGCAGCCTGTGTCCCACCTCTCTCGGGCATACAG
TCAGTGCTCAGGAAACTTCTGGGGTAGAATTCATCCCTCCAAGTGTGCTGGGCCCTGTGCCTCT
GTCGTAGCAGGCAAGGGGCAGATAGAAAACAGTCCAGCTCACTCCCAGGTGCTCCTCTGTGAGG
CCTGCCCTGCCCTGAAAACCGAGATCTGCTCTCAGGAACAGCACTGGTGGGGAGACCTTGAGAG
TGAGCAAGATGTGCAAGGAGCAAGGAGATGGGCCCCCCAAGTTGTGCGGAGCCACAGAGGGACA
TGTAGGGAGGTCAGCAGGCAGTGCTGGAGGGGGGCGCGTGTTACAGGCAGGGGGTTAGCCTGAG
CTCTGAGGTTGGTGCAAGCCCTGAGGTTGGCATTGCAAGAATGGTGGGGTGGGGAGAGTGGGGA
CAGTCACACAGAACTGGGAATGGCCATGAAGGGCTGAGTGAGATGGAGGTTTGTTTCTTTCATC
TTCTTCCTATAATGGATTAAAGAGGTGATTAGCTAGATGGATAGGCAGGTAGGTGGAAGGGTGT
GTAGGTGAATGGGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGATAG
ATAGATGATAGATGGATGATAGGCAGGCAGGCATAGACATGATAGATAAGGATAGATTAGGCCA
TGGCTTGGCTAAGTGTCTCCCAAAAATCCCCAGGGTGGCACCATTGGTAAGTGGTGGAACCTTT
AAGAGGTGGGGCCTAGTGGGAGGTCTGTAGATTATTGGGGGCATGGCCTTAAAGGAGACTGGGA
CTGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005408954	(Get FASTA)	NCBI Sequence Viewer
	XP_013362334	(Get FASTA)	NCBI Sequence Viewer
	XP_013362335	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000002347
	ENSCLAP00000002347.1

RefSeq Acc Id:	XP_005408954 ⟸ XM_005408897
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UKS1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSRTEEYELNGDLHPGSPGSPDSAPPSRWGRRNQPINVNHYANKKSAAESMLDIALLMANASQ LKAVVEQGPAFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVF IIVVVNIFITAFGVQKPVLGVAPQQ hide sequence

RefSeq Acc Id:	XP_013362335 ⟸ XM_013506881
- Peptide Label:	isoform X2
- Sequence:	show sequence MGPADGQSPPVQALGTRSTLALWPNPSPPSRWGRRNQPINVNHYANKKSAAESMLDIALLMANA SQLKAVVEQGPAFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGL VFIIVVVNIFITAFGVQKPVLGVAPQQ hide sequence

RefSeq Acc Id:

XP_013362334 ⟸ XM_013506880

- Peptide Label:

isoform X1

- Sequence:

show sequence

MPTRSCASSPSLHTAFLTSAPPGHLLVRRGVGVELPPLGPRPAAGGRLRHREVTTLPMLSCWGN
PGTCCGSIHLTSRKRRHHSLPPGCPPTGLGVKGDCPEPAPHIGGPWQCHLVCITTFMGPADGQS
PPVQALGTRSTLALWPNPSPPSRWGRRNQPINVNHYANKKSAAESMLDIALLMANASQLKAVVE
QGPAFAFFVPLVVLISISLVLQIGVGVLLIFLVKYDLNNPAKHAKLDFLNNLATGLVFIIVVVN
IFITAFGVQKPVLGVAPQQ

hide sequence

Ensembl Acc Id:

ENSCLAP00000002347 ⟸ ENSCLAT00000002398

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000001701	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000002398	ENTREZGENE
	ENSCLAT00000002398.1	UniProtKB/TrEMBL
InterPro	Ninjurin	UniProtKB/TrEMBL
NCBI Gene	Ninj1	ENTREZGENE
PANTHER	PTHR12316	UniProtKB/TrEMBL
	PTHR12316:SF19	UniProtKB/TrEMBL
Pfam	Ninjurin	UniProtKB/TrEMBL
UniProt	A0A8C2UKS1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD