Wfs1 (wolframin ER transmembrane glycoprotein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Wfs1 (wolframin ER transmembrane glycoprotein) Chinchilla lanigera
Analyze
Symbol: Wfs1
Name: wolframin ER transmembrane glycoprotein
RGD ID: 9029607
Description: ENCODES a protein that exhibits ATPase binding (ortholog); calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); endoplasmic reticulum calcium ion homeostasis (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant nonsyndromic deafness 6 (ortholog); autosomal dominant Wolfram syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); integral component of endoplasmic reticulum membrane (ortholog); integral component of synaptic vesicle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Wolfram syndrome 1 (wolframin); wolframin
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,902,454 - 3,924,610 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555143,902,508 - 3,924,281 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Wfs1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555143,902,454 - 3,924,610 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555143,902,508 - 3,924,281 (-)NCBIChiLan1.0ChiLan1.0
WFS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl46,269,849 - 6,303,265 (+)EnsemblGRCh38hg38GRCh38
GRCh3846,260,368 - 6,303,265 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3746,271,577 - 6,304,992 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3646,322,478 - 6,355,893 (+)NCBINCBI36hg18NCBI36
Build 3446,389,648 - 6,423,064NCBI
Celera46,172,234 - 6,205,670 (+)NCBI
Cytogenetic Map4p16.1NCBI
HuRef46,205,316 - 6,238,436 (+)NCBIHuRef
CHM1_146,269,525 - 6,302,942 (+)NCBICHM1_1
Wfs1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39537,123,448 - 37,146,326 (-)NCBIGRCm39mm39
GRCm39 Ensembl537,123,448 - 37,146,549 (-)Ensembl
GRCm38536,966,104 - 36,988,982 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl536,966,104 - 36,989,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv37537,357,343 - 37,380,221 (-)NCBIGRCm37mm9NCBIm37
MGSCv36537,254,356 - 37,277,158 (-)NCBImm8
Celera534,417,849 - 34,440,871 (-)NCBICelera
Cytogenetic Map5B3NCBI
Wfs1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21473,810,478 - 73,834,993 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1473,810,404 - 73,835,602 (+)Ensembl
Rnor_6.01478,640,707 - 78,665,224 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1478,640,620 - 78,665,966 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01478,606,172 - 78,630,689 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41479,379,680 - 79,404,003 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11479,389,637 - 79,406,394 (+)NCBI
Celera1472,756,725 - 72,781,236 (+)NCBICelera
Cytogenetic Map14q21NCBI
WFS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.146,345,960 - 6,379,094 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl46,345,864 - 6,379,287 (+)Ensemblpanpan1.1panPan2
WFS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11338,451,722 - 38,466,481 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1338,451,710 - 38,475,827 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1338,428,703 - 38,449,916 (-)NCBI
ROS_Cfam_1.01338,942,257 - 38,963,449 (-)NCBI
UMICH_Zoey_3.11338,633,035 - 38,659,609 (-)NCBI
UNSW_CanFamBas_1.01338,742,939 - 38,764,184 (-)NCBI
UU_Cfam_GSD_1.01339,217,791 - 39,239,032 (-)NCBI
Wfs1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528564,638,197 - 64,663,281 (+)NCBI
SpeTri2.0NW_00493647718,339,915 - 18,364,973 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WFS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl84,362,678 - 4,385,272 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.184,362,678 - 4,405,185 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.282,954,118 - 2,962,286 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WFS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12742,404,028 - 42,437,988 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2742,404,084 - 42,438,005 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604789,197,417 - 89,231,280 (+)NCBIVero_WHO_p1.0
Wfs1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475522,818,653 - 22,841,717 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016343   ⟹   ENSCLAP00000016179
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555143,902,454 - 3,924,610 (-)Ensembl
RefSeq Acc Id: XM_013506848   ⟹   XP_013362302
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555143,902,508 - 3,924,281 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362302 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013362302   ⟸   XM_013506848
- Sequence:
RefSeq Acc Id: ENSCLAP00000016179   ⟸   ENSCLAT00000016343


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011130 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016179 ENTREZGENE
Ensembl Transcript ENSCLAT00000016343 ENTREZGENE
NCBI Gene Wfs1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Wfs1  wolframin ER transmembrane glycoprotein    Wolfram syndrome 1 (wolframin)  Symbol and/or name change 5135510 APPROVED