Rabl2b (RAB, member of RAS oncogene family like 2B) - Rat Genome Database

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Gene: Rabl2b (RAB, member of RAS oncogene family like 2B) Chinchilla lanigera
Analyze
Symbol: Rabl2b
Name: RAB, member of RAS oncogene family like 2B
RGD ID: 9028754
Description: ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN cilium assembly (ortholog); flagellated sperm motility (ortholog); intraciliary transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAB, member of RAS oncogene family-like 2B; rab-like protein 2B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,738,999 - 33,756,374 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rabl2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541333,738,999 - 33,756,374 (-)NCBIChiLan1.0ChiLan1.0
RABL2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,767,506 - 50,783,636 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,767,501 - 50,783,667 (-)EnsemblGRCh38hg38GRCh38
GRCh372251,205,934 - 51,222,064 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,552,786 - 49,568,953 (-)NCBINCBI36Build 36hg18NCBI36
Build 342249,496,063 - 49,512,231NCBI
Cytogenetic Map22q13.33NCBI
HuRef2234,098,948 - 34,100,330 (-)NCBIHuRef
HuRef2234,104,363 - 34,105,131 (-)NCBIHuRef
CHM1_12251,164,663 - 51,180,834 (-)NCBICHM1_1
T2T-CHM13v2.02251,281,003 - 51,297,168 (-)NCBIT2T-CHM13v2.0
Rabl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,466,730 - 89,476,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,466,736 - 89,476,126 (-)EnsemblGRCm39 Ensembl
GRCm381589,582,527 - 89,591,960 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,582,533 - 89,591,923 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,412,958 - 89,422,354 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,410,304 - 89,419,632 (-)NCBIMGSCv36mm8
Celera1591,711,882 - 91,721,404 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.96NCBI
Rabl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,531,787 - 122,540,500 (-)NCBIGRCr8
mRatBN7.27120,652,175 - 120,660,906 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,652,175 - 120,660,783 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,404,183 - 122,412,800 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,630,327 - 124,638,944 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,605,610 - 124,614,239 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,556,056 - 130,564,764 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,556,047 - 130,564,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07130,241,548 - 130,250,243 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,899,252 - 127,907,861 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,933,484 - 127,942,091 (-)NCBI
Celera7117,123,756 - 117,132,370 (-)NCBICelera
Cytogenetic Map7q34NCBI
RABL2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,683,076 - 60,699,028 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,373,551 - 63,389,428 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02231,007,409 - 31,023,281 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RABL2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,555,009 - 16,571,207 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,534,975 - 16,557,279 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,283,619 - 17,305,932 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11017,008,408 - 17,030,686 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,331,246 - 17,353,544 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,462,939 - 17,485,276 (+)NCBIUU_Cfam_GSD_1.0
Rabl2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494560,900 - 75,273 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493662960,924 - 75,273 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC110260809
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.15104,510,606 - 104,525,994 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RABL2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11933,247,315 - 33,261,631 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604592,072,114 - 92,087,407 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rabl2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475212,782 - 33,152 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_005379599   ⟹   XP_005379656
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,738,999 - 33,756,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005379600   ⟹   XP_005379657
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,738,999 - 33,756,374 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511655   ⟹   XP_013367109
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,738,999 - 33,754,879 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511656   ⟹   XP_013367110
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,738,999 - 33,754,881 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379656 (Get FASTA)   NCBI Sequence Viewer  
  XP_005379657 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367109 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367110 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025074
  ENSCLAP00000025074.1
RefSeq Acc Id: XP_005379657   ⟸   XM_005379600
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005379656   ⟸   XM_005379599
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W586 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367110   ⟸   XM_013511656
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013367109   ⟸   XM_013511655
- Peptide Label: isoform X3
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017218 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025319 ENTREZGENE
  ENSCLAT00000025319.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  RabL2 UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene LOC102009705 ENTREZGENE
PANTHER PTHR47978 UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-33A UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2W586 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-28 Rabl2b  RAB, member of RAS oncogene family like 2B    RAB, member of RAS oncogene family-like 2B  Symbol and/or name change 5135510 APPROVED
2015-08-25 Rabl2b  RAB, member of RAS oncogene family-like 2B  LOC102009705  rab-like protein 2A-like  Symbol and/or name change 5135510 APPROVED