Tmed8 (transmembrane p24 trafficking protein family member 8) - Rat Genome Database

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Gene: Tmed8 (transmembrane p24 trafficking protein family member 8) Chinchilla lanigera
Analyze
Symbol: Tmed8
Name: transmembrane p24 trafficking protein family member 8
RGD ID: 9027808
Description: ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1C (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane emp24 protein transport domain containing 8
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,246,301 - 1,272,815 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,246,301 - 1,273,113 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Tmed8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,246,301 - 1,272,815 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,246,301 - 1,273,113 (-)NCBIChiLan1.0ChiLan1.0
TMED8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381477,335,021 - 77,377,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1477,335,029 - 77,377,094 (-)EnsemblGRCh38hg38GRCh38
GRCh371477,801,364 - 77,843,437 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,877,867 - 76,913,149 (-)NCBINCBI36Build 36hg18NCBI36
Build 341476,877,866 - 76,913,149NCBI
Celera1457,846,691 - 57,881,972 (-)NCBICelera
Cytogenetic Map14q24.3NCBI
HuRef1457,974,194 - 58,009,463 (-)NCBIHuRef
CHM1_11477,747,564 - 77,782,831 (-)NCBICHM1_1
T2T-CHM13v2.01471,544,384 - 71,586,469 (-)NCBIT2T-CHM13v2.0
Tmed8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,195,547 - 87,247,264 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,213,011 - 87,247,228 (-)EnsemblGRCm39 Ensembl
GRCm381287,166,242 - 87,200,457 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,166,237 - 87,200,454 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,507,192 - 88,541,179 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361288,055,345 - 88,089,332 (-)NCBIMGSCv36mm8
Celera1288,630,768 - 88,664,814 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.36NCBI
Tmed8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,537,921 - 112,572,199 (-)NCBIGRCr8
mRatBN7.26106,806,973 - 106,841,271 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6106,810,420 - 106,843,216 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.06111,188,938 - 111,222,866 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,194,951 - 111,222,858 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06120,473,103 - 120,506,844 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera6104,628,254 - 104,662,575 (-)NCBICelera
Cytogenetic Map6q31NCBI
TMED8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21578,418,890 - 78,461,242 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11477,635,394 - 77,677,746 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01457,888,235 - 57,930,615 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11477,089,637 - 77,132,037 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,096,398 - 77,132,037 (-)Ensemblpanpan1.1panPan2
TMED8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1850,149,099 - 50,163,574 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl850,156,060 - 50,164,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha849,836,775 - 49,869,837 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0850,382,641 - 50,415,947 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl850,387,795 - 50,415,938 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1850,045,477 - 50,078,545 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0850,068,840 - 50,101,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0850,466,520 - 50,499,588 (-)NCBIUU_Cfam_GSD_1.0
Tmed8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864025,892,367 - 25,911,257 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364886,165,874 - 6,176,595 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364886,159,119 - 6,176,584 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMED8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,411,264 - 100,449,298 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,411,259 - 100,449,350 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,507,882 - 106,540,567 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMED8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,595,024 - 54,636,235 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605342,781,717 - 42,828,610 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmed8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473424,526,414 - 24,562,599 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473424,526,410 - 24,569,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010447   ⟹   ENSCLAP00000010317
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554381,246,301 - 1,272,815 (-)Ensembl
RefSeq Acc Id: XM_005390200   ⟹   XP_005390257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,246,301 - 1,272,815 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517156   ⟹   XP_013372610
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,246,301 - 1,272,696 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517157   ⟹   XP_013372611
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554381,265,142 - 1,273,113 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390257 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372610 (Get FASTA)   NCBI Sequence Viewer  
  XP_013372611 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010317
  ENSCLAP00000010317.1
Reference Protein Sequences
RefSeq Acc Id: XP_005390257   ⟸   XM_005390200
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V4V2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372610   ⟸   XM_013517156
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013372611   ⟸   XM_013517157
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000010317   ⟸   ENSCLAT00000010447
Protein Domains
GOLD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007131 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010447 ENTREZGENE
  ENSCLAT00000010447.1 UniProtKB/TrEMBL
Gene3D-CATH GOLD domain UniProtKB/TrEMBL
InterPro GOLD_dom UniProtKB/TrEMBL
  GOLD_dom_sf UniProtKB/TrEMBL
NCBI Gene Tmed8 ENTREZGENE
PANTHER LD35087P UniProtKB/TrEMBL
  PROTEIN TMED8 UniProtKB/TrEMBL
Pfam GOLD_2 UniProtKB/TrEMBL
PROSITE GOLD UniProtKB/TrEMBL
Superfamily-SCOP SSF101576 UniProtKB/TrEMBL
UniProt A0A8C2V4V2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Tmed8  transmembrane p24 trafficking protein family member 8    transmembrane emp24 protein transport domain containing 8  Symbol and/or name change 5135510 APPROVED