Rubcnl (rubicon like autophagy enhancer)

Gene: Rubcnl (rubicon like autophagy enhancer) Chinchilla lanigera

Analyze

Symbol:

Rubcnl

Name:

rubicon like autophagy enhancer

RGD ID:

9025758

Description:

ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagosome-endosome fusion (ortholog); autophagosome-lysosome fusion (ortholog); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN autophagosome membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

KIAA0226-like ortholog; Kiaa0226l; rubicon like autophagy regulator; RUN and cysteine rich domain containing beclin 1 interacting protein like; uncharacterized protein KIAA0226-like homolog

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	140,922 - 206,951 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	140,999 - 206,570 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

prostate cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

autophagosome maturation (ISO)

autophagosome-endosome fusion (ISO)

autophagosome-lysosome fusion (ISO)

regulation of glycogen metabolic process (ISO)

regulation of lipid metabolic process (ISO)

Cellular Component

autophagosome membrane (ISO)

Molecular Function

phosphatidylinositol-3-phosphate binding (ISO)

phosphatidylinositol-4-phosphate binding (ISO)

phosphatidylinositol-5-phosphate binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rubcnl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	140,922 - 206,951 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	140,999 - 206,570 (-)	NCBI	ChiLan1.0	ChiLan1.0

RUBCNL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	46,334,681 - 46,390,042 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	46,334,681 - 46,438,190 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	46,908,816 - 46,964,177 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	45,814,137 - 45,859,636 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	45,815,100 - 45,859,385	NCBI
Celera	13	27,971,122 - 28,016,591 (-)	NCBI		Celera
Cytogenetic Map	13	q14.13	NCBI
HuRef	13	27,713,683 - 27,759,154 (-)	NCBI		HuRef
CHM1_1	13	46,884,932 - 46,930,398 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	45,555,685 - 45,611,047 (-)	NCBI		T2T-CHM13v2.0

Rubcnl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	75,253,467 - 75,289,977 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	75,253,467 - 75,289,972 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	75,015,987 - 75,052,537 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	75,016,027 - 75,052,532 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	75,415,834 - 75,452,339 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	73,736,988 - 73,786,572 (+)	NCBI		MGSCv36	mm8
Celera	14	72,515,864 - 72,552,426 (+)	NCBI		Celera
Cytogenetic Map	14	D3	NCBI
cM Map	14	39.53	NCBI

Rubcnl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	56,741,897 - 56,807,086 (+)	NCBI		GRCr8
mRatBN7.2	15	50,332,458 - 50,377,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	50,332,418 - 50,400,849 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	57,065,512 - 57,109,197 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	57,065,428 - 57,102,599 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	60,777,541 - 60,821,362 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	55,894,968 - 55,913,448 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	55,815,486 - 55,929,226 (+)	NCBI
Celera	15	49,964,999 - 50,008,655 (+)	NCBI		Celera
Cytogenetic Map	15	q11	NCBI

RUBCNL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	44,953,710 - 45,049,079 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	36,007,854 - 36,111,800 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	26,594,545 - 26,600,412 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

RUBCNL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	22	4,874,384 - 4,903,044 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	22	4,874,575 - 4,903,033 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	22	4,916,030 - 4,953,319 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	22	4,980,314 - 5,017,734 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	22	4,976,624 - 5,016,959 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	22	4,762,415 - 4,800,374 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	22	4,825,919 - 4,863,052 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	22	4,830,727 - 4,868,748 (+)	NCBI		UU_Cfam_GSD_1.0

Rubcnl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	156,428,120 - 156,521,426 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936857	839,418 - 870,961 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RUBCNL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	20,995,688 - 21,036,014 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	20,995,439 - 21,036,429 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	21,427,767 - 21,445,259 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RUBCNL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	24,400,507 - 24,445,514 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	24,399,500 - 24,430,601 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	19,554,526 - 19,600,019 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rubcnl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624748	8,605,272 - 8,652,785 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005387542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005387544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005387545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01029856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01029857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01029858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01029859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01387854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000005286 ⟹ ENSCLAP00000005190

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955431	140,922 - 206,951 (-)	Ensembl

RefSeq Acc Id:

XM_005387542 ⟹ XP_005387599

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 205,881 (-)	NCBI

Sequence:

show sequence

GGAGAGGGTGCTCGGCGGGAATCTCAGGGTGGGTCGGGCAGTGTCAGGGGCCCTTTGGATAGTG
TAGAAAGGGCGTCCACACGCGGACGTGGATTTTTGCGGTGTGGAGTTTGCAAAGCGAGGGCAAC
CCTGTGCTCGGAGTGGGTCGCGGAGGGCGCAGGAGAGGAGCCTCGGGCGCTGTAGGCTGCACCG
CCTCCTGTGAGTCCGAAGCCCGAGCTGGGGCAAGACCCCGTGCGCTCTTCCGGAATGCGTGGTT
TTCTCGGCTCCGAGCTCCGAGACGAGCACAGAGCTGAAGCCTGCAGACTCTTCTCTACCCAGTT
CAACCCTGTGGAGATGTCGTGCTAGAAAAACAGATATTTTGCTGCTTAACCGAGCTGAATTGGA
GCATGAAAGTGGCCAGCGCTTCAGACCTCCAGCTAGCTGGCCATGTGGTGAGCTCAAGGACAGC
ATTGGGTAGGACGACAGCCATCAGAGAGCTCCTCCTGTCTGTTCTGAAGGGTTCCCATTGGCTC
CAGCCTGGCAGGATGGTGTCACAGTCCATGGGCTGGCGGGATTCTCCTGTGATCCCCTGGGAAA
GGATCAGCCATGACTCTGGGGACAATGACAGTTCAGCGAGATTCCAGGACATGGGGCCTTCTCC
TTGCCAGTTAGATGTCAGGTTCACAAGGCACAAAGCTGCCTGGATTATGCCCCCGTGTGTGCAG
CAACCACTGCAGGACTTGGCCCCCCAGCTACAAACAGCAAGGAACAGTGAGAAGCACTCTGTGG
CCCATGCTGCCTCTCCCTTGGGCCCTTTGCTGCTGTCCCTCAATGACCTGGCAGAGACATCATT
ACCTGAGGATACCATGGACTTTGTGGGCAGAAGCACTGCCCATGGTTCAGGAGAAAGCAGTAAC
AGCTTCTCCTTGGCCTCCACAGAAGAGCCAATGGCACTCCCAGGAGAGTCTCAGCAGGCATCTC
TGTCCACAGAGACATCTCTGTCCAACATTTTGACCACTTCCCCGTTGTCTGGGGTTGACAGTGC
TGTGTCTGAGTCTTCCCACTTGACAGCTTCTGAGGATGAAGGTGCTATGCAAGGCAGTAGAAGA
GCCATTTCTTTGAATTCCTTTCCACCTGAGGTATTTGTGCTGCCTGTGGACATAGAAAAGGAAA
ATGCCCACTTTTATGTTGCAGATATGATTATATCAGAAATGGAGAAAATGAAGTGTAGCATTCT
GAGTCAGCAGCAGACACAGATCTGGGGCACAGCTGAAGCCAGCGGGTCACTTGGGGATGATCAA
GCTCACTCTGAAGCCACTTTCTACACTCATATGAAGCAAGAGTCTGGGTCTTCCACTTCTTCAG
ACAGTGGCTGTGAAGGTTGTGCTGTGTTACAGGTCAGCCCAATGGCTGAAGTACGTTGTTACAG
TAAGGTGCTCAAAGAGGCCAGCAAATGTGACCTGGATGAATTAGCCATTTTAAAACTTGAAGAA
TTTAATGATATTATAGAAACTCATAGATGTTCCTGCAGCTCCTCTACAAGTGTTACTTATGATC
CAGACTTCAGTTCTGCTGAGCGATTAGCCAGAGAGTTGTACCAAGTATTCTGGAAGTCCTGGAA
GTTTTCAGTAGTCAGTTATCAGCTGGCAGGTTCCCTGAAGGCAGCTAGCTCAATAGTTGTAAAT
GAAGAACATGTTCGAAAAGACTTTGAGTCCAGTATGGATGTAGTACAGGAAATTAAACTTAAGT
CTAGAATCAGAGGAACTGAAGACTGGGTGCCCCCTAGATTTCAAATCATATTTGATATTCATCC
ACCAGTCAAGAGAGAGCTGGGAGTGGTAGCCCAGAATTTTTTCTGTGCTGGCTGTGGAACTCTG
ATAGAGCCTAAGTTTGTGAAGAGGCTCAGGTACTGTGAGTACCTGGGAAAGTATTTCTGTGACT
TCTGCCACTCCTACTCGGAATCCTGCATCCCTGCGCGGATCCTGGTGATGTGGGACTTCAGGAA
GTACTATGTCAGCAACTTCTCCAAACAGCTGCTCGACCACATATGGCACCAGCCCATTTTCAAC
TTGCTGAGCATCAGCCACAACCTCTCCACAAAAGCCAAGGAACTGGACAGGGTGAAGGACATCC
AGGAGCAGCTTTTTCATATCAAGAAACTGTTGAAGACTTGCAGGTTTGCTGACAGCGCATTAAA
GGAGCTTGAGCAAGTGCCCAGACACTTGACTGATGAGCTCCACCTGTTCTCCCTGGAGGACCTC
GTCAGGACCAGGAAAGGGCTGCTGGCGCCCTTGCTCAGGGATGTTCTGAAAACTTCCTTGGCAC
ACGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTCATTTGTGAATTTTGCCGGAGTACAAC
TATCATCTTCCCATTTCAGACTGCAATATGTAGAAGATGTTCAGCATGCCAGGCTTGCTTTCAC
AAACACTGCTTCCAGTCCTCAGGCTGCCCACGGTGTGCACGGATCACAGCTCGGAGAAGACTTC
TGCAAGGTTTGCCGTTGACAGCTACATGATATTCAACAGTCTTGTGGAAAAGACTGTTAAACAT
GTCTTATGTAATAGCCATTTGTATCTTATTATCAGTCATATTGCTTTAGGCACCAAGATTCTCC
TCATTTTATATATTTGATGTTTTAGAAGAATGCAGTCTTTGTTATTAAGCAGAGTTGTTACTAA
TGGTGTTGTTTACAAATGTTTGACATTTTTGCTCCTATTGAGTTTTATAAAAATAAACTTGTTT
TTGATACTTTTAAAATTTCA

hide sequence

RefSeq Acc Id:

XM_005387544 ⟹ XP_005387601

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 206,570 (-)	NCBI

Sequence:

show sequence

ATTGGCCGCGCCTTGCAGCACCGAGATCTTGGAACTCTTGCGCTGCAGGCACACTTGCGCTGGG
GTTGCAGACTCTCCCCGCCAGAGGGCAAGATGACGACTGGGTTGGACCAAGGCTGTAGAGAGAA
GTCCCGGGGATGAGGACTGTTCCGGGTGCAGCGGCCGGGTAAACTGTCCGGCCGCGGATTTCAG
TGCAAATGGATCCAAATTCCTCACTCTTCAAGCAATTGTACTGGATCTAAATAGCGCTGCTTAG
GGTGTTAGAGACTGGGGACTCTGATTTCTGCCAGGCCAGCGCTTCAGACCTCCAGCTAGCTGGC
CATGTGGTGAGCTCAAGGACAGCATTGGGTAGGACGACAGCCATCAGAGAGCTCCTCCTGTCTG
TTCTGAAGGGTTCCCATTGGCTCCAGCCTGGCAGGATGGTGTCACAGTCCATGGGCTGGCGGGA
TTCTCCTGTGATCCCCTGGGAAAGGATCAGCCATGACTCTGGGGACAATGACAGTTCAGCGAGA
TTCCAGGACATGGGGCCTTCTCCTTGCCAGTTAGATGTCAGGTTCACAAGGCACAAAGCTGCCT
GGATTATGCCCCCGTGTGTGCAGCAACCACTGCAGGACTTGGCCCCCCAGCTACAAACAGCAAG
GAACAGTGAGAAGCACTCTGTGGCCCATGCTGCCTCTCCCTTGGGCCCTTTGCTGCTGTCCCTC
AATGACCTGGCAGAGACATCATTACCTGAGGATACCATGGACTTTGTGGGCAGAAGCACTGCCC
ATGGTTCAGGAGAAAGCAGTAACAGCTTCTCCTTGGCCTCCACAGAAGAGCCAATGGCACTCCC
AGGAGAGTCTCAGCAGGCATCTCTGTCCACAGAGACATCTCTGTCCAACATTTTGACCACTTCC
CCGTTGTCTGGGGTTGACAGTGCTGTGTCTGAGTCTTCCCACTTGACAGCTTCTGAGGATGAAG
GTGCTATGCAAGGCAGTAGAAGAGCCATTTCTTTGAATTCCTTTCCACCTGAGGTATTTGTGCT
GCCTGTGGACATAGAAAAGGAAAATGCCCACTTTTATGTTGCAGATATGATTATATCAGAAATG
GAGAAAATGAAGTGTAGCATTCTGAGTCAGCAGCAGACACAGATCTGGGGCACAGCTGAAGCCA
GCGGGTCACTTGGGGATGATCAAGCTCACTCTGAAGCCACTTTCTACACTCATATGAAGCAAGA
GTCTGGGTCTTCCACTTCTTCAGACAGTGGCTGTGAAGGTTGTGCTGTGTTACAGGTCAGCCCA
ATGGCTGAAGTACGTTGTTACAGTAAGGTGCTCAAAGAGGCCAGCAAATGTGACCTGGATGAAT
TAGCCATTTTAAAACTTGAAGAATTTAATGATATTATAGAAACTCATAGATGTTCCTGCAGCTC
CTCTACAAGTGTTACTTATGATCCAGACTTCAGTTCTGCTGAGCGATTAGCCAGAGAGTTGTAC
CAAGTATTCTGGAAGTCCTGGAAGTTTTCAGTAGTCAGTTATCAGCTGGCAGGTTCCCTGAAGG
CAGCTAGCTCAATAGTTGTAAATGAAGAACATGTTCGAAAAGACTTTGAGTCCAGTATGGATGT
AGTACAGGAAATTAAACTTAAGTCTAGAATCAGAGGAACTGAAGACTGGGTGCCCCCTAGATTT
CAAATCATATTTGATATTCATCCACCAGTCAAGAGAGAGCTGGGAGTGGTAGCCCAGAATTTTT
TCTGTGCTGGCTGTGGAACTCTGATAGAGCCTAAGTTTGTGAAGAGGCTCAGGTACTGTGAGTA
CCTGGGAAAGTATTTCTGTGACTTCTGCCACTCCTACTCGGAATCCTGCATCCCTGCGCGGATC
CTGGTGATGTGGGACTTCAGGAAGTACTATGTCAGCAACTTCTCCAAACAGCTGCTCGACCACA
TATGGCACCAGCCCATTTTCAACTTGCTGAGCATCAGCCACAACCTCTCCACAAAAGCCAAGGA
ACTGGACAGGGTGAAGGACATCCAGGAGCAGCTTTTTCATATCAAGAAACTGTTGAAGACTTGC
AGGTTTGCTGACAGCGCATTAAAGGAGCTTGAGCAAGTGCCCAGACACTTGACTGATGAGCTCC
ACCTGTTCTCCCTGGAGGACCTCGTCAGGACCAGGAAAGGGCTGCTGGCGCCCTTGCTCAGGGA
TGTTCTGAAAACTTCCTTGGCACACGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTCATT
TGTGAATTTTGCCGGAGTACAACTATCATCTTCCCATTTCAGACTGCAATATGTAGAAGATGTT
CAGCATGCCAGGCTTGCTTTCACAAACACTGCTTCCAGTCCTCAGGCTGCCCACGGTGTGCACG
GATCACAGCTCGGAGAAGACTTCTGCAAGGTTTGCCGTTGACAGCTACATGATATTCAACAGTC
TTGTGGAAAAGACTGTTAAACATGTCTTATGTAATAGCCATTTGTATCTTATTATCAGTCATAT
TGCTTTAGGCACCAAGATTCTCCTCATTTTATATATTTGATGTTTTAGAAGAATGCAGTCTTTG
TTATTAAGCAGAGTTGTTACTAATGGTGTTGTTTACAAATGTTTGACATTTTTGCTCCTATTGA
GTTTTATAAAAATAAACTTGTTTTTGATACTTTTAAAATTTCA

hide sequence

RefSeq Acc Id:

XM_005387545 ⟹ XP_005387602

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 206,114 (-)	NCBI

Sequence:

show sequence

CCACAAGGAGTCTCTCGGGTTCCTCTCGCCCTAGGGAGGTGGGGGTGGCCGGGGGCGCGGCGGC
CTCCGGGCGTCGCTTCCCTTCCGCGCTCCTGGTCTCTGGCGCTCCGGGCAACGCCGTGACCACG
GGTGGCTTCCTGGGACCGACGCGCTGCCTCCCCTAGCGCAGCTTCCTTCGCCGGCTGGAGACGC
GGCCGGACTCGCTGGCCAGCGCTTCAGACCTCCAGCTAGCTGGCCATGTGGTGAGCTCAAGGAC
AGCATTGGGTAGGACGACAGCCATCAGAGAGCTCCTCCTGTCTGTTCTGAAGGGTTCCCATTGG
CTCCAGCCTGGCAGGATGGTGTCACAGTCCATGGGCTGGCGGGATTCTCCTGTGATCCCCTGGG
AAAGGATCAGCCATGACTCTGGGGACAATGACAGTTCAGCGAGATTCCAGGACATGGGGCCTTC
TCCTTGCCAGTTAGATGTCAGGTTCACAAGGCACAAAGCTGCCTGGATTATGCCCCCGTGTGTG
CAGCAACCACTGCAGGACTTGGCCCCCCAGCTACAAACAGCAAGGAACAGTGAGAAGCACTCTG
TGGCCCATGCTGCCTCTCCCTTGGGCCCTTTGCTGCTGTCCCTCAATGACCTGGCAGAGACATC
ATTACCTGAGGATACCATGGACTTTGTGGGCAGAAGCACTGCCCATGGTTCAGGAGAAAGCAGT
AACAGCTTCTCCTTGGCCTCCACAGAAGAGCCAATGGCACTCCCAGGAGAGTCTCAGCAGGCAT
CTCTGTCCACAGAGACATCTCTGTCCAACATTTTGACCACTTCCCCGTTGTCTGGGGTTGACAG
TGCTGTGTCTGAGTCTTCCCACTTGACAGCTTCTGAGGATGAAGGTGCTATGCAAGGCAGTAGA
AGAGCCATTTCTTTGAATTCCTTTCCACCTGAGGTATTTGTGCTGCCTGTGGACATAGAAAAGG
AAAATGCCCACTTTTATGTTGCAGATATGATTATATCAGAAATGGAGAAAATGAAGTGTAGCAT
TCTGAGTCAGCAGCAGACACAGATCTGGGGCACAGCTGAAGCCAGCGGGTCACTTGGGGATGAT
CAAGCTCACTCTGAAGCCACTTTCTACACTCATATGAAGCAAGAGTCTGGGTCTTCCACTTCTT
CAGACAGTGGCTGTGAAGGTTGTGCTGTGTTACAGGTCAGCCCAATGGCTGAAGTACGTTGTTA
CAGTAAGGTGCTCAAAGAGGCCAGCAAATGTGACCTGGATGAATTAGCCATTTTAAAACTTGAA
GAATTTAATGATATTATAGAAACTCATAGATGTTCCTGCAGCTCCTCTACAAGTGTTACTTATG
ATCCAGACTTCAGTTCTGCTGAGCGATTAGCCAGAGAGTTGTACCAAGTATTCTGGAAGTCCTG
GAAGTTTTCAGTAGTCAGTTATCAGCTGGCAGGTTCCCTGAAGGCAGCTAGCTCAATAGTTGTA
AATGAAGAACATGTTCGAAAAGACTTTGAGTCCAGTATGGATGTAGTACAGGAAATTAAACTTA
AGTCTAGAATCAGAGGAACTGAAGACTGGGTGCCCCCTAGATTTCAAATCATATTTGATATTCA
TCCACCAGTCAAGAGAGAGCTGGGAGTGGTAGCCCAGAATTTTTTCTGTGCTGGCTGTGGAACT
CTGATAGAGCCTAAGTTTGTGAAGAGGCTCAGGTACTGTGAGTACCTGGGAAAGTATTTCTGTG
ACTTCTGCCACTCCTACTCGGAATCCTGCATCCCTGCGCGGATCCTGGTGATGTGGGACTTCAG
GAAGTACTATGTCAGCAACTTCTCCAAACAGCTGCTCGACCACATATGGCACCAGCCCATTTTC
AACTTGCTGAGCATCAGCCACAACCTCTCCACAAAAGCCAAGGAACTGGACAGGGTGAAGGACA
TCCAGGAGCAGCTTTTTCATATCAAGAAACTGTTGAAGACTTGCAGGTTTGCTGACAGCGCATT
AAAGGAGCTTGAGCAAGTGCCCAGACACTTGACTGATGAGCTCCACCTGTTCTCCCTGGAGGAC
CTCGTCAGGACCAGGAAAGGGCTGCTGGCGCCCTTGCTCAGGGATGTTCTGAAAACTTCCTTGG
CACACGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTCATTTGTGAATTTTGCCGGAGTAC
AACTATCATCTTCCCATTTCAGACTGCAATATGTAGAAGATGTTCAGCATGCCAGGCTTGCTTT
CACAAACACTGCTTCCAGTCCTCAGGCTGCCCACGGTGTGCACGGATCACAGCTCGGAGAAGAC
TTCTGCAAGGTTTGCCGTTGACAGCTACATGATATTCAACAGTCTTGTGGAAAAGACTGTTAAA
CATGTCTTATGTAATAGCCATTTGTATCTTATTATCAGTCATATTGCTTTAGGCACCAAGATTC
TCCTCATTTTATATATTTGATGTTTTAGAAGAATGCAGTCTTTGTTATTAAGCAGAGTTGTTAC
TAATGGTGTTGTTTACAAATGTTTGACATTTTTGCTCCTATTGAGTTTTATAAAAATAAACTTG
TTTTTGATACTTTTAAAATTTCA

hide sequence

RefSeq Acc Id:

XM_013515872 ⟹ XP_013371326

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 205,881 (-)	NCBI

Sequence:

show sequence

GGAGAGGGTGCTCGGCGGGAATCTCAGGGTGGGTCGGGCAGTGTCAGGGGCCCTTTGGATAGTG
TAGAAAGGGCGTCCACACGCGGACGTGGATTTTTGCGGTGTGGAGTTTGCAAAGCGAGGGCAAC
CCTGTGCTCGGAGTGGGTCGCGGAGGGCGCAGGAGAGGAGCCTCGGGCGCTGTAGGCTGCACCG
CCTCCTGTGAGTCCGAAGCCCGAGCTGGGGCAAGACCCCGTGCGCTCTTCCGGAATGCGTGGTT
TTCTCGGCTCCGAGCTCCGAGACGAGCACAGAGCTGAAGCCTGCAGACTCTTCTCTACCCAGTT
CAACCCTGTGGAGATGTCGTGCTAGAAAAACAGATATTTTGCTGCTTAACCGAGCTGAATTGGA
GCATGAAAGTGGAATTGAACTCACGACCTTGCACTTGCCGGGCAGGAGCTGTGCCGGCCAGCGC
TTCAGACCTCCAGCTAGCTGGCCATGTGGTGAGCTCAAGGACAGCATTGGGTAGGACGACAGCC
ATCAGAGAGCTCCTCCTGTCTGTTCTGAAGGGTTCCCATTGGCTCCAGCCTGGCAGGATGGTGT
CACAGTCCATGGGCTGGCGGGATTCTCCTGTGATCCCCTGGGAAAGGATCAGCCATGACTCTGG
GGACAATGACAGTTCAGCGAGATTCCAGGACATGGGGCCTTCTCCTTGCCAGTTAGATGTCAGG
TTCACAAGGCACAAAGCTGCCTGGATTATGCCCCCGTGTGTGCAGCAACCACTGCAGGACTTGG
CCCCCCAGCTACAAACAGCAAGGAACAGTGAGAAGCACTCTGTGGCCCATGCTGCCTCTCCCTT
GGGCCCTTTGCTGCTGTCCCTCAATGACCTGGCAGAGACATCATTACCTGAGGATACCATGGAC
TTTGTGGGCAGAAGCACTGCCCATGGTTCAGGAGAAAGCAGTAACAGCTTCTCCTTGGCCTCCA
CAGAAGAGCCAATGGCACTCCCAGGAGAGTCTCAGCAGGCATCTCTGTCCACAGAGACATCTCT
GTCCAACATTTTGACCACTTCCCCGTTGTCTGGGGTTGACAGTGCTGTGTCTGAGTCTTCCCAC
TTGACAGCTTCTGAGGATGAAGGTGCTATGCAAGGCAGTAGAAGAGCCATTTCTTTGAATTCCT
TTCCACCTGAGGTATTTGTGCTGCCTGTGGACATAGAAAAGGAAAATGCCCACTTTTATGTTGC
AGATATGATTATATCAGAAATGGAGAAAATGAAGTGTAGCATTCTGAGTCAGCAGCAGACACAG
ATCTGGGGCACAGCTGAAGCCAGCGGGTCACTTGGGGATGATCAAGCTCACTCTGAAGCCACTT
TCTACACTCATATGAAGCAAGAGTCTGGGTCTTCCACTTCTTCAGACAGTGGCTGTGAAGGTTG
TGCTGTGTTACAGGTCAGCCCAATGGCTGAAGTACGTTGTTACAGTAAGGTGCTCAAAGAGGCC
AGCAAATGTGACCTGGATGAATTAGCCATTTTAAAACTTGAAGAATTTAATGATATTATAGAAA
CTCATAGATGTTCCTGCAGCTCCTCTACAAGTGTTACTTATGATCCAGACTTCAGTTCTGCTGA
GCGATTAGCCAGAGAGTTGTACCAAGTATTCTGGAAGTCCTGGAAGTTTTCAGTAGTCAGTTAT
CAGCTGGCAGGTTCCCTGAAGGCAGCTAGCTCAATAGTTGTAAATGAAGAACATGTTCGAAAAG
ACTTTGAGTCCAGTATGGATGTAGTACAGGAAATTAAACTTAAGTCTAGAATCAGAGGAACTGA
AGACTGGGTGCCCCCTAGATTTCAAATCATATTTGATATTCATCCACCAGTCAAGAGAGAGCTG
GGAGTGGTAGCCCAGAATTTTTTCTGTGCTGGCTGTGGAACTCTGATAGAGCCTAAGTTTGTGA
AGAGGCTCAGGTACTGTGAGTACCTGGGAAAGTATTTCTGTGACTTCTGCCACTCCTACTCGGA
ATCCTGCATCCCTGCGCGGATCCTGGTGATGTGGGACTTCAGGAAGTACTATGTCAGCAACTTC
TCCAAACAGCTGCTCGACCACATATGGCACCAGCCCATTTTCAACTTGCTGAGCATCAGCCACA
ACCTCTCCACAAAAGCCAAGGAACTGGACAGGGTGAAGGACATCCAGGAGCAGCTTTTTCATAT
CAAGAAACTGTTGAAGACTTGCAGGTTTGCTGACAGCGCATTAAAGGAGCTTGAGCAAGTGCCC
AGACACTTGACTGATGAGCTCCACCTGTTCTCCCTGGAGGACCTCGTCAGGACCAGGAAAGGGC
TGCTGGCGCCCTTGCTCAGGGATGTTCTGAAAACTTCCTTGGCACACGTGGCTGGCTGTGAGCT
GTGTCAAGGAAAGGGCTTCATTTGTGAATTTTGCCGGAGTACAACTATCATCTTCCCATTTCAG
ACTGCAATATGTAGAAGATGTTCAGCATGCCAGGCTTGCTTTCACAAACACTGCTTCCAGTCCT
CAGGCTGCCCACGGTGTGCACGGATCACAGCTCGGAGAAGACTTCTGCAAGGTTTGCCGTTGAC
AGCTACATGATATTCAACAGTCTTGTGGAAAAGACTGTTAAACATGTCTTATGTAATAGCCATT
TGTATCTTATTATCAGTCATATTGCTTTAGGCACCAAGATTCTCCTCATTTTATATATTTGATG
TTTTAGAAGAATGCAGTCTTTGTTATTAAGCAGAGTTGTTACTAATGGTGTTGTTTACAAATGT
TTGACATTTTTGCTCCTATTGAGTTTTATAAAAATAAACTTGTTTTTGATACTTTTAAAATTTC
A

hide sequence

RefSeq Acc Id:

XM_013515873 ⟹ XP_013371327

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 206,114 (-)	NCBI

Sequence:

show sequence

CCACAAGGAGTCTCTCGGGTTCCTCTCGCCCTAGGGAGGTGGGGGTGGCCGGGGGCGCGGCGGC
CTCCGGGCGTCGCTTCCCTTCCGCGCTCCTGGTCTCTGGCGCTCCGGGCAACGCCGTGACCACG
GGTGGCTTCCTGGGACCGACGCGCTGCCTCCCCTAGCGCAGCTTCCTTCGCCGGCTGGAGACGC
GGCCGGACTCGCTGGAATTGAACTCACGACCTTGCACTTGCCGGGCAGGAGCTGTGCCGGGATC
CTACACACATCCTGAACTAAGAAGCAGAACCAGGTGGGCTGTGACCTGCTCCCACCACCATGAT
TCCCAGCTGAAACTCGTGGAGAGAGCCAGGCCAGCGCTTCAGACCTCCAGCTAGCTGGCCATGT
GGTGAGCTCAAGGACAGCATTGGGTAGGACGACAGCCATCAGAGAGCTCCTCCTGTCTGTTCTG
AAGGGTTCCCATTGGCTCCAGCCTGGCAGGATGGTGTCACAGTCCATGGGCTGGCGGGATTCTC
CTGTGATCCCCTGGGAAAGGATCAGCCATGACTCTGGGGACAATGACAGTTCAGCGAGATTCCA
GGACATGGGGCCTTCTCCTTGCCAGTTAGATGTCAGGTTCACAAGGCACAAAGCTGCCTGGATT
ATGCCCCCGTGTGTGCAGCAACCACTGCAGGACTTGGCCCCCCAGCTACAAACAGCAAGGAACA
GTGAGAAGCACTCTGTGGCCCATGCTGCCTCTCCCTTGGGCCCTTTGCTGCTGTCCCTCAATGA
CCTGGCAGAGACATCATTACCTGAGGATACCATGGACTTTGTGGGCAGAAGCACTGCCCATGGT
TCAGGAGAAAGCAGTAACAGCTTCTCCTTGGCCTCCACAGAAGAGCCAATGGCACTCCCAGGAG
AGTCTCAGCAGGCATCTCTGTCCACAGAGACATCTCTGTCCAACATTTTGACCACTTCCCCGTT
GTCTGGGGTTGACAGTGCTGTGTCTGAGTCTTCCCACTTGACAGCTTCTGAGGATGAAGGTGCT
ATGCAAGGCAGTAGAAGAGCCATTTCTTTGAATTCCTTTCCACCTGAGGTATTTGTGCTGCCTG
TGGACATAGAAAAGGAAAATGCCCACTTTTATGTTGCAGATATGATTATATCAGAAATGGAGAA
AATGAAGTGTAGCATTCTGAGTCAGCAGCAGACACAGATCTGGGGCACAGCTGAAGCCAGCGGG
TCACTTGGGGATGATCAAGCTCACTCTGAAGCCACTTTCTACACTCATATGAAGCAAGAGTCTG
GGTCTTCCACTTCTTCAGACAGTGGCTGTGAAGGTTGTGCTGTGTTACAGGTCAGCCCAATGGC
TGAAGTACGTTGTTACAGTAAGGTGCTCAAAGAGGCCAGCAAATGTGACCTGGATGAATTAGCC
ATTTTAAAACTTGAAGAATTTAATGATATTATAGAAACTCATAGATGTTCCTGCAGCTCCTCTA
CAAGTGTTACTTATGATCCAGACTTCAGTTCTGCTGAGCGATTAGCCAGAGAGTTGTACCAAGT
ATTCTGGAAGTCCTGGAAGTTTTCAGTAGTCAGTTATCAGCTGGCAGGTTCCCTGAAGGCAGCT
AGCTCAATAGTTGTAAATGAAGAACATGTTCGAAAAGACTTTGAGTCCAGTATGGATGTAGTAC
AGGAAATTAAACTTAAGTCTAGAATCAGAGGAACTGAAGACTGGGTGCCCCCTAGATTTCAAAT
CATATTTGATATTCATCCACCAGTCAAGAGAGAGCTGGGAGTGGTAGCCCAGAATTTTTTCTGT
GCTGGCTGTGGAACTCTGATAGAGCCTAAGTTTGTGAAGAGGCTCAGGTACTGTGAGTACCTGG
GAAAGTATTTCTGTGACTTCTGCCACTCCTACTCGGAATCCTGCATCCCTGCGCGGATCCTGGT
GATGTGGGACTTCAGGAAGTACTATGTCAGCAACTTCTCCAAACAGCTGCTCGACCACATATGG
CACCAGCCCATTTTCAACTTGCTGAGCATCAGCCACAACCTCTCCACAAAAGCCAAGGAACTGG
ACAGGGTGAAGGACATCCAGGAGCAGCTTTTTCATATCAAGAAACTGTTGAAGACTTGCAGGTT
TGCTGACAGCGCATTAAAGGAGCTTGAGCAAGTGCCCAGACACTTGACTGATGAGCTCCACCTG
TTCTCCCTGGAGGACCTCGTCAGGACCAGGAAAGGGCTGCTGGCGCCCTTGCTCAGGGATGTTC
TGAAAACTTCCTTGGCACACGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTCATTTGTGA
ATTTTGCCGGAGTACAACTATCATCTTCCCATTTCAGACTGCAATATGTAGAAGATGTTCAGCA
TGCCAGGCTTGCTTTCACAAACACTGCTTCCAGTCCTCAGGCTGCCCACGGTGTGCACGGATCA
CAGCTCGGAGAAGACTTCTGCAAGGTTTGCCGTTGACAGCTACATGATATTCAACAGTCTTGTG
GAAAAGACTGTTAAACATGTCTTATGTAATAGCCATTTGTATCTTATTATCAGTCATATTGCTT
TAGGCACCAAGATTCTCCTCATTTTATATATTTGATGTTTTAGAAGAATGCAGTCTTTGTTATT
AAGCAGAGTTGTTACTAATGGTGTTGTTTACAAATGTTTGACATTTTTGCTCCTATTGAGTTTT
ATAAAAATAAACTTGTTTTTGATACTTTTAAAATTTCA

hide sequence

RefSeq Acc Id:

XM_013515874 ⟹ XP_013371328

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 205,881 (-)	NCBI

Sequence:

show sequence

GGAGAGGGTGCTCGGCGGGAATCTCAGGGTGGGTCGGGCAGTGTCAGGGGCCCTTTGGATAGTG
TAGAAAGGGCGTCCACACGCGGACGTGGATTTTTGCGGTGTGGAGTTTGCAAAGCGAGGGCAAC
CCTGTGCTCGGAGTGGGTCGCGGAGGGCGCAGGAGAGGAGCCTCGGGCGCTGTAGGCTGCACCG
CCTCCTGTGAGTCCGAAGCCCGAGCTGGGGCAAGACCCCGTGCGCTCTTCCGGAATGCGTGGTT
TTCTCGGCTCCGAGCTCCGAGACGAGCACAGAGCTGAAGCCTGCAGACTCTTCTCTACCCAGTT
CAACCCTGTGGAGATGTCGTGCTAGAAAAACAGATATTTTGCTGCTTAACCGAGCTGAATTGGA
GCATGAAAGTGGAATTGAACTCACGACCTTGCACTTGCCGGGCAGGAGCTGTGCCGGCCAGCGC
TTCAGACCTCCAGCTAGCTGGCCATGTGGTGAGCTCAAGGACAGCATTGGGTAGGACGACAGCC
ATCAGAGAGCTCCTCCTGTCTGTTCTGAAGGGTTCCCATTGGCTCCAGCCTGGCAGGATGGTGT
CACAGTCCATGGGCTGGCGGGATTCTCCTGTGATCCCCTGGGAAAGGATCAGCCATGACTCTGG
GGACAATGACAGTTCAGCGAGATTCCAGGACATGGGGCCTTCTCCTTGCCAGTTAGATGTCAGG
TTCACAAGGCACAAAGCTGCCTGGATTATGCCCCCGTGTGTGCAGCAACCACTGCAGGACTTGG
CCCCCCAGCTACAAACAGCAAGGAACAGTGAGAAGCACTCTGTGGCCCATGCTGCCTCTCCCTT
GGGCCCTTTGCTGCTGTCCCTCAATGACCTGGCAGAGACATCATTACCTGAGGATACCATGGAC
TTTGTGGGCAGAAGCACTGCCCATGGTTCAGGAGAAAGCAGTAACAGCTTCTCCTTGGCCTCCA
CAGAAGAGCCAATGGCACTCCCAGGAGAGTCTCAGCAGGCATCTCTGTCCACAGAGACATCTCT
GTCCAACATTTTGACCACTTCCCCGTTGTCTGGGGTTGACAGTGCTGTGTCTGAGTCTTCCCAC
TTGACAGCTTCTGAGGATGAAGGTTGTGCTGTGTTACAGGTCAGCCCAATGGCTGAAGTACGTT
GTTACAGTAAGGTGCTCAAAGAGGCCAGCAAATGTGACCTGGATGAATTAGCCATTTTAAAACT
TGAAGAATTTAATGATATTATAGAAACTCATAGATGTTCCTGCAGCTCCTCTACAAGTGTTACT
TATGATCCAGACTTCAGTTCTGCTGAGCGATTAGCCAGAGAGTTGTACCAAGTATTCTGGAAGT
CCTGGAAGTTTTCAGTAGTCAGTTATCAGCTGGCAGGTTCCCTGAAGGCAGCTAGCTCAATAGT
TGTAAATGAAGAACATGTTCGAAAAGACTTTGAGTCCAGTATGGATGTAGTACAGGAAATTAAA
CTTAAGTCTAGAATCAGAGGAACTGAAGACTGGGTGCCCCCTAGATTTCAAATCATATTTGATA
TTCATCCACCAGTCAAGAGAGAGCTGGGAGTGGTAGCCCAGAATTTTTTCTGTGCTGGCTGTGG
AACTCTGATAGAGCCTAAGTTTGTGAAGAGGCTCAGGTACTGTGAGTACCTGGGAAAGTATTTC
TGTGACTTCTGCCACTCCTACTCGGAATCCTGCATCCCTGCGCGGATCCTGGTGATGTGGGACT
TCAGGAAGTACTATGTCAGCAACTTCTCCAAACAGCTGCTCGACCACATATGGCACCAGCCCAT
TTTCAACTTGCTGAGCATCAGCCACAACCTCTCCACAAAAGCCAAGGAACTGGACAGGGTGAAG
GACATCCAGGAGCAGCTTTTTCATATCAAGAAACTGTTGAAGACTTGCAGGTTTGCTGACAGCG
CATTAAAGGAGCTTGAGCAAGTGCCCAGACACTTGACTGATGAGCTCCACCTGTTCTCCCTGGA
GGACCTCGTCAGGACCAGGAAAGGGCTGCTGGCGCCCTTGCTCAGGGATGTTCTGAAAACTTCC
TTGGCACACGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTCATTTGTGAATTTTGCCGGA
GTACAACTATCATCTTCCCATTTCAGACTGCAATATGTAGAAGATGTTCAGCATGCCAGGCTTG
CTTTCACAAACACTGCTTCCAGTCCTCAGGCTGCCCACGGTGTGCACGGATCACAGCTCGGAGA
AGACTTCTGCAAGGTTTGCCGTTGACAGCTACATGATATTCAACAGTCTTGTGGAAAAGACTGT
TAAACATGTCTTATGTAATAGCCATTTGTATCTTATTATCAGTCATATTGCTTTAGGCACCAAG
ATTCTCCTCATTTTATATATTTGATGTTTTAGAAGAATGCAGTCTTTGTTATTAAGCAGAGTTG
TTACTAATGGTGTTGTTTACAAATGTTTGACATTTTTGCTCCTATTGAGTTTTATAAAAATAAA
CTTGTTTTTGATACTTTTAAAATTTCA

hide sequence

RefSeq Acc Id:

XM_013515875 ⟹ XP_013371329

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955431	140,999 - 185,491 (-)	NCBI

Sequence:

show sequence

CAACATTTTGACCACTTCCCCGTTGTCTGGGGTTGACAGTGCTGTGTCTGAGTCTTCCCACTTG
ACAGCTTCTGAGGATGAAGGAAAATGCCCACTTTTATGTTGCAGATATGATTATATCAGAAATG
GAGAAAATGAAGTGTAGCATTCTGAGTCAGCAGCAGACACAGATCTGGGGCACAGCTGAAGCCA
GCGGGTCACTTGGGGATGATCAAGCTCACTCTGAAGCCACTTTCTACACTCATATGAAGCAAGA
GTCTGGGTCTTCCACTTCTTCAGACAGTGGCTGTGAAGGTTGTGCTGTGTTACAGGTCAGCCCA
ATGGCTGAAGTACGTTGTTACAGTAAGGTGCTCAAAGAGGCCAGCAAATGTGACCTGGATGAAT
TAGCCATTTTAAAACTTGAAGAATTTAATGATATTATAGAAACTCATAGATGTTCCTGCAGCTC
CTCTACAAGTGTTACTTATGATCCAGACTTCAGTTCTGCTGAGCGATTAGCCAGAGAGTTGTAC
CAAGTATTCTGGAAGTCCTGGAAGTTTTCAGTAGTCAGTTATCAGCTGGCAGGTTCCCTGAAGG
CAGCTAGCTCAATAGTTGTAAATGAAGAACATGTTCGAAAAGACTTTGAGTCCAGTATGGATGT
AGTACAGGAAATTAAACTTAAGTCTAGAATCAGAGGAACTGAAGACTGGGTGCCCCCTAGATTT
CAAATCATATTTGATATTCATCCACCAGTCAAGAGAGAGCTGGGAGTGGTAGCCCAGAATTTTT
TCTGTGCTGGCTGTGGAACTCTGATAGAGCCTAAGTTTGTGAAGAGGCTCAGGTACTGTGAGTA
CCTGGGAAAGTATTTCTGTGACTTCTGCCACTCCTACTCGGAATCCTGCATCCCTGCGCGGATC
CTGGTGATGTGGGACTTCAGGAAGTACTATGTCAGCAACTTCTCCAAACAGCTGCTCGACCACA
TATGGCACCAGCCCATTTTCAACTTGCTGAGCATCAGCCACAACCTCTCCACAAAAGCCAAGGA
ACTGGACAGGGTGAAGGACATCCAGGAGCAGCTTTTTCATATCAAGAAACTGTTGAAGACTTGC
AGGTTTGCTGACAGCGCATTAAAGGAGCTTGAGCAAGTGCCCAGACACTTGACTGATGAGCTCC
ACCTGTTCTCCCTGGAGGACCTCGTCAGGACCAGGAAAGGGCTGCTGGCGCCCTTGCTCAGGGA
TGTTCTGAAAACTTCCTTGGCACACGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTCATT
TGTGAATTTTGCCGGAGTACAACTATCATCTTCCCATTTCAGACTGCAATATGTAGAAGATGTT
CAGCATGCCAGGCTTGCTTTCACAAACACTGCTTCCAGTCCTCAGGCTGCCCACGGTGTGCACG
GATCACAGCTCGGAGAAGACTTCTGCAAGGTTTGCCGTTGACAGCTACATGATATTCAACAGTC
TTGTGGAAAAGACTGTTAAACATGTCTTATGTAATAGCCATTTGTATCTTATTATCAGTCATAT
TGCTTTAGGCACCAAGATTCTCCTCATTTTATATATTTGATGTTTTAGAAGAATGCAGTCTTTG
TTATTAAGCAGAGTTGTTACTAATGGTGTTGTTTACAAATGTTTGACATTTTTGCTCCTATTGA
GTTTTATAAAAATAAACTTGTTTTTGATACTTTTAAAATTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005387599	(Get FASTA)	NCBI Sequence Viewer
	XP_005387601	(Get FASTA)	NCBI Sequence Viewer
	XP_005387602	(Get FASTA)	NCBI Sequence Viewer
	XP_013371326	(Get FASTA)	NCBI Sequence Viewer
	XP_013371327	(Get FASTA)	NCBI Sequence Viewer
	XP_013371328	(Get FASTA)	NCBI Sequence Viewer
	XP_013371329	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000005190
	ENSCLAP00000005190.1

RefSeq Acc Id:	XP_005387601 ⟸ XM_005387544
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UXN3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVSQSMGWRDSPVIPWERISHDSGDNDSSARFQDMGPSPCQLDVRFTRHKAAWIMPPCVQQPLQ DLAPQLQTARNSEKHSVAHAASPLGPLLLSLNDLAETSLPEDTMDFVGRSTAHGSGESSNSFSL ASTEEPMALPGESQQASLSTETSLSNILTTSPLSGVDSAVSESSHLTASEDEGAMQGSRRAISL NSFPPEVFVLPVDIEKENAHFYVADMIISEMEKMKCSILSQQQTQIWGTAEASGSLGDDQAHSE ATFYTHMKQESGSSTSSDSGCEGCAVLQVSPMAEVRCYSKVLKEASKCDLDELAILKLEEFNDI IETHRCSCSSSTSVTYDPDFSSAERLARELYQVFWKSWKFSVVSYQLAGSLKAASSIVVNEEHV RKDFESSMDVVQEIKLKSRIRGTEDWVPPRFQIIFDIHPPVKRELGVVAQNFFCAGCGTLIEPK FVKRLRYCEYLGKYFCDFCHSYSESCIPARILVMWDFRKYYVSNFSKQLLDHIWHQPIFNLLSI SHNLSTKAKELDRVKDIQEQLFHIKKLLKTCRFADSALKELEQVPRHLTDELHLFSLEDLVRTR KGLLAPLLRDVLKTSLAHVAGCELCQGKGFICEFCRSTTIIFPFQTAICRRCSACQACFHKHCF QSSGCPRCARITARRRLLQGLPLTAT hide sequence

RefSeq Acc Id:	XP_005387602 ⟸ XM_005387545
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UXN3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVSQSMGWRDSPVIPWERISHDSGDNDSSARFQDMGPSPCQLDVRFTRHKAAWIMPPCVQQPLQ DLAPQLQTARNSEKHSVAHAASPLGPLLLSLNDLAETSLPEDTMDFVGRSTAHGSGESSNSFSL ASTEEPMALPGESQQASLSTETSLSNILTTSPLSGVDSAVSESSHLTASEDEGAMQGSRRAISL NSFPPEVFVLPVDIEKENAHFYVADMIISEMEKMKCSILSQQQTQIWGTAEASGSLGDDQAHSE ATFYTHMKQESGSSTSSDSGCEGCAVLQVSPMAEVRCYSKVLKEASKCDLDELAILKLEEFNDI IETHRCSCSSSTSVTYDPDFSSAERLARELYQVFWKSWKFSVVSYQLAGSLKAASSIVVNEEHV RKDFESSMDVVQEIKLKSRIRGTEDWVPPRFQIIFDIHPPVKRELGVVAQNFFCAGCGTLIEPK FVKRLRYCEYLGKYFCDFCHSYSESCIPARILVMWDFRKYYVSNFSKQLLDHIWHQPIFNLLSI SHNLSTKAKELDRVKDIQEQLFHIKKLLKTCRFADSALKELEQVPRHLTDELHLFSLEDLVRTR KGLLAPLLRDVLKTSLAHVAGCELCQGKGFICEFCRSTTIIFPFQTAICRRCSACQACFHKHCF QSSGCPRCARITARRRLLQGLPLTAT hide sequence

RefSeq Acc Id:

XP_005387599 ⟸ XM_005387542

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKVASASDLQLAGHVVSSRTALGRTTAIRELLLSVLKGSHWLQPGRMVSQSMGWRDSPVIPWER
ISHDSGDNDSSARFQDMGPSPCQLDVRFTRHKAAWIMPPCVQQPLQDLAPQLQTARNSEKHSVA
HAASPLGPLLLSLNDLAETSLPEDTMDFVGRSTAHGSGESSNSFSLASTEEPMALPGESQQASL
STETSLSNILTTSPLSGVDSAVSESSHLTASEDEGAMQGSRRAISLNSFPPEVFVLPVDIEKEN
AHFYVADMIISEMEKMKCSILSQQQTQIWGTAEASGSLGDDQAHSEATFYTHMKQESGSSTSSD
SGCEGCAVLQVSPMAEVRCYSKVLKEASKCDLDELAILKLEEFNDIIETHRCSCSSSTSVTYDP
DFSSAERLARELYQVFWKSWKFSVVSYQLAGSLKAASSIVVNEEHVRKDFESSMDVVQEIKLKS
RIRGTEDWVPPRFQIIFDIHPPVKRELGVVAQNFFCAGCGTLIEPKFVKRLRYCEYLGKYFCDF
CHSYSESCIPARILVMWDFRKYYVSNFSKQLLDHIWHQPIFNLLSISHNLSTKAKELDRVKDIQ
EQLFHIKKLLKTCRFADSALKELEQVPRHLTDELHLFSLEDLVRTRKGLLAPLLRDVLKTSLAH
VAGCELCQGKGFICEFCRSTTIIFPFQTAICRRCSACQACFHKHCFQSSGCPRCARITARRRLL
QGLPLTAT

hide sequence

RefSeq Acc Id:	XP_013371327 ⟸ XM_013515873
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UXN3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVSQSMGWRDSPVIPWERISHDSGDNDSSARFQDMGPSPCQLDVRFTRHKAAWIMPPCVQQPLQ DLAPQLQTARNSEKHSVAHAASPLGPLLLSLNDLAETSLPEDTMDFVGRSTAHGSGESSNSFSL ASTEEPMALPGESQQASLSTETSLSNILTTSPLSGVDSAVSESSHLTASEDEGAMQGSRRAISL NSFPPEVFVLPVDIEKENAHFYVADMIISEMEKMKCSILSQQQTQIWGTAEASGSLGDDQAHSE ATFYTHMKQESGSSTSSDSGCEGCAVLQVSPMAEVRCYSKVLKEASKCDLDELAILKLEEFNDI IETHRCSCSSSTSVTYDPDFSSAERLARELYQVFWKSWKFSVVSYQLAGSLKAASSIVVNEEHV RKDFESSMDVVQEIKLKSRIRGTEDWVPPRFQIIFDIHPPVKRELGVVAQNFFCAGCGTLIEPK FVKRLRYCEYLGKYFCDFCHSYSESCIPARILVMWDFRKYYVSNFSKQLLDHIWHQPIFNLLSI SHNLSTKAKELDRVKDIQEQLFHIKKLLKTCRFADSALKELEQVPRHLTDELHLFSLEDLVRTR KGLLAPLLRDVLKTSLAHVAGCELCQGKGFICEFCRSTTIIFPFQTAICRRCSACQACFHKHCF QSSGCPRCARITARRRLLQGLPLTAT hide sequence

RefSeq Acc Id:

XP_013371328 ⟸ XM_013515874

- Peptide Label:

isoform X4

- Sequence:

show sequence

MKVELNSRPCTCRAGAVPASASDLQLAGHVVSSRTALGRTTAIRELLLSVLKGSHWLQPGRMVS
QSMGWRDSPVIPWERISHDSGDNDSSARFQDMGPSPCQLDVRFTRHKAAWIMPPCVQQPLQDLA
PQLQTARNSEKHSVAHAASPLGPLLLSLNDLAETSLPEDTMDFVGRSTAHGSGESSNSFSLAST
EEPMALPGESQQASLSTETSLSNILTTSPLSGVDSAVSESSHLTASEDEGCAVLQVSPMAEVRC
YSKVLKEASKCDLDELAILKLEEFNDIIETHRCSCSSSTSVTYDPDFSSAERLARELYQVFWKS
WKFSVVSYQLAGSLKAASSIVVNEEHVRKDFESSMDVVQEIKLKSRIRGTEDWVPPRFQIIFDI
HPPVKRELGVVAQNFFCAGCGTLIEPKFVKRLRYCEYLGKYFCDFCHSYSESCIPARILVMWDF
RKYYVSNFSKQLLDHIWHQPIFNLLSISHNLSTKAKELDRVKDIQEQLFHIKKLLKTCRFADSA
LKELEQVPRHLTDELHLFSLEDLVRTRKGLLAPLLRDVLKTSLAHVAGCELCQGKGFICEFCRS
TTIIFPFQTAICRRCSACQACFHKHCFQSSGCPRCARITARRRLLQGLPLTAT

hide sequence

RefSeq Acc Id:

XP_013371326 ⟸ XM_013515872

- Peptide Label:

isoform X1

- Sequence:

show sequence

MKVELNSRPCTCRAGAVPASASDLQLAGHVVSSRTALGRTTAIRELLLSVLKGSHWLQPGRMVS
QSMGWRDSPVIPWERISHDSGDNDSSARFQDMGPSPCQLDVRFTRHKAAWIMPPCVQQPLQDLA
PQLQTARNSEKHSVAHAASPLGPLLLSLNDLAETSLPEDTMDFVGRSTAHGSGESSNSFSLAST
EEPMALPGESQQASLSTETSLSNILTTSPLSGVDSAVSESSHLTASEDEGAMQGSRRAISLNSF
PPEVFVLPVDIEKENAHFYVADMIISEMEKMKCSILSQQQTQIWGTAEASGSLGDDQAHSEATF
YTHMKQESGSSTSSDSGCEGCAVLQVSPMAEVRCYSKVLKEASKCDLDELAILKLEEFNDIIET
HRCSCSSSTSVTYDPDFSSAERLARELYQVFWKSWKFSVVSYQLAGSLKAASSIVVNEEHVRKD
FESSMDVVQEIKLKSRIRGTEDWVPPRFQIIFDIHPPVKRELGVVAQNFFCAGCGTLIEPKFVK
RLRYCEYLGKYFCDFCHSYSESCIPARILVMWDFRKYYVSNFSKQLLDHIWHQPIFNLLSISHN
LSTKAKELDRVKDIQEQLFHIKKLLKTCRFADSALKELEQVPRHLTDELHLFSLEDLVRTRKGL
LAPLLRDVLKTSLAHVAGCELCQGKGFICEFCRSTTIIFPFQTAICRRCSACQACFHKHCFQSS
GCPRCARITARRRLLQGLPLTAT

hide sequence

RefSeq Acc Id:

XP_013371329 ⟸ XM_013515875

- Peptide Label:

isoform X5

- Sequence:

show sequence

MKENAHFYVADMIISEMEKMKCSILSQQQTQIWGTAEASGSLGDDQAHSEATFYTHMKQESGSS
TSSDSGCEGCAVLQVSPMAEVRCYSKVLKEASKCDLDELAILKLEEFNDIIETHRCSCSSSTSV
TYDPDFSSAERLARELYQVFWKSWKFSVVSYQLAGSLKAASSIVVNEEHVRKDFESSMDVVQEI
KLKSRIRGTEDWVPPRFQIIFDIHPPVKRELGVVAQNFFCAGCGTLIEPKFVKRLRYCEYLGKY
FCDFCHSYSESCIPARILVMWDFRKYYVSNFSKQLLDHIWHQPIFNLLSISHNLSTKAKELDRV
KDIQEQLFHIKKLLKTCRFADSALKELEQVPRHLTDELHLFSLEDLVRTRKGLLAPLLRDVLKT
SLAHVAGCELCQGKGFICEFCRSTTIIFPFQTAICRRCSACQACFHKHCFQSSGCPRCARITAR
RRLLQGLPLTAT

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RefSeq Acc Id:

ENSCLAP00000005190 ⟸ ENSCLAT00000005286

Protein Domains

Rubicon Homology

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000003683	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000005286	ENTREZGENE
	ENSCLAT00000005286.1	UniProtKB/TrEMBL
InterPro	RUBC_PIKBD	UniProtKB/TrEMBL
	Zf-RING_9	UniProtKB/TrEMBL
NCBI Gene	Kiaa0226l	ENTREZGENE
PANTHER	PHOX (PX) DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	PROTEIN ASSOCIATED WITH UVRAG AS AUTOPHAGY ENHANCER	UniProtKB/TrEMBL
Pfam	RUBC_PIKBD	UniProtKB/TrEMBL
	zf-RING_9	UniProtKB/TrEMBL
SMART	DUF4206	UniProtKB/TrEMBL
UniProt	A0A8C2UXN3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-01	Rubcnl	rubicon like autophagy enhancer		rubicon like autophagy regulator	Symbol and/or name change	5135510	APPROVED
2018-12-05	Rubcnl	rubicon like autophagy regulator		RUN and cysteine rich domain containing beclin 1 interacting protein like	Symbol and/or name change	5135510	APPROVED
2016-08-03	Rubcnl	RUN and cysteine rich domain containing beclin 1 interacting protein like	Kiaa0226l	KIAA0226-like ortholog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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