Mrps34 (mitochondrial ribosomal protein S34)

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Gene: Mrps34 (mitochondrial ribosomal protein S34) Chinchilla lanigera

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Symbol:

Mrps34

Name:

mitochondrial ribosomal protein S34

RGD ID:

9025385

Description:

ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN mitochondrial translation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 32 (ortholog); developmental and epileptic encephalopathy 1 (ortholog); epilepsy (ortholog); FOUND IN mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

28S ribosomal protein S34, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,496,639 - 15,497,757 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	15,496,639 - 15,497,757 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

combined oxidative phosphorylation deficiency 32 (ISO)

developmental and epileptic encephalopathy 1 (ISO)

epilepsy (ISO)

genetic disease (ISO)

idiopathic generalized epilepsy (ISO)

Leigh disease (ISO)

mitochondrial metabolism disease (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

tuberous sclerosis 2 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (ISO)

Cellular Component

mitochondrion (ISO)

Molecular Function

structural constituent of ribosome (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mrps34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,496,639 - 15,497,757 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	15,496,639 - 15,497,757 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPS34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	1,771,895 - 1,773,134 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	1,771,890 - 1,773,150 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	1,821,896 - 1,823,135 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	1,761,897 - 1,763,141 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	1,761,897 - 1,763,141	NCBI
Celera	16	2,034,171 - 2,035,419 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	1,744,788 - 1,746,036 (-)	NCBI		HuRef
CHM1_1	16	1,821,844 - 1,823,088 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	1,787,729 - 1,788,968 (-)	NCBI		T2T-CHM13v2.0

Mrps34
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	25,114,094 - 25,115,263 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	25,114,090 - 25,116,476 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	24,895,120 - 24,896,289 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	24,895,116 - 24,897,502 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	25,032,065 - 25,033,219 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	24,622,720 - 24,623,874 (+)	NCBI		MGSCv36	mm8
Celera	17	25,421,811 - 25,422,964 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.53	NCBI

Mrps34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,420,543 - 14,421,674 (+)	NCBI		GRCr8
mRatBN7.2	10	13,916,024 - 13,917,155 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,916,026 - 13,918,406 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	18,663,134 - 18,664,265 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,151,994 - 18,153,125 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,651,211 - 13,652,342 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,257,001 - 14,258,132 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,257,001 - 14,258,132 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	14,073,017 - 14,074,148 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	14,144,109 - 14,145,240 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	14,144,109 - 14,145,226 (+)	NCBI
Celera	10	13,595,232 - 13,596,363 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

MRPS34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	2,038,522 - 2,039,746 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	5,819,960 - 5,821,270 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	394,257 - 395,564 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	1,824,282 - 1,825,560 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	1,824,282 - 1,825,558 (-)	Ensembl	panpan1.1		panPan2

MRPS34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	39,130,597 - 39,131,643 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	39,130,561 - 39,131,648 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,369,262 - 40,370,275 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,446,788 - 39,447,801 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	39,446,814 - 39,448,236 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	39,123,490 - 39,124,503 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	39,096,071 - 39,097,084 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,574,522 - 39,575,532 (+)	NCBI		UU_Cfam_GSD_1.0

Mrps34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,487,749 - 104,488,918 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	2,220,475 - 2,221,714 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	2,220,492 - 2,221,716 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	40,193,033 - 40,195,018 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	40,194,078 - 40,195,316 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	41,658,025 - 41,659,263 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	1,680,898 - 1,682,159 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	1,681,228 - 1,682,151 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	29,403,969 - 29,405,347 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	479,011 - 480,067 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624913	479,012 - 480,067 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005391515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01037875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01034482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000022403 ⟹ ENSCLAP00000022198

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955442	15,496,639 - 15,497,757 (+)	Ensembl

RefSeq Acc Id:

XM_005391515 ⟹ XP_005391572

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955442	15,496,639 - 15,497,757 (+)	NCBI

Sequence:

show sequence

CTTCCGGCCGGGCCCGGACACCTTTGCCTTGGACACCAGCCGCTTCCGGTGTGGGAGGGCTCGG
GGCGCGCTAGTTTCCGGTGGGCTTCCGGCTCGGTTGCAACTATGGCACGTAAGAAGGTGAGGCC
GCGGCTGATCGCTGAGCTGGCCCGCCGCGTTCGTGCCCTGCGCGAGCAGCGGGAGCGGCCGAGC
GACTCGCAGCGCTACGCCCTGGACTACGAGACCCTGACGCGGCCGTACACTGGCCACCGGCTCC
CAGTGCGCGCCTGGGTCGATGTGCGCCGCGAGAGCCGCCTCTTCCAGTTGCTCAGCCGCCTGCC
GCGCTTCGGCCTGGGCCGCCTAGTCACGCGCAAGTCCTGGCTGTGGCAGCACGACGATCCGTGC
TACTGGCGCCTCACGCGCGTACTGCCCGACTACACGGCGCAGAATTTGGACCACGGGAAGGCCT
GGGGCGTCCTGACCTTCAAAGGGAAGACGGAGAGTGAGGCCCGGCAGATCCAGCATGTTATGCA
CCACGACTGGCGGGTGGTGCCCAAGCACGAGGAGGAGGCCTTCACAGCATTCACGCCAGGACCC
GAAGACGACGTGCGCCTCGTGCCCTATCCGCCACTGCTCCGCGCCATGATCCTCGCGGAACGGC
AGAAAAGTGGGAATCCTAGCACGGAGGAACCCCTGCTGAGCCTAGAGAGGACGCTCGCGGATCC
TTGGGACTACCCTGAGAAACTGGAGGCCAAGGGCAAGGCCAAGGGCACCCCGGTCTAACGTGCG
GGGACCGTGATGGACACTTAAGATCCTGCCTTTTGATGGAGAACGTTGGGGAGACCCTGGCGCC
CTGATACAAGGACCTGACTACGGGGCCCCGAGGCTGTACTGCAGGGAGCAGCGGGCTGGCAGTC
AAGACTCCCGGCAGCCCCTTCTCCGCACCTGCGGCCAGAAATAAACGCTCCAAATGGC

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Protein Sequences


Protein RefSeqs	XP_005391572	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022198
	ENSCLAP00000022198.1

RefSeq Acc Id:

XP_005391572 ⟸ XM_005391515

- UniProtKB:

A0A8C2W2A2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MARKKVRPRLIAELARRVRALREQRERPSDSQRYALDYETLTRPYTGHRLPVRAWVDVRRESRL
FQLLSRLPRFGLGRLVTRKSWLWQHDDPCYWRLTRVLPDYTAQNLDHGKAWGVLTFKGKTESEA
RQIQHVMHHDWRVVPKHEEEAFTAFTPGPEDDVRLVPYPPLLRAMILAERQKSGNPSTEEPLLS
LERTLADPWDYPEKLEAKGKAKGTPV

hide sequence

Ensembl Acc Id:

ENSCLAP00000022198 ⟸ ENSCLAT00000022403

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015224	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022403	ENTREZGENE
	ENSCLAT00000022403.1	UniProtKB/TrEMBL
InterPro	MRP-S34	UniProtKB/TrEMBL
NCBI Gene	Mrps34	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR28589	UniProtKB/TrEMBL
Pfam	MRP-S34	UniProtKB/TrEMBL
UniProt	A0A8C2W2A2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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