Ptprm (protein tyrosine phosphatase receptor type M) - Rat Genome Database

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Gene: Ptprm (protein tyrosine phosphatase receptor type M) Chinchilla lanigera
Analyze
Symbol: Ptprm
Name: protein tyrosine phosphatase receptor type M
RGD ID: 9025092
Description: ENCODES a protein that exhibits cadherin binding (ortholog); identical protein binding (ortholog); phosphatase activity (ortholog); INVOLVED IN homophilic cell adhesion via plasma membrane adhesion molecules (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of endothelial cell migration (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN adherens junction (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: receptor-type tyrosine-protein phosphatase mu
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554023,244,222 - 3,756,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554023,243,447 - 3,756,457 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ptprm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554023,244,222 - 3,756,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554023,243,447 - 3,756,457 (-)NCBIChiLan1.0ChiLan1.0
PTPRM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38187,567,316 - 8,406,856 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl187,566,782 - 8,406,861 (+)EnsemblGRCh38hg38GRCh38
GRCh37187,567,314 - 8,406,854 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36187,557,314 - 8,396,859 (+)NCBINCBI36Build 36hg18NCBI36
Build 34187,557,816 - 8,396,852NCBI
Celera187,451,391 - 8,291,215 (+)NCBICelera
Cytogenetic Map18p11.23NCBI
HuRef187,531,039 - 8,371,216 (+)NCBIHuRef
CHM1_1187,567,289 - 8,407,034 (+)NCBICHM1_1
T2T-CHM13v2.0187,730,572 - 8,570,006 (+)NCBIT2T-CHM13v2.0
Ptprm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391766,973,843 - 67,661,486 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1766,973,942 - 67,661,452 (-)EnsemblGRCm39 Ensembl
GRCm381766,666,848 - 67,354,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1766,666,947 - 67,354,457 (-)EnsemblGRCm38mm10GRCm38
MGSCv371767,016,188 - 67,703,799 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361766,572,488 - 67,259,332 (-)NCBIMGSCv36mm8
Celera1770,960,452 - 71,652,526 (-)NCBICelera
Cytogenetic Map17E1.1NCBI
cM Map1737.88NCBI
Ptprm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89114,086,380 - 114,791,000 (-)NCBIGRCr8
mRatBN7.29106,639,573 - 107,343,698 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl9106,639,573 - 107,343,698 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9115,034,215 - 115,735,168 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09120,156,426 - 120,857,356 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09118,500,097 - 119,201,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09114,846,095 - 115,555,261 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9114,846,095 - 115,555,261 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09114,341,760 - 115,047,495 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49105,784,922 - 106,503,148 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19106,019,977 - 106,025,031 (-)NCBI
Celera9103,813,416 - 104,503,006 (-)NCBICelera
Cytogenetic Map9q37NCBI
PTPRM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21730,046,539 - 30,873,100 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11815,739,131 - 16,565,623 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0185,879,556 - 6,706,824 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1188,205,978 - 9,030,683 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl188,206,677 - 9,030,286 (-)Ensemblpanpan1.1panPan2
PTPRM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1774,005,682 - 74,597,498 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl773,815,186 - 74,609,116 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha773,205,288 - 73,988,613 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0773,864,685 - 74,648,938 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl773,863,785 - 74,660,558 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1773,566,351 - 74,351,414 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0773,596,130 - 74,369,637 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0773,895,451 - 74,674,439 (+)NCBIUU_Cfam_GSD_1.0
Ptprm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494470,374,418 - 71,176,141 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936670890,310 - 1,692,041 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936670890,316 - 1,692,033 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl699,350,303 - 100,092,883 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1699,350,301 - 100,092,966 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2692,516,719 - 92,550,399 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11866,564,562 - 67,398,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1866,773,588 - 67,398,542 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605041,491,594 - 42,326,520 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptprm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477016,990,056 - 17,508,167 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477016,900,925 - 17,507,775 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017677   ⟹   ENSCLAP00000017505
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554023,244,222 - 3,756,925 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017678   ⟹   ENSCLAP00000017506
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554023,244,222 - 3,756,543 (-)Ensembl
RefSeq Acc Id: XM_005372618   ⟹   XP_005372675
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554023,243,447 - 3,756,457 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005372675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017505.1
  ENSCLAP00000017506
  ENSCLAP00000017506.1
Reference Protein Sequences
RefSeq Acc Id: XP_005372675   ⟸   XM_005372618
- UniProtKB: A0A8C2VTL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017505   ⟸   ENSCLAT00000017677
RefSeq Acc Id: ENSCLAP00000017506   ⟸   ENSCLAT00000017678
Protein Domains
Fibronectin type-III   Ig-like   MAM   Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012021 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017677.1 UniProtKB/TrEMBL
  ENSCLAT00000017678 ENTREZGENE
  ENSCLAT00000017678.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.200 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  3.90.190.10 UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
  MAM_dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  PTP_cat UniProtKB/TrEMBL
  R-PTP-mu_cat_rpt1 UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
NCBI Gene Ptprm ENTREZGENE
PANTHER PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TYPE, M UniProtKB/TrEMBL
  SUSHI DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
  PF00047 UniProtKB/TrEMBL
  Y_phosphatase UniProtKB/TrEMBL
PRINTS MAMDOMAIN UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
  MAM_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  MAM UniProtKB/TrEMBL
  PTPc UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2VQU9_CHILA UniProtKB/TrEMBL
  A0A8C2VTL2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 Ptprm  protein tyrosine phosphatase receptor type M    protein tyrosine phosphatase, receptor type M  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ptprm  protein tyrosine phosphatase, receptor type M    protein tyrosine phosphatase, receptor type, M  Symbol and/or name change 5135510 APPROVED