Phtf2 (putative homeodomain transcription factor 2) - Rat Genome Database

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Gene: Phtf2 (putative homeodomain transcription factor 2) Chinchilla lanigera
Analyze
Symbol: Phtf2
Name: putative homeodomain transcription factor 2
RGD ID: 9024014
Description: ASSOCIATED WITH Chromosome 7q11.23 Deletion Syndrome, Distal, 1.2-MB (ortholog); genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,344,526 - 7,423,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,344,526 - 7,442,802 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Phtf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,344,526 - 7,423,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,344,526 - 7,442,802 (-)NCBIChiLan1.0ChiLan1.0
PHTF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38777,798,773 - 77,957,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl777,798,773 - 77,957,503 (+)EnsemblGRCh38hg38GRCh38
GRCh37777,428,090 - 77,586,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36777,307,433 - 77,424,475 (+)NCBINCBI36Build 36hg18NCBI36
Build 34777,114,147 - 77,231,190NCBI
Celera772,128,704 - 72,287,454 (+)NCBICelera
Cytogenetic Map7q11.23-q21.11NCBI
HuRef772,031,196 - 72,189,845 (+)NCBIHuRef
CHM1_1777,358,352 - 77,517,058 (+)NCBICHM1_1
T2T-CHM13v2.0779,050,700 - 79,209,413 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,761,172 - 76,918,889 (+)NCBI
Phtf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39520,963,662 - 21,087,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl520,963,661 - 21,087,122 (-)EnsemblGRCm39 Ensembl
GRCm38520,758,664 - 20,882,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl520,758,663 - 20,882,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv37520,264,482 - 20,387,942 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36520,270,593 - 20,393,850 (-)NCBIMGSCv36mm8
Celera517,720,360 - 17,839,776 (-)NCBICelera
Cytogenetic Map5A3NCBI
cM Map59.83NCBI
Phtf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8415,107,341 - 15,222,683 (+)NCBIGRCr8
mRatBN7.2414,215,190 - 14,330,549 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx419,352,075 - 19,465,936 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0415,154,106 - 15,267,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0413,537,712 - 13,651,579 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0410,823,191 - 10,938,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,815,469 - 10,930,367 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,735,842 - 9,850,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.149,760,585 - 9,873,715 (+)NCBI
Celera49,776,667 - 9,890,034 (+)NCBICelera
Cytogenetic Map4q11NCBI
PHTF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2695,658,913 - 95,819,654 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17143,923,652 - 144,084,662 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0769,724,248 - 69,885,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1783,538,530 - 83,698,107 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl783,579,418 - 83,695,756 (+)Ensemblpanpan1.1panPan2
PHTF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,810,450 - 17,923,837 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,810,469 - 17,921,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1817,403,303 - 17,516,663 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01818,129,829 - 18,243,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,129,812 - 18,243,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,880,121 - 17,993,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,819,639 - 17,933,061 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,089,315 - 18,202,619 (+)NCBIUU_Cfam_GSD_1.0
Phtf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511860,032,716 - 60,178,093 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647921,197,474 - 21,302,060 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647921,156,501 - 21,302,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHTF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9102,221,326 - 102,348,696 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19102,221,033 - 102,348,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29112,741,454 - 112,868,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHTF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12170,974,679 - 71,134,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2170,974,474 - 71,134,673 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604232,789,719 - 32,949,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phtf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,981,590 - 27,070,866 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473926,965,769 - 27,070,808 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007833   ⟹   ENSCLAP00000007714
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554107,344,526 - 7,423,050 (-)Ensembl
RefSeq Acc Id: XM_005377206   ⟹   XP_005377263
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554107,344,526 - 7,423,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005377207   ⟹   XP_005377264
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554107,344,526 - 7,423,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005377208   ⟹   XP_005377265
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554107,344,526 - 7,423,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005377209   ⟹   XP_005377266
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554107,362,047 - 7,423,045 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013510512   ⟹   XP_013365966
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554107,344,526 - 7,442,802 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005377264   ⟸   XM_005377207
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UZB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005377263   ⟸   XM_005377206
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005377265   ⟸   XM_005377208
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005377266   ⟸   XM_005377209
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013365966   ⟸   XM_013510512
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000007714   ⟸   ENSCLAT00000007833
Protein Domains
PHTF1/2 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000007833 ENTREZGENE
  ENSCLAT00000007833.1 UniProtKB/TrEMBL
InterPro PHTF1/2 UniProtKB/TrEMBL
  PHTF1/2_N UniProtKB/TrEMBL
NCBI Gene Phtf2 ENTREZGENE
PANTHER PROTEIN PHTF2 UniProtKB/TrEMBL
  PTHR12680 UniProtKB/TrEMBL
Pfam Phtf-FEM1B_bdg UniProtKB/TrEMBL
UniProt A0A8C2UZB2 ENTREZGENE, UniProtKB/TrEMBL