Mrm2 (mitochondrial rRNA methyltransferase 2) - Rat Genome Database

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Gene: Mrm2 (mitochondrial rRNA methyltransferase 2) Chinchilla lanigera
Analyze
Symbol: Mrm2
Name: mitochondrial rRNA methyltransferase 2
RGD ID: 9021520
Description: ENCODES a protein that exhibits rRNA (uridine-2'-O-)-methyltransferase activity (ortholog); INVOLVED IN mitochondrial large ribosomal subunit assembly (ortholog); PARTICIPATES IN methionine cycle/metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); mitochondrial DNA depletion syndrome 17 (ortholog); FOUND IN nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: FtsJ RNA methyltransferase homolog 2 (E. coli); Ftsj2; rRNA methyltransferase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554609,673,550 - 9,678,233 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Mrm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554609,673,550 - 9,678,233 (-)NCBIChiLan1.0ChiLan1.0
MRM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,234,195 - 2,242,205 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,234,195 - 2,242,205 (-)EnsemblGRCh38hg38GRCh38
GRCh3772,273,830 - 2,281,840 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,240,452 - 2,248,359 (-)NCBINCBI36Build 36hg18NCBI36
Build 3472,047,168 - 2,055,074NCBI
Celera72,243,616 - 2,251,525 (-)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,193,218 - 2,201,116 (-)NCBIHuRef
CHM1_172,273,493 - 2,281,440 (-)NCBICHM1_1
T2T-CHM13v2.072,347,636 - 2,355,623 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,322,600 - 2,330,509 (-)NCBI
Mrm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,313,429 - 140,317,653 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,313,429 - 140,317,653 (-)EnsemblGRCm39 Ensembl
GRCm385140,327,674 - 140,331,898 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,327,674 - 140,331,898 (-)EnsemblGRCm38mm10GRCm38
MGSCv375140,803,628 - 140,807,852 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365140,580,148 - 140,584,372 (-)NCBIMGSCv36mm8
Celera5137,386,408 - 137,390,632 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map578.94NCBI
Mrm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,423,448 - 19,428,662 (+)NCBIGRCr8
mRatBN7.21214,309,556 - 14,314,759 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,251,941 - 14,314,118 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1215,117,364 - 15,122,268 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,740,862 - 15,745,766 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,767,573 - 14,772,477 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01216,398,749 - 16,403,656 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,398,749 - 16,403,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01218,391,358 - 18,396,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41214,782,565 - 14,787,472 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11214,812,359 - 15,137,000 (+)NCBI
Celera1216,068,304 - 16,073,211 (+)NCBICelera
Cytogenetic Map12q11NCBI
MRM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,200,225 - 7,208,216 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,524,927 - 55,532,918 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,503,688 - 2,511,660 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,605,371 - 2,613,154 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl72,605,371 - 2,613,125 (-)Ensemblpanpan1.1panPan2
MRM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,881,522 - 14,887,741 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,881,539 - 14,887,133 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha616,343,790 - 16,349,784 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0615,007,853 - 15,014,079 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl615,007,873 - 15,014,080 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1614,811,109 - 14,817,330 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,738,077 - 14,744,126 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0615,025,773 - 15,031,825 (+)NCBIUU_Cfam_GSD_1.0
Mrm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344143,044,319 - 143,049,766 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368231,423 - 7,065 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368231,679 - 7,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,560,167 - 1,567,379 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.131,560,161 - 1,567,351 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MRM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12819,336,935 - 19,355,221 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660902,371,433 - 2,380,208 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474027,523,666 - 27,541,281 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474027,524,262 - 27,528,516 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_005397823   ⟹   XP_005397880
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554609,673,550 - 9,678,233 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397880 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005397880   ⟸   XM_005397823
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Ftsj2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Mrm2  mitochondrial rRNA methyltransferase 2  Ftsj2  FtsJ RNA methyltransferase homolog 2 (E. coli)  Symbol and/or name change 5135510 APPROVED