Cth (cystathionine gamma-lyase) - Rat Genome Database

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Gene: Cth (cystathionine gamma-lyase) Chinchilla lanigera
Analyze
Symbol: Cth
Name: cystathionine gamma-lyase
RGD ID: 9020582
Description: ENCODES a protein that exhibits cystathionine beta-lyase activity (ortholog); cystathionine gamma-lyase activity (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); cysteine biosynthetic process (ortholog); cysteine biosynthetic process via cystathionine (ortholog); PARTICIPATES IN cystathioninuria pathway; cysteine metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); cataract (ortholog); cystathioninuria (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cystathionase (cystathionine gamma-lyase)
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542321,542,179 - 21,567,786 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542321,542,587 - 21,567,935 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Cth
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542321,542,179 - 21,567,786 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542321,542,587 - 21,567,935 (-)NCBIChiLan1.0ChiLan1.0
CTH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl170,411,218 - 70,439,851 (+)EnsemblGRCh38hg38GRCh38
GRCh38170,411,268 - 70,441,949 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37170,876,951 - 70,905,534 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36170,649,543 - 70,677,841 (+)NCBINCBI36hg18NCBI36
Build 34170,588,975 - 70,617,273NCBI
Celera169,166,835 - 69,195,464 (+)NCBI
Cytogenetic Map1p31.1NCBI
HuRef168,987,754 - 69,016,606 (+)NCBIHuRef
CHM1_1170,992,268 - 71,020,901 (+)NCBICHM1_1
Cth
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393157,599,885 - 157,630,718 (-)NCBIGRCm39mm39
GRCm39 Ensembl3157,599,885 - 157,630,714 (-)Ensembl
GRCm383157,894,248 - 157,925,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3157,894,248 - 157,925,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv373157,557,212 - 157,588,027 (-)NCBIGRCm37mm9NCBIm37
MGSCv363157,829,541 - 157,860,356 (-)NCBImm8
Celera3164,361,761 - 164,392,686 (-)NCBICelera
Cytogenetic Map3H4NCBI
Cth
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22246,975,888 - 247,002,234 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2246,975,894 - 247,002,234 (-)Ensembl
Rnor_6.02264,266,959 - 264,293,040 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2264,266,984 - 264,293,046 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02282,366,125 - 282,392,112 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42256,056,562 - 256,082,248 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12256,071,168 - 256,096,855 (-)NCBI
Celera2238,776,532 - 238,802,647 (-)NCBICelera
Cytogenetic Map2q45NCBI
CTH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1171,629,637 - 71,657,322 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,629,333 - 71,677,666 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0169,646,608 - 69,674,301 (+)NCBIMhudiblu_PPA_v0panPan3
CTH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1675,324,328 - 75,348,476 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl675,324,787 - 75,349,451 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha677,937,741 - 77,962,253 (-)NCBI
ROS_Cfam_1.0675,916,530 - 75,940,965 (-)NCBI
UMICH_Zoey_3.1675,469,819 - 75,494,076 (-)NCBI
UNSW_CanFamBas_1.0675,365,148 - 75,389,608 (-)NCBI
UU_Cfam_GSD_1.0675,865,823 - 75,890,332 (-)NCBI
Cth
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505882,845,843 - 82,870,103 (+)NCBI
SpeTri2.0NW_0049365911,619,446 - 1,643,667 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6142,435,690 - 142,486,367 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16142,454,922 - 142,486,352 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26132,027,445 - 132,050,236 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12062,672,820 - 62,718,608 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2062,690,906 - 62,718,980 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603354,904,075 - 54,931,820 (+)NCBIVero_WHO_p1.0
Cth
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474225,619,261 - 25,642,477 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007810   ⟹   ENSCLAP00000007691
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542321,542,179 - 21,567,786 (-)Ensembl
RefSeq Acc Id: XM_005385247   ⟹   XP_005385304
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542321,542,587 - 21,567,935 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385304 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005385304   ⟸   XM_005385247
- Sequence:
RefSeq Acc Id: ENSCLAP00000007691   ⟸   ENSCLAT00000007810


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005393 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000007691 ENTREZGENE
Ensembl Transcript ENSCLAT00000007810 ENTREZGENE
NCBI Gene Cth ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Cth  cystathionine gamma-lyase    cystathionase (cystathionine gamma-lyase)  Symbol and/or name change 5135510 APPROVED