Rspry1 (ring finger and SPRY domain containing 1) - Rat Genome Database

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Gene: Rspry1 (ring finger and SPRY domain containing 1) Chinchilla lanigera
Analyze
Symbol: Rspry1
Name: ring finger and SPRY domain containing 1
RGD ID: 9020243
Description: ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RING finger and SPRY domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,843,671 - 14,884,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,843,521 - 14,884,083 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rspry1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,843,671 - 14,884,742 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,843,521 - 14,884,083 (+)NCBIChiLan1.0ChiLan1.0
RSPRY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,186,152 - 57,240,469 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,186,137 - 57,240,469 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,220,241 - 57,274,381 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,777,742 - 55,830,451 (+)NCBINCBI36Build 36hg18NCBI36
Celera1641,720,063 - 41,772,638 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1643,089,815 - 43,142,600 (+)NCBIHuRef
CHM1_11658,627,738 - 58,681,196 (+)NCBICHM1_1
T2T-CHM13v2.01662,982,343 - 63,036,458 (+)NCBIT2T-CHM13v2.0
Rspry1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,328,569 - 95,386,905 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,328,565 - 95,386,903 (+)EnsemblGRCm39 Ensembl
GRCm38894,601,941 - 94,660,276 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,601,937 - 94,660,275 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,125,841 - 97,184,176 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,491,109 - 97,548,982 (+)NCBIMGSCv36mm8
Celera898,935,623 - 98,988,663 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.6NCBI
Rspry1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,358,423 - 10,408,988 (-)NCBIGRCr8
mRatBN7.21910,352,449 - 10,403,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,353,821 - 10,401,102 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,317,054 - 10,364,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,083,903 - 11,131,050 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,370,850 - 10,418,001 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,770,572 - 10,826,895 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,770,574 - 10,826,895 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,764,829 - 10,820,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,794,160 - 10,843,023 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,798,033 - 10,847,998 (-)NCBI
Celera1910,243,223 - 10,290,488 (-)NCBICelera
Cytogenetic Map19p13NCBI
RSPRY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,657,710 - 66,709,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,578,499 - 72,630,456 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,464,158 - 37,515,481 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,596,843 - 56,648,085 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,596,851 - 56,648,085 (+)Ensemblpanpan1.1panPan2
RSPRY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,139,908 - 59,186,340 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,141,107 - 59,186,724 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,768,089 - 55,814,514 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,678,215 - 59,724,611 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,678,192 - 59,724,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,509,629 - 56,555,927 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,516,879 - 57,563,294 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,410,958 - 58,457,378 (-)NCBIUU_Cfam_GSD_1.0
Rspry1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,250,412 - 50,294,665 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,294,340 - 9,340,268 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,294,421 - 9,338,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RSPRY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,154,417 - 19,204,826 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,154,413 - 19,204,827 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,159,489 - 17,195,780 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RSPRY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,137,942 - 43,187,327 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,155,963 - 43,188,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,131,948 - 33,181,777 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rspry1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,808,364 - 28,862,113 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,808,364 - 28,862,125 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006160   ⟹   ENSCLAP00000006057
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543314,843,671 - 14,884,742 (+)Ensembl
RefSeq Acc Id: XM_005388375   ⟹   XP_005388432
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,843,521 - 14,884,083 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005388377   ⟹   XP_005388434
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543314,843,671 - 14,884,083 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388432 (Get FASTA)   NCBI Sequence Viewer  
  XP_005388434 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006057
  ENSCLAP00000006057.1
Reference Protein Sequences
RefSeq Acc Id: XP_005388432   ⟸   XM_005388375
- UniProtKB: A0A8C2UVN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005388434   ⟸   XM_005388377
- UniProtKB: A0A8C2UVN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000006057   ⟸   ENSCLAT00000006160
Protein Domains
B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004287 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006160 ENTREZGENE
  ENSCLAT00000006160.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  RNF123/RSPRY1-like UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_RSPRY1 UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Rspry1 ENTREZGENE
PANTHER PTHR13363 UniProtKB/TrEMBL
  RING FINGER AND SPRY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SPRY UniProtKB/TrEMBL
  zf-C3HC4_3 UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A8C2UVN2 ENTREZGENE, UniProtKB/TrEMBL