Hs6st3 (heparan sulfate 6-O-sulfotransferase 3) - Rat Genome Database

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Gene: Hs6st3 (heparan sulfate 6-O-sulfotransferase 3) Chinchilla lanigera
Analyze
Symbol: Hs6st3
Name: heparan sulfate 6-O-sulfotransferase 3
RGD ID: 9019601
Description: ENCODES a protein that exhibits heparan sulfate 6-O-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process, enzymatic modification (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); holoprosencephaly 5 (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heparan-sulfate 6-O-sulfotransferase 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540413,468,128 - 14,128,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540413,461,906 - 14,129,089 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Hs6st3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540413,468,128 - 14,128,707 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540413,461,906 - 14,129,089 (-)NCBIChiLan1.0ChiLan1.0
HS6ST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381396,090,107 - 96,839,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1396,090,107 - 96,839,562 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,742,361 - 97,491,816 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361395,541,094 - 96,289,813 (+)NCBINCBI36Build 36hg18NCBI36
Build 341395,541,093 - 96,289,812NCBI
Celera1377,590,616 - 78,339,250 (+)NCBICelera
Cytogenetic Map13q32.1NCBI
HuRef1377,340,282 - 78,088,949 (+)NCBIHuRef
CHM1_11396,713,494 - 97,462,214 (+)NCBICHM1_1
T2T-CHM13v2.01395,294,349 - 96,043,658 (+)NCBIT2T-CHM13v2.0
Hs6st3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,374,902 - 120,226,864 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14119,375,753 - 120,107,227 (+)EnsemblGRCm39 Ensembl
GRCm3814119,137,516 - 119,869,815 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14119,138,341 - 119,869,815 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,537,487 - 120,269,037 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614118,273,483 - 119,004,997 (+)NCBIMGSCv36mm8
Celera14117,692,032 - 118,432,138 (+)NCBICelera
Cytogenetic Map14E4NCBI
Hs6st3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21596,281,502 - 97,000,804 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1596,281,646 - 97,000,462 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.015104,448,479 - 105,254,540 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,448,600 - 105,254,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,871,035 - 107,871,884 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.015108,635,603 - 108,663,069 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415104,157,904 - 104,914,126NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1595,121,926 - 95,826,748 (+)NCBICelera
Cytogenetic Map15q24NCBI
HS6ST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11396,414,415 - 97,150,741 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1396,414,409 - 97,148,398 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01377,256,399 - 77,998,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
HS6ST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12247,257,641 - 47,265,143 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2247,117,757 - 47,259,351 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2246,415,114 - 47,045,651 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02247,059,742 - 47,690,994 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12246,722,627 - 47,354,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02246,755,655 - 47,387,212 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02246,792,123 - 47,424,056 (+)NCBIUU_Cfam_GSD_1.0
Hs6st3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945182,140,408 - 182,794,486 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647213,157,669 - 13,811,747 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HS6ST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,516,097 - 66,187,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,516,180 - 66,193,410 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21173,192,012 - 73,199,496 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HS6ST3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,840,589 - 75,576,397 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604631,277,947 - 32,026,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hs6st3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,678,482 - 3,402,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248792,678,403 - 3,408,630 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005374096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01003484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01003501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01021825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBDF01188326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000008714   ⟹   ENSCLAP00000008587
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540413,468,128 - 14,128,707 (-)Ensembl
RefSeq Acc Id: XM_005374096   ⟹   XP_005374153
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540413,461,906 - 14,129,089 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374153 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374153   ⟸   XM_005374096
- UniProtKB: A0A8C2V311 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000008587   ⟸   ENSCLAT00000008714


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006006 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000008587 ENTREZGENE
  ENSCLAP00000008587.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000008714 ENTREZGENE
  ENSCLAT00000008714.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Heparan_SO4-6-sulfoTrfase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase UniProtKB/TrEMBL
NCBI Gene Hs6st3 ENTREZGENE
PANTHER PTHR12812 UniProtKB/TrEMBL
Pfam Sulfotransfer_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2V311 ENTREZGENE, UniProtKB/TrEMBL