Jph1 (junctophilin 1) - Rat Genome Database

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Gene: Jph1 (junctophilin 1) Chinchilla lanigera
Analyze
Symbol: Jph1
Name: junctophilin 1
RGD ID: 9019509
Description: ENCODES a protein that exhibits structural constituent of muscle (ortholog); INVOLVED IN muscle organ development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2K (ortholog); Charcot-Marie-Tooth disease type 4A (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); junctional membrane complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: junctophilin-1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,108,312 - 6,176,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,108,312 - 6,176,430 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Jph1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554446,108,312 - 6,176,814 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554446,108,312 - 6,176,430 (+)NCBIChiLan1.0ChiLan1.0
JPH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38874,234,700 - 74,321,540 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl874,234,700 - 74,321,540 (-)EnsemblGRCh38hg38GRCh38
GRCh37875,146,935 - 75,233,775 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36875,309,493 - 75,396,117 (-)NCBINCBI36Build 36hg18NCBI36
Build 34875,311,996 - 75,396,117NCBI
Celera871,144,786 - 71,231,414 (-)NCBICelera
Cytogenetic Map8q21.11NCBI
HuRef870,637,846 - 70,724,493 (-)NCBIHuRef
CHM1_1875,198,909 - 75,285,541 (-)NCBICHM1_1
T2T-CHM13v2.0874,663,960 - 74,750,834 (-)NCBIT2T-CHM13v2.0
Jph1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,012,328 - 17,168,132 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,034,784 - 17,168,113 (-)EnsemblGRCm39 Ensembl
GRCm38116,942,104 - 17,097,922 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,964,560 - 17,097,889 (-)EnsemblGRCm38mm10GRCm38
MGSCv37116,987,545 - 17,087,879 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36116,982,678 - 17,083,012 (-)NCBIMGSCv36mm8
Celera116,921,250 - 17,021,597 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.17NCBI
Jph1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr856,813,553 - 6,920,488 (+)NCBIGRCr8
mRatBN7.252,030,227 - 2,137,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl52,030,281 - 2,125,284 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx54,146,657 - 4,241,653 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.055,785,523 - 5,880,520 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.055,473,359 - 5,568,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.051,417,414 - 1,511,754 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl51,417,478 - 1,511,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.051,413,646 - 1,507,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.451,110,289 - 1,207,092 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.151,110,442 - 1,204,716 (+)NCBI
Celera51,665,186 - 1,760,181 (+)NCBICelera
Cytogenetic Map5q11NCBI
JPH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2789,977,880 - 90,064,163 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1865,605,684 - 65,691,948 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0870,768,560 - 70,855,068 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1872,413,794 - 72,500,252 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl872,413,794 - 72,505,309 (-)Ensemblpanpan1.1panPan2
JPH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12922,701,531 - 22,785,712 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2922,703,647 - 22,785,415 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2922,966,671 - 23,050,394 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02922,813,226 - 22,897,018 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2922,815,346 - 22,897,353 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12922,872,083 - 22,956,225 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02922,907,073 - 22,990,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02923,190,302 - 23,274,157 (-)NCBIUU_Cfam_GSD_1.0
Jph1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530356,492,214 - 56,580,189 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366482,868,419 - 2,956,370 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JPH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl461,628,299 - 61,716,544 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1461,628,304 - 61,716,550 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2467,369,034 - 67,423,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JPH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1869,839,696 - 69,919,915 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl869,839,460 - 69,919,950 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603971,452,965 - 71,533,094 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jph1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474416,937,092 - 17,013,862 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474416,937,138 - 17,013,765 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003305   ⟹   ENSCLAP00000003240
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554446,108,312 - 6,176,814 (+)Ensembl
RefSeq Acc Id: XM_013518218   ⟹   XP_013373672
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554446,108,312 - 6,176,430 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518219   ⟹   XP_013373673
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554446,108,312 - 6,176,430 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013518220   ⟹   XP_013373674
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554446,108,312 - 6,176,430 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373672 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373673 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373674 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003240
  ENSCLAP00000003240.1
Reference Protein Sequences
RefSeq Acc Id: XP_013373672   ⟸   XM_013518218
- Sequence:
RefSeq Acc Id: XP_013373673   ⟸   XM_013518219
- Sequence:
RefSeq Acc Id: XP_013373674   ⟸   XM_013518220
- Sequence:
RefSeq Acc Id: ENSCLAP00000003240   ⟸   ENSCLAT00000003305


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002323 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003305 ENTREZGENE
  ENSCLAT00000003305.1 UniProtKB/TrEMBL
Gene3D-CATH Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
InterPro Junctophilin UniProtKB/TrEMBL
  MORN UniProtKB/TrEMBL
NCBI Gene Jph1 ENTREZGENE
PANTHER JUNCTOPHILIN-1 UniProtKB/TrEMBL
  PTHR23085 UniProtKB/TrEMBL
Pfam MORN UniProtKB/TrEMBL
SMART MORN UniProtKB/TrEMBL
Superfamily-SCOP Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain UniProtKB/TrEMBL
UniProt A0A8C2UPC6_CHILA UniProtKB/TrEMBL