Sox13 (SRY-box transcription factor 13)

Gene: Sox13 (SRY-box transcription factor 13) Chinchilla lanigera

Analyze

Symbol:

Sox13

Name:

SRY-box transcription factor 13

RGD ID:

9019408

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN gamma-delta T cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); familial adult myoclonic epilepsy 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SRY (sex determining region Y)-box 13; SRY-box 13; transcription factor SOX-13

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,966,055 - 39,994,214 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	39,959,458 - 39,994,214 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

COVID-19 (ISO)

familial adult myoclonic epilepsy 5 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

gamma-delta T cell differentiation (ISO)

negative regulation of canonical Wnt signaling pathway (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

positive regulation of brown fat cell differentiation (ISO)

positive regulation of gamma-delta T cell differentiation (ISO)

regulation of DNA-templated transcription (ISO)

regulation of gamma-delta T cell differentiation (ISO)

spinal cord oligodendrocyte cell differentiation (ISO)

Cellular Component

cytoplasm (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription repressor activity (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

identical protein binding (ISO)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Sox13
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,966,055 - 39,994,214 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	39,959,458 - 39,994,214 (+)	NCBI	ChiLan1.0	ChiLan1.0

SOX13
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	204,073,115 - 204,127,743 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	204,073,115 - 204,127,743 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	204,042,243 - 204,096,871 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	202,308,869 - 202,363,494 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	200,773,902 - 200,828,526	NCBI
Celera	1	177,177,489 - 177,232,113 (+)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	175,207,788 - 175,262,190 (+)	NCBI		HuRef
CHM1_1	1	205,465,911 - 205,520,530 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	203,337,265 - 203,391,900 (+)	NCBI		T2T-CHM13v2.0

Sox13
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	133,310,038 - 133,352,159 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	133,310,041 - 133,352,115 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	133,382,300 - 133,424,459 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	133,382,303 - 133,424,377 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	135,278,877 - 135,320,789 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	135,209,849 - 135,220,764 (-)	NCBI		MGSCv36	mm8
Celera	1	135,994,724 - 136,036,968 (-)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.91	NCBI

Sox13
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	47,383,145 - 47,427,572 (-)	NCBI		GRCr8
mRatBN7.2	13	44,831,097 - 44,875,522 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	44,831,085 - 44,875,762 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	47,440,198 - 47,484,766 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	48,728,297 - 48,772,864 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	45,987,023 - 46,031,359 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	50,434,702 - 50,479,118 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	50,434,702 - 50,479,657 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	55,487,460 - 55,531,979 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	46,298,820 - 46,345,155 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	46,314,242 - 46,328,986 (-)	NCBI
Celera	13	45,163,489 - 45,207,838 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

SOX13
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	45,248,731 - 45,303,911 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	45,214,012 - 45,269,597 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	179,675,017 - 179,730,628 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	183,963,390 - 184,018,111 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	184,003,907 - 184,016,504 (+)	Ensembl	panpan1.1		panPan2

SOX13
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	702,974 - 721,340 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	523,481 - 720,195 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	798,529 - 815,690 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	705,300 - 716,303 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	519,330 - 717,371 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	701,321 - 712,098 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	1,092,743 - 1,103,513 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	1,286,221 - 1,304,778 (+)	NCBI		UU_Cfam_GSD_1.0

Sox13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	71,396,509 - 71,441,482 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	630,855 - 642,017 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	631,126 - 641,967 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SOX13
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	64,731,969 - 64,780,942 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	64,745,762 - 64,780,942 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	71,086,586 - 71,142,049 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SOX13
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	25,220,341 - 25,275,981 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	25,221,945 - 25,235,449 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	25,980,881 - 26,036,324 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sox13
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	6,848,218 - 6,888,467 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	6,848,218 - 6,887,666 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005375281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013522670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01006649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01006650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01186528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000017940 ⟹ ENSCLAP00000017765

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955406	39,966,055 - 39,994,214 (+)	Ensembl

RefSeq Acc Id:

XM_005375280 ⟹ XP_005375337

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	39,966,055 - 39,994,214 (+)	NCBI

Sequence:

show sequence

CAGAAGAGCATGGAGAAGGCAGGGCCAGCACCTGAGGCTCCTCGTCCTCCTGGCTGGCCTCCGT
CCCCACGCTTCCCAAGGCATGTCCCTGGCCCCCACCCCTGGAGGCAGGTCTCCTTCCTCCATCC
ACCCTTCACGATGTCCATGAGGAGCCCCGTCTCTGCCCAGCTGGCCCTGGATGGCGCTGGCACC
ATGGTGAACTGCACCATCAAGTCGGAGGAGAAGAAGGACCCTTGCCACGAGGCTCCCCAGGCTT
CGGCTGCCGTGGCTGAGCCCCAGCCTGGAGACCCCGCCCGGGACCCCCTGGATGTTGCTGACCC
CCAAGCTCCAGCTCAGGAGTGTAGCTCTCCAGAGAGCGGCGGGTCCCCAAAGCCGAAGCGACCG
GATGCCTCTGAGGCAGCTTCTGGAAGCCAGGAGAAGCTGGACTTCAATCGCAACCTGCAGGAGG
TTGTGCCGGCCATCGAGAAGCTGCTGTCCAGCGACTGGAAGGAGAGGTTTCTGGGACGAAGCTC
TGTGGAAACCAAAGATGTCAAAGGGACCCAAGAGAGCCTGGCAGAAAAGGAGCTGCAGCTTCTG
GTCATGATCCACCAGCTGTCCACCCTGCGGGACCAGCTCCTGACCGCCCACTCGGAGCAGAAGA
ACATGGCCGCCATGCTGTTTGAGAAGCAGCAGCAACAGATGGAGCTGGCCCGGCAGCAGCAGGA
GCAGATCGCCAAGCAACAGCAGCAGCTGATTCAGCAGCAGCATAAGATCAACCTCCTTCAGCAG
CAGATCCAGCAGGTCAACATGCCTTACGTCATGATTCCAGCCTTCCCCCCAAGTCACCAGCCTC
TGCCTGTCACCCCCGACTCCCAGCTGGCGCTGCCTATTCAGCCCATCCCTTGCAAACCAGTGGA
GTACCCACTGCAGCTGCTGCACAGCCCCCCTGCGCCTGTGGTGAAGAGGCCGGGGGCCATGGCC
GCGCACCACCCCCTGCAGGAGCCCTCCCAGCCTCTGAACCTCACCGCCAAGCCCAAGGCTCCTG
AGCTGCCCAACACCTCCAGCTCCCCCAGTCTGAAGATGGGCACCTGCGGCCCCCGGCCCCCCAG
CCACGGGGCTGCCCCACGGGACCGGCCATCCAGCCCACCCAGCCTACCCCTGGGCTTCCTGGGT
GAAGGGGACGCTGTCACCAAAGCCATCCAGGATGCCCGGCAGCTGCTGCACAGCCACAGCGGGG
CCTTGGAGAGTGCCCCCAGCACCCCCTTCCGCAAGGACCTCATCAGCTTGGATGCCTCCCCAGC
CAAGGAGCGGCTGGAGGAGAGCTGTGTGCACCCTCTGGAAGAAGCCATGCTGAGCTGTGACGTG
GACGGCTCCCGCCACTTCCCTGAGTCCCGAAACAACAGTCACATCAAGAGGCCCATGAATGCCT
TCATGGTGTGGGCCAAGGATGAGCGGAGGAAGATCCTGCAAGCCTTTCCGGACATGCACAACTC
CAGCATCAGCAAGATACTCGGCTCCCGTTGGAAGTCCATGAGCAACCAGGAGAAGCAGCCCTAC
TACGAGGAGCAGGCGCGGCTGAGCCGGCAGCACCTGGAGAAGTACCCCGACTACAAGTACAAGC
CGCGACCCAAGCGCACCTGCATCGTGGAGGGCAAGCGGCTGCGTGTGGGCGAATACAAGGCCCT
GATGAGGACCCGCCGCCAGGACGCCCGCCAGAGCTACGTGATCCCCTCACAGGCTGGCCAGGTA
CAGATGAGCTCCTCAGACATCCTGTACCCCCGGGCAGCAGGGGTGCCCCTGGCACAGCCTCTGG
TGGAGCACTATGTCCCCCAGAGCCTGGACCCCAACATGCCTGTCATCGTCAACACCTGCAGCCT
CAGGGAGGAGGGAGAGGGCGCCGACGACAGGCACTCGGTGGCCGATGGCGAGATGTACCGGTAC
AGCGGAGACGAGGACTCCGAGGGTGAAGAGAAGAGTGATGGGGAGCTGGTGGTGCTCACAGACT
GAGCCAGTGGCTGGCCTGGCCCTCCTCCCTGGGGCAGCCCCCCCCCACCCGCCCCGGGCACAGC
CAGCCGGCTTGGACTATGTTGGTACTTGGACGTGGGGCGCCCAGGGATGGTCAGAGCCGTGCAC
TTGTAGATGCACTGGCAAGGGGAGAGCCCTCCTCCCCGACAGCCTTGGGCACCCCGAGGAGCTC
TGGCCTTGGTGGCAGGACTTGCGTGGTAGTGCTGGGTGAGCTGGCTGAGCTCCCGGGCCCCGGC
AGGGGACACTGGGTGACCCTTCCCTCTGGCAGGCCCACCACCGCGGGGCGTGGCAGCTGTACAT
CTGTCCCCCCGGGTCACGTGCTTTGATTCCGTGCTTGTCCTGTGGGACCAACACTCCCTCCTAC
ACGCACACCCTGATCACTCCTGTCACCAGGATCACTGTATTCTGCAAAAGGGTCTGACTGTCCC
TCACCGTCAGTTTCTGCCAAGCCCTTTGTGCCTCTGGCTGCTGTGTGCGTGCGTGCGTGTGTGT
AGTGTGTGCGTGTACATGCGTGTGTTTTCATCCATTCATTGCACAAGGTATTTATTGCGTGCCC
ACTACGTGCCAGCCACTGTTGCTTCTCTGGGGGCCCCTTCTGTGCTTCTCTTTGTCCCCGAATT
GCTACCTCTTTGTCAGTCTGGGTGTCTCAGGTTCTGTGTGTCCTTGTGTGCGCCTCCGACCCCG
TCTCTCCGCAAGGCCCTCTCTCTCTCCCCTGTCCAAGCCTGGCCCTGCCCTCTGGATTTTCTGG
GTCTGTGTGGGCCCCTGGGCTGCCTCTGGGCCCCGTAGCCTTGCTGACCTCCCTCCCCGACTGT
CTTTCAGTTCCCACGAGCCTTTTTTAGCTCTGAGCAGGGTAAGAATGCGCCTCGGCTTCCACCA
GCTTTGTCCTGGTGCCCGACCCCTGGGCGCAGGCCGAGTCCCAGGAGTCGGGCAGAGTTGCAGT
CAATGACAGAGGTCCAGTGAGGGACCCCATGGCAGCTGGTCTCCATTCCTTACTCCCGGAGTTC
GCGGCGGGCGTTCCCTATTGCTGAAGACTCGGCTTCCCCTTCCCCACTGGCGTGAGCAGTTAAT
GTTTCCTAAGAACATCAGTCCCATTGGCACCTGACCCAAGGTCTCCCCACAGCTGGGGCCCAAT
TGGGGACCCCTAATGGGGACCTCTCATCCCTCAGGGCCTGCCCCCATCTCTCCCTTCCCCACGT
CCGTCCCTCCTTCCAGGCTGTTTCTTTTTTATGACTGTAAACATAGATAGTGCTTTATTTTGTT
AATGAGATAATGAGTAACTTAACCAGCACATTTGTTTTCTGATGGCATAATAAAGAGACCGTGT
CAGAATCGA

hide sequence

RefSeq Acc Id:

XM_005375281 ⟹ XP_005375338

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	39,966,054 - 39,994,214 (+)	NCBI

Sequence:

show sequence

CCAGAAGAGCATGGAGAAGGCAGGGCCAGCACCTGAGGCTCCTCGTCCTCCTGGCTGGCCTCCG
TCCCCACGCTTCCCAAGGCATGTCCCTGGCCCCCACCCCTGGAGGCAGGTCTCCTTCCTCCATC
CACCCTTCACGATGTCCATGAGGAGCCCCGTCTCTGCCCAGCTGGCCCTGGATGGCGCTGGCAC
CATGGTGAACTGCACCATCAAGTCGGAGGAGAAGAAGGACCCTTGCCACGAGGCTCCCCAGGCT
TCGGCTGCCGTGGCTGAGCCCCAGCCTGGAGACCCCGCCCGGGACCCCCTGGATGTTGCTGACC
CCCAAGCTCCAGCTCAGGAGTGTAGCTCTCCAGAGAGCGGCGGGTCCCCAAAGCCGAAGCGACC
GGATGCCTCTGAGGCAGCTTCTGGAAGCCAGGAGAAGCTGGACTTCAATCGCAACCTGCAGGAG
GTTGTGCCGGCCATCGAGAAGCTGCTGTCCAGCGACTGGAAGGAGAGGTTTCTGGGACGAAGCT
CTGTGGAAACCAAAGATGTCAAAGGGACCCAAGAGAGCCTGGCAGAAAAGGAGCTGCAGCTTCT
GGTCATGATCCACCAGCTGTCCACCCTGCGGGACCAGCTCCTGACCGCCCACTCGGAGCAGAAG
AACATGGCCGCCATGCTGTTTGAGAAGCAGCAGCAACAGATGGAGCTGGCCCGGCAGCAGCAGG
AGCAGATCGCCAAGCAACAGCAGCAGCTGATTCAGCAGCAGCATAAGATCAACCTCCTTCAGCA
GCAGATCCAGGTCAACATGCCTTACGTCATGATTCCAGCCTTCCCCCCAAGTCACCAGCCTCTG
CCTGTCACCCCCGACTCCCAGCTGGCGCTGCCTATTCAGCCCATCCCTTGCAAACCAGTGGAGT
ACCCACTGCAGCTGCTGCACAGCCCCCCTGCGCCTGTGGTGAAGAGGCCGGGGGCCATGGCCGC
GCACCACCCCCTGCAGGAGCCCTCCCAGCCTCTGAACCTCACCGCCAAGCCCAAGGCTCCTGAG
CTGCCCAACACCTCCAGCTCCCCCAGTCTGAAGATGGGCACCTGCGGCCCCCGGCCCCCCAGCC
ACGGGGCTGCCCCACGGGACCGGCCATCCAGCCCACCCAGCCTACCCCTGGGCTTCCTGGGTGA
AGGGGACGCTGTCACCAAAGCCATCCAGGATGCCCGGCAGCTGCTGCACAGCCACAGCGGGGCC
TTGGAGAGTGCCCCCAGCACCCCCTTCCGCAAGGACCTCATCAGCTTGGATGCCTCCCCAGCCA
AGGAGCGGCTGGAGGAGAGCTGTGTGCACCCTCTGGAAGAAGCCATGCTGAGCTGTGACGTGGA
CGGCTCCCGCCACTTCCCTGAGTCCCGAAACAACAGTCACATCAAGAGGCCCATGAATGCCTTC
ATGGTGTGGGCCAAGGATGAGCGGAGGAAGATCCTGCAAGCCTTTCCGGACATGCACAACTCCA
GCATCAGCAAGATACTCGGCTCCCGTTGGAAGTCCATGAGCAACCAGGAGAAGCAGCCCTACTA
CGAGGAGCAGGCGCGGCTGAGCCGGCAGCACCTGGAGAAGTACCCCGACTACAAGTACAAGCCG
CGACCCAAGCGCACCTGCATCGTGGAGGGCAAGCGGCTGCGTGTGGGCGAATACAAGGCCCTGA
TGAGGACCCGCCGCCAGGACGCCCGCCAGAGCTACGTGATCCCCTCACAGGCTGGCCAGGTACA
GATGAGCTCCTCAGACATCCTGTACCCCCGGGCAGCAGGGGTGCCCCTGGCACAGCCTCTGGTG
GAGCACTATGTCCCCCAGAGCCTGGACCCCAACATGCCTGTCATCGTCAACACCTGCAGCCTCA
GGGAGGAGGGAGAGGGCGCCGACGACAGGCACTCGGTGGCCGATGGCGAGATGTACCGGTACAG
CGGAGACGAGGACTCCGAGGGTGAAGAGAAGAGTGATGGGGAGCTGGTGGTGCTCACAGACTGA
GCCAGTGGCTGGCCTGGCCCTCCTCCCTGGGGCAGCCCCCCCCCACCCGCCCCGGGCACAGCCA
GCCGGCTTGGACTATGTTGGTACTTGGACGTGGGGCGCCCAGGGATGGTCAGAGCCGTGCACTT
GTAGATGCACTGGCAAGGGGAGAGCCCTCCTCCCCGACAGCCTTGGGCACCCCGAGGAGCTCTG
GCCTTGGTGGCAGGACTTGCGTGGTAGTGCTGGGTGAGCTGGCTGAGCTCCCGGGCCCCGGCAG
GGGACACTGGGTGACCCTTCCCTCTGGCAGGCCCACCACCGCGGGGCGTGGCAGCTGTACATCT
GTCCCCCCGGGTCACGTGCTTTGATTCCGTGCTTGTCCTGTGGGACCAACACTCCCTCCTACAC
GCACACCCTGATCACTCCTGTCACCAGGATCACTGTATTCTGCAAAAGGGTCTGACTGTCCCTC
ACCGTCAGTTTCTGCCAAGCCCTTTGTGCCTCTGGCTGCTGTGTGCGTGCGTGCGTGTGTGTAG
TGTGTGCGTGTACATGCGTGTGTTTTCATCCATTCATTGCACAAGGTATTTATTGCGTGCCCAC
TACGTGCCAGCCACTGTTGCTTCTCTGGGGGCCCCTTCTGTGCTTCTCTTTGTCCCCGAATTGC
TACCTCTTTGTCAGTCTGGGTGTCTCAGGTTCTGTGTGTCCTTGTGTGCGCCTCCGACCCCGTC
TCTCCGCAAGGCCCTCTCTCTCTCCCCTGTCCAAGCCTGGCCCTGCCCTCTGGATTTTCTGGGT
CTGTGTGGGCCCCTGGGCTGCCTCTGGGCCCCGTAGCCTTGCTGACCTCCCTCCCCGACTGTCT
TTCAGTTCCCACGAGCCTTTTTTAGCTCTGAGCAGGGTAAGAATGCGCCTCGGCTTCCACCAGC
TTTGTCCTGGTGCCCGACCCCTGGGCGCAGGCCGAGTCCCAGGAGTCGGGCAGAGTTGCAGTCA
ATGACAGAGGTCCAGTGAGGGACCCCATGGCAGCTGGTCTCCATTCCTTACTCCCGGAGTTCGC
GGCGGGCGTTCCCTATTGCTGAAGACTCGGCTTCCCCTTCCCCACTGGCGTGAGCAGTTAATGT
TTCCTAAGAACATCAGTCCCATTGGCACCTGACCCAAGGTCTCCCCACAGCTGGGGCCCAATTG
GGGACCCCTAATGGGGACCTCTCATCCCTCAGGGCCTGCCCCCATCTCTCCCTTCCCCACGTCC
GTCCCTCCTTCCAGGCTGTTTCTTTTTTATGACTGTAAACATAGATAGTGCTTTATTTTGTTAA
TGAGATAATGAGTAACTTAACCAGCACATTTGTTTTCTGATGGCATAATAAAGAGACCGTGTCA
GAATCGA

hide sequence

RefSeq Acc Id:

XM_013522670 ⟹ XP_013378124

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955406	39,959,458 - 39,992,863 (+)	NCBI

Sequence:

show sequence

TGGAAGGCGGCTGGGCAGGATGTCCATGAGGAGCCCCGTCTCTGCCCAGCTGGCCCTGGATGGC
GCTGGCACCATGGTGAACTGCACCATCAAGTCGGAGGAGAAGAAGGACCCTTGCCACGAGGCTC
CCCAGGCTTCGGCTGCCGTGGCTGAGCCCCAGCCTGGAGACCCCGCCCGGGACCCCCTGGATGT
TGCTGACCCCCAAGCTCCAGCTCAGGAGTGTAGCTCTCCAGAGAGCGGCGGGTCCCCAAAGCCG
AAGCGACCGGATGCCTCTGAGGCAGCTTCTGGAAGCCAGGAGAAGCTGGACTTCAATCGCAACC
TGCAGGAGGTTGTGCCGGCCATCGAGAAGCTGCTGTCCAGCGACTGGAAGGAGAGGTTTCTGGG
ACGAAGCTCTGTGGAAACCAAAGATGTCAAAGGGACCCAAGAGAGCCTGGCAGAAAAGGAGCTG
CAGCTTCTGGTCATGATCCACCAGCTGTCCACCCTGCGGGACCAGCTCCTGACCGCCCACTCGG
AGCAGAAGAACATGGCCGCCATGCTGTTTGAGAAGCAGCAGCAACAGATGGAGCTGGCCCGGCA
GCAGCAGGAGCAGATCGCCAAGCAACAGCAGCAGCTGATTCAGCAGCAGCATAAGATCAACCTC
CTTCAGCAGCAGATCCAGCAGGTCAACATGCCTTACGTCATGATTCCAGCCTTCCCCCCAAGTC
ACCAGCCTCTGCCTGTCACCCCCGACTCCCAGCTGGCGCTGCCTATTCAGCCCATCCCTTGCAA
ACCAGTGGAGTACCCACTGCAGCTGCTGCACAGCCCCCCTGCGCCTGTGGTGAAGAGGCCGGGG
GCCATGGCCGCGCACCACCCCCTGCAGGAGCCCTCCCAGCCTCTGAACCTCACCGCCAAGCCCA
AGGCTCCTGAGCTGCCCAACACCTCCAGCTCCCCCAGTCTGAAGATGGGCACCTGCGGCCCCCG
GCCCCCCAGCCACGGGGCTGCCCCACGGGACCGGCCATCCAGCCCACCCAGCCTACCCCTGGGC
TTCCTGGGTGAAGGGGACGCTGTCACCAAAGCCATCCAGGATGCCCGGCAGCTGCTGCACAGCC
ACAGCGGGGCCTTGGAGAGTGCCCCCAGCACCCCCTTCCGCAAGGACCTCATCAGCTTGGATGC
CTCCCCAGCCAAGGAGCGGCTGGAGGAGAGCTGTGTGCACCCTCTGGAAGAAGCCATGCTGAGC
TGTGACGTGGACGGCTCCCGCCACTTCCCTGAGTCCCGAAACAACAGTCACATCAAGAGGCCCA
TGAATGCCTTCATGGTGTGGGCCAAGGATGAGCGGAGGAAGATCCTGCAAGCCTTTCCGGACAT
GCACAACTCCAGCATCAGCAAGATACTCGGCTCCCGTTGGAAGTCCATGAGCAACCAGGAGAAG
CAGCCCTACTACGAGGAGCAGGCGCGGCTGAGCCGGCAGCACCTGGAGAAGTACCCCGACTACA
AGTACAAGCCGCGACCCAAGCGCACCTGCATCGTGGAGGGCAAGCGGCTGCGTGTGGGCGAATA
CAAGGCCCTGATGAGGACCCGCCGCCAGGACGCCCGCCAGAGCTACGTGATCCCCTCACAGGCT
GGCCAGGTACAGATGAGCTCCTCAGACATCCTGTACCCCCGGGCAGCAGGGGTGCCCCTGGCAC
AGCCTCTGGTGGAGCACTATGTCCCCCAGAGCCTGGACCCCAACATGCCTGTCATCGTCAACAC
CTGCAGCCTCAGGGAGGAGGGAGAGGGCGCCGACGACAGGCACTCGGTGGCCGATGGCGAGATG
TACCGGTACAGCGGAGACGAGGACTCCGAGGGTGAAGAGAAGAGTGATGGGGAGCTGGTGGTGC
TCACAGACTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005375337	(Get FASTA)	NCBI Sequence Viewer
	XP_005375338	(Get FASTA)	NCBI Sequence Viewer
	XP_013378124	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000017765
	ENSCLAP00000017765.1

RefSeq Acc Id:

XP_005375338 ⟸ XM_005375281

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEKAGPAPEAPRPPGWPPSPRFPRHVPGPHPWRQVSFLHPPFTMSMRSPVSAQLALDGAGTMVN
CTIKSEEKKDPCHEAPQASAAVAEPQPGDPARDPLDVADPQAPAQECSSPESGGSPKPKRPDAS
EAASGSQEKLDFNRNLQEVVPAIEKLLSSDWKERFLGRSSVETKDVKGTQESLAEKELQLLVMI
HQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQ
VNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRPGAMAAHHP
LQEPSQPLNLTAKPKAPELPNTSSSPSLKMGTCGPRPPSHGAAPRDRPSSPPSLPLGFLGEGDA
VTKAIQDARQLLHSHSGALESAPSTPFRKDLISLDASPAKERLEESCVHPLEEAMLSCDVDGSR
HFPESRNNSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQ
ARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPSQAGQVQMSS
SDILYPRAAGVPLAQPLVEHYVPQSLDPNMPVIVNTCSLREEGEGADDRHSVADGEMYRYSGDE
DSEGEEKSDGELVVLTD

hide sequence

RefSeq Acc Id:

XP_005375337 ⟸ XM_005375280

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEKAGPAPEAPRPPGWPPSPRFPRHVPGPHPWRQVSFLHPPFTMSMRSPVSAQLALDGAGTMVN
CTIKSEEKKDPCHEAPQASAAVAEPQPGDPARDPLDVADPQAPAQECSSPESGGSPKPKRPDAS
EAASGSQEKLDFNRNLQEVVPAIEKLLSSDWKERFLGRSSVETKDVKGTQESLAEKELQLLVMI
HQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQ
QVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLLHSPPAPVVKRPGAMAAHH
PLQEPSQPLNLTAKPKAPELPNTSSSPSLKMGTCGPRPPSHGAAPRDRPSSPPSLPLGFLGEGD
AVTKAIQDARQLLHSHSGALESAPSTPFRKDLISLDASPAKERLEESCVHPLEEAMLSCDVDGS
RHFPESRNNSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEE
QARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRTRRQDARQSYVIPSQAGQVQMS
SSDILYPRAAGVPLAQPLVEHYVPQSLDPNMPVIVNTCSLREEGEGADDRHSVADGEMYRYSGD
EDSEGEEKSDGELVVLTD

hide sequence

RefSeq Acc Id:	XP_013378124 ⟸ XM_013522670
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2YRE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSMRSPVSAQLALDGAGTMVNCTIKSEEKKDPCHEAPQASAAVAEPQPGDPARDPLDVADPQAP AQECSSPESGGSPKPKRPDASEAASGSQEKLDFNRNLQEVVPAIEKLLSSDWKERFLGRSSVET KDVKGTQESLAEKELQLLVMIHQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIA KQQQQLIQQQHKINLLQQQIQQVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPL QLLHSPPAPVVKRPGAMAAHHPLQEPSQPLNLTAKPKAPELPNTSSSPSLKMGTCGPRPPSHGA APRDRPSSPPSLPLGFLGEGDAVTKAIQDARQLLHSHSGALESAPSTPFRKDLISLDASPAKER LEESCVHPLEEAMLSCDVDGSRHFPESRNNSHIKRPMNAFMVWAKDERRKILQAFPDMHNSSIS KILGSRWKSMSNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCIVEGKRLRVGEYKALMRT RRQDARQSYVIPSQAGQVQMSSSDILYPRAAGVPLAQPLVEHYVPQSLDPNMPVIVNTCSLREE GEGADDRHSVADGEMYRYSGDEDSEGEEKSDGELVVLTD hide sequence

RefSeq Acc Id:

ENSCLAP00000017765 ⟸ ENSCLAT00000017940

Protein Domains

HMG box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012187	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000017940	ENTREZGENE
	ENSCLAT00000017940.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.30.10	UniProtKB/TrEMBL
InterPro	HMG_box_dom	UniProtKB/TrEMBL
	HMG_box_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Sox13	ENTREZGENE
PANTHER	FI18025P1	UniProtKB/TrEMBL
	PTHR45789:SF4	UniProtKB/TrEMBL
Pfam	HMG_box	UniProtKB/TrEMBL
PROSITE	HMG_BOX_2	UniProtKB/TrEMBL
SMART	HMG	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47095	UniProtKB/TrEMBL
UniProt	A0A8C2YRE3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-06-18	Sox13	SRY-box transcription factor 13	Sox13	SRY-box 13	Symbol and/or name change	5135510	APPROVED
2016-08-16	Sox13	SRY-box 13		SRY (sex determining region Y)-box 13	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar