Sox13 (SRY-box transcription factor 13) - Rat Genome Database

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Gene: Sox13 (SRY-box transcription factor 13) Chinchilla lanigera
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Symbol: Sox13
Name: SRY-box transcription factor 13
RGD ID: 9019408
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN gamma-delta T cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: SRY (sex determining region Y)-box 13; SRY-box 13; transcription factor SOX-13
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,966,055 - 39,994,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,959,458 - 39,994,214 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Sox13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,966,055 - 39,994,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,959,458 - 39,994,214 (+)NCBIChiLan1.0ChiLan1.0
SOX13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1204,073,115 - 204,127,743 (+)EnsemblGRCh38hg38GRCh38
GRCh381204,073,096 - 204,127,743 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371204,042,243 - 204,096,871 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,308,869 - 202,363,494 (+)NCBINCBI36hg18NCBI36
Build 341200,773,902 - 200,828,526NCBI
Celera1177,177,489 - 177,232,113 (+)NCBI
Cytogenetic Map1q32.1NCBI
HuRef1175,207,788 - 175,262,190 (+)NCBIHuRef
CHM1_11205,465,911 - 205,520,530 (+)NCBICHM1_1
Sox13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,310,038 - 133,352,198 (-)NCBIGRCm39mm39
GRCm39 Ensembl1133,310,041 - 133,352,115 (-)Ensembl
GRCm381133,382,300 - 133,424,459 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,382,303 - 133,424,377 (-)EnsemblGRCm38mm10GRCm38
MGSCv371135,278,877 - 135,320,789 (-)NCBIGRCm37mm9NCBIm37
MGSCv361135,209,849 - 135,220,764 (-)NCBImm8
Celera1135,994,724 - 136,036,968 (-)NCBICelera
Cytogenetic Map1E4NCBI
Sox13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21344,831,097 - 44,875,522 (-)NCBI
Rnor_6.0 Ensembl1350,434,702 - 50,479,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01350,434,702 - 50,479,118 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01355,487,460 - 55,531,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41346,298,820 - 46,345,155 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11346,314,242 - 46,328,986 (-)NCBI
Celera1345,163,489 - 45,207,838 (-)NCBICelera
Cytogenetic Map13q13NCBI
SOX13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11183,963,390 - 184,018,111 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,003,907 - 184,016,504 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01179,675,017 - 179,730,628 (+)NCBIMhudiblu_PPA_v0panPan3
SOX13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138702,974 - 721,340 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38523,481 - 720,195 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha38798,529 - 815,690 (+)NCBI
ROS_Cfam_1.038705,300 - 716,303 (+)NCBI
UMICH_Zoey_3.138701,321 - 712,098 (+)NCBI
UNSW_CanFamBas_1.0381,092,743 - 1,103,513 (+)NCBI
UU_Cfam_GSD_1.0381,286,221 - 1,304,778 (+)NCBI
Sox13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934471,396,509 - 71,441,482 (-)NCBI
SpeTri2.0NW_004936567631,126 - 641,967 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl964,731,969 - 64,844,183 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1964,745,762 - 64,780,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,086,586 - 71,142,049 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOX13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12525,220,341 - 25,275,981 (-)NCBI
ChlSab1.1 Ensembl2525,221,945 - 25,235,449 (-)Ensembl
Vero_WHO_p1.0NW_02366605525,980,881 - 26,036,324 (-)NCBI
Sox13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248076,848,218 - 6,887,666 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017940   ⟹   ENSCLAP00000017765
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,966,055 - 39,994,214 (+)Ensembl
RefSeq Acc Id: XM_005375280   ⟹   XP_005375337
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,966,055 - 39,994,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005375281   ⟹   XP_005375338
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,966,054 - 39,994,214 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013522670   ⟹   XP_013378124
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,959,458 - 39,992,863 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375337 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375338 (Get FASTA)   NCBI Sequence Viewer  
  XP_013378124 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005375338   ⟸   XM_005375281
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005375337   ⟸   XM_005375280
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013378124   ⟸   XM_013522670
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCLAP00000017765   ⟸   ENSCLAT00000017940


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012187 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000017765 ENTREZGENE
Ensembl Transcript ENSCLAT00000017940 ENTREZGENE
NCBI Gene Sox13 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-06-18 Sox13  SRY-box transcription factor 13  Sox13  SRY-box 13  Symbol and/or name change 5135510 APPROVED
2016-08-16 Sox13  SRY-box 13    SRY (sex determining region Y)-box 13  Symbol and/or name change 5135510 APPROVED