Syn3 (synapsin III) - Rat Genome Database

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Gene: Syn3 (synapsin III) Chinchilla lanigera
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Symbol: Syn3
Name: synapsin III
RGD ID: 9017428
Description: ENCODES a protein that exhibits ATP binding (ortholog); INVOLVED IN synaptic vesicle clustering (ortholog); synaptic vesicle cycle (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); fundus dystrophy (ortholog); Pseudoinflammatory Fundus Dystrophy, Finnish Type (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: synapsin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,455,465 - 41,762,920 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540541,450,081 - 41,762,894 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Syn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540541,455,465 - 41,762,920 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540541,450,081 - 41,762,894 (-)NCBIChiLan1.0ChiLan1.0
SYN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2232,512,552 - 33,058,372 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl2232,507,820 - 33,058,381 (-)EnsemblGRCh38hg38GRCh38
GRCh382232,507,820 - 33,058,381 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372232,903,807 - 33,454,367 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,238,540 - 31,732,683 (-)NCBINCBI36hg18NCBI36
Build 342231,233,093 - 31,727,237NCBI
Celera2216,710,711 - 17,256,522 (-)NCBI
Cytogenetic Map22q12.3NCBI
HuRef2215,865,721 - 16,411,951 (-)NCBIHuRef
CHM1_12232,867,892 - 33,413,788 (-)NCBICHM1_1
Syn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391085,884,610 - 86,336,730 (-)NCBIGRCm39mm39
GRCm39 Ensembl1085,890,989 - 86,334,760 (-)Ensembl
GRCm381086,048,746 - 86,498,926 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1086,055,125 - 86,498,896 (-)EnsemblGRCm38mm10GRCm38
MGSCv371085,511,491 - 85,961,641 (-)NCBIGRCm37mm9NCBIm37
MGSCv361085,485,308 - 85,928,638 (-)NCBImm8
Celera1088,022,524 - 88,480,347 (-)NCBICelera
Cytogenetic Map10C1NCBI
Syn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2716,216,055 - 17,808,790 (+)NCBI
Rnor_6.0 Ensembl723,403,891 - 23,808,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0723,403,896 - 23,808,602 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0723,553,831 - 23,958,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4719,544,439 - 19,940,847 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1719,552,680 - 19,953,765 (+)NCBI
Celera714,630,545 - 15,035,838 (+)NCBICelera
Cytogenetic Map7q13NCBI
SYN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12231,373,466 - 31,920,997 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2231,373,604 - 31,866,798 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02213,517,932 - 14,069,661 (-)NCBIMhudiblu_PPA_v0panPan3
SYN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11030,475,134 - 30,927,758 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1030,482,870 - 30,923,257 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1030,458,198 - 30,910,923 (+)NCBI
ROS_Cfam_1.01031,316,595 - 31,770,135 (+)NCBI
UMICH_Zoey_3.11031,058,009 - 31,509,813 (+)NCBI
UNSW_CanFamBas_1.01031,347,117 - 31,799,406 (+)NCBI
UU_Cfam_GSD_1.01031,531,822 - 31,985,721 (+)NCBI
Syn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494513,825,984 - 14,243,677 (+)NCBI
SpeTri2.0NW_0049364926,836,441 - 7,253,867 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl512,017,784 - 12,578,953 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1512,017,741 - 12,501,995 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2512,196,607 - 12,291,334 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYN3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11915,330,179 - 15,821,965 (-)NCBI
Vero_WHO_p1.0NW_023666045110,129,396 - 110,678,492 (+)NCBI
Syn3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247501,663,309 - 1,976,738 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000019836   ⟹   ENSCLAP00000019643
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540541,455,465 - 41,762,920 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000019837   ⟹   ENSCLAP00000019644
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540541,455,465 - 41,758,294 (-)Ensembl
RefSeq Acc Id: XM_005374650   ⟹   XP_005374707
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540541,450,081 - 41,762,894 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374651   ⟹   XP_005374708
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540541,615,404 - 41,758,051 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519163   ⟹   XP_013374617
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540541,450,081 - 41,758,051 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374707 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374708 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374617 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374707   ⟸   XM_005374650
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005374708   ⟸   XM_005374651
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013374617   ⟸   XM_013519163
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000019644   ⟸   ENSCLAT00000019837
RefSeq Acc Id: ENSCLAP00000019643   ⟸   ENSCLAT00000019836


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013480 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000019643 ENTREZGENE
  ENSCLAP00000019644 ENTREZGENE
Ensembl Transcript ENSCLAT00000019836 ENTREZGENE
  ENSCLAT00000019837 ENTREZGENE
NCBI Gene Syn3 ENTREZGENE