Kirrel2 (kirre like nephrin family adhesion molecule 2) - Rat Genome Database

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Gene: Kirrel2 (kirre like nephrin family adhesion molecule 2) Chinchilla lanigera
Analyze
Symbol: Kirrel2
Name: kirre like nephrin family adhesion molecule 2
RGD ID: 9016780
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); negative regulation of protein phosphorylation (ortholog); ASSOCIATED WITH Brugada syndrome 5 (ortholog); epilepsy (ortholog); familial nephrotic syndrome (ortholog); FOUND IN cell-cell junction (ortholog); plasma membrane (ortholog); slit diaphragm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kin of IRRE like 2; kin of IRRE like 2 (Drosophila); kin of IRRE-like protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,705,554 - 2,712,711 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,705,131 - 2,712,921 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Kirrel2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,705,554 - 2,712,711 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,705,131 - 2,712,921 (-)NCBIChiLan1.0ChiLan1.0
KIRREL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381935,851,399 - 35,867,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1935,855,861 - 35,867,136 (+)EnsemblGRCh38hg38GRCh38
GRCh371936,347,813 - 36,358,038 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,039,650 - 41,049,888 (+)NCBINCBI36Build 36hg18NCBI36
Celera1933,061,989 - 33,072,232 (+)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1932,853,122 - 32,863,368 (+)NCBIHuRef
CHM1_11936,349,090 - 36,359,330 (+)NCBICHM1_1
T2T-CHM13v2.01938,397,153 - 38,412,890 (+)NCBIT2T-CHM13v2.0
Kirrel2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,146,955 - 30,160,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl730,146,959 - 30,157,115 (-)EnsemblGRCm39 Ensembl
GRCm38730,447,766 - 30,457,515 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,447,534 - 30,457,690 (-)EnsemblGRCm38mm10GRCm38
MGSCv37731,232,785 - 31,242,534 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36730,156,526 - 30,166,275 (-)NCBIMGSCv36mm8
Celera725,039,403 - 25,049,334 (-)NCBICelera
Cytogenetic Map7B1NCBI
cM Map718.36NCBI
Kirrel2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8194,836,243 - 94,846,119 (-)NCBIGRCr8
mRatBN7.2185,708,793 - 85,718,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl185,708,793 - 85,718,670 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx191,125,338 - 91,135,543 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,591,829 - 99,601,698 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,883,606 - 92,893,811 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0188,909,829 - 88,921,154 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl188,910,415 - 88,920,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,065,806 - 90,075,682 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,403,065 - 85,411,680 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1185,480,807 - 85,490,461 (-)NCBI
Celera180,080,920 - 80,090,796 (-)NCBICelera
Cytogenetic Map1q21NCBI
KIRREL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22041,855,787 - 41,865,964 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11943,840,558 - 43,850,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01932,769,592 - 32,785,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11941,518,306 - 41,533,467 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,518,306 - 41,533,467 (+)Ensemblpanpan1.1panPan2
KIRREL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11116,784,756 - 116,792,138 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1116,784,745 - 116,792,709 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1116,189,731 - 116,197,695 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01117,387,349 - 117,395,299 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1117,387,312 - 117,395,263 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11116,950,895 - 116,958,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01116,574,404 - 116,582,352 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01117,630,212 - 117,638,156 (-)NCBIUU_Cfam_GSD_1.0
Kirrel2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934911,152,532 - 11,160,488 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936570486,249 - 493,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936570485,202 - 493,350 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIRREL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,275,716 - 45,284,444 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,275,737 - 45,284,096 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,658,835 - 40,667,202 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KIRREL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1630,765,005 - 30,778,988 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660738,559,489 - 8,571,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kirrel2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479410,139,423 - 10,148,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479410,138,586 - 10,148,506 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018237   ⟹   ENSCLAP00000018059
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554682,705,554 - 2,712,711 (-)Ensembl
RefSeq Acc Id: XM_013522336   ⟹   XP_013377790
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554682,705,131 - 2,712,921 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013377790 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000018059
  ENSCLAP00000018059.1
Reference Protein Sequences
RefSeq Acc Id: XP_013377790   ⟸   XM_013522336
- UniProtKB: A0A8C2VQC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018059   ⟸   ENSCLAT00000018237
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012389 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018237 ENTREZGENE
  ENSCLAT00000018237.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD80_C2-set UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
NCBI Gene Kirrel2 ENTREZGENE
PANTHER KIN OF IRRE-LIKE PROTEIN 2 UniProtKB/TrEMBL
  NEPHRIN UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2VQC1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-13 Kirrel2  kirre like nephrin family adhesion molecule 2    kin of IRRE like 2 (Drosophila)  Symbol and/or name change 5135510 APPROVED