Bbs12 (Bardet-Biedl syndrome 12) - Rat Genome Database

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Gene: Bbs12 (Bardet-Biedl syndrome 12) Chinchilla lanigera
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Symbol: Bbs12
Name: Bardet-Biedl syndrome 12
RGD ID: 9016582
Description: INVOLVED IN chaperone-mediated protein complex assembly (ortholog); eating behavior (ortholog); intraciliary transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 12 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542817,958,750 - 17,960,873 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542817,957,672 - 17,966,638 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References


Genomics

Comparative Map Data
Bbs12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542817,958,750 - 17,960,873 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542817,957,672 - 17,966,638 (-)NCBIChiLan1.0ChiLan1.0
BBS12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4122,732,702 - 122,744,942 (+)EnsemblGRCh38hg38GRCh38
GRCh384122,700,437 - 122,744,943 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh374123,653,859 - 123,666,094 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364123,873,307 - 123,885,548 (+)NCBINCBI36hg18NCBI36
Celera4121,036,879 - 121,049,116 (+)NCBI
Cytogenetic Map4q27NCBI
HuRef4119,380,599 - 119,392,841 (+)NCBIHuRef
CHM1_14123,630,328 - 123,642,572 (+)NCBICHM1_1
Bbs12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39337,366,695 - 37,383,334 (+)NCBIGRCm39mm39
GRCm39 Ensembl337,366,703 - 37,375,602 (+)Ensembl
GRCm38337,312,547 - 37,321,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl337,312,554 - 37,321,453 (+)EnsemblGRCm38mm10GRCm38
MGSCv37337,211,476 - 37,220,372 (+)NCBIGRCm37mm9NCBIm37
MGSCv36337,511,357 - 37,512,999 (+)NCBImm8
Celera337,199,189 - 37,201,589 (+)NCBICelera
Cytogenetic Map3BNCBI
Bbs12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22120,203,396 - 120,221,024 (+)NCBI
Rnor_6.0 Ensembl2124,054,282 - 124,056,795 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02124,048,513 - 124,057,026 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02143,656,706 - 143,674,099 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42123,866,711 - 123,868,846 (+)NCBIRGSC3.4rn4RGSC3.4
Celera2115,156,465 - 115,159,003 (+)NCBICelera
Cytogenetic Map2q25NCBI
BBS12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14126,058,682 - 126,070,948 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4126,067,897 - 126,070,029 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04114,914,052 - 114,926,300 (+)NCBIMhudiblu_PPA_v0panPan3
BBS12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11917,537,840 - 17,550,443 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1917,538,346 - 17,540,487 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1917,752,570 - 17,768,637 (-)NCBI
ROS_Cfam_1.01917,656,306 - 17,668,715 (-)NCBI
UMICH_Zoey_3.11917,605,326 - 17,621,398 (-)NCBI
UNSW_CanFamBas_1.01917,889,177 - 17,901,599 (-)NCBI
UU_Cfam_GSD_1.01918,355,826 - 18,371,915 (-)NCBI
Bbs12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530165,287,443 - 65,297,059 (-)NCBI
SpeTri2.0NW_0049366621,822,727 - 1,832,403 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BBS12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8101,420,649 - 101,430,015 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18101,354,891 - 101,435,417 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BBS12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1769,987,949 - 70,003,933 (+)NCBI
ChlSab1.1 Ensembl770,000,875 - 70,003,007 (+)Ensembl
Vero_WHO_p1.0NW_02366603748,957,967 - 48,974,067 (+)NCBI
Bbs12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247773,168,791 - 3,179,650 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025879   ⟹   ENSCLAP00000025600
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542817,958,750 - 17,960,873 (-)Ensembl
RefSeq Acc Id: XM_005386764   ⟹   XP_005386821
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542817,957,672 - 17,966,638 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386765   ⟹   XP_005386822
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542817,957,672 - 17,966,119 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386766   ⟹   XP_005386823
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542817,957,672 - 17,966,213 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386767   ⟹   XP_005386824
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542817,957,672 - 17,966,116 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005386768   ⟹   XP_005386825
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542817,957,672 - 17,966,638 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005386825   ⟸   XM_005386768
- Sequence:
RefSeq Acc Id: XP_005386821   ⟸   XM_005386764
- Sequence:
RefSeq Acc Id: XP_005386823   ⟸   XM_005386766
- Sequence:
RefSeq Acc Id: XP_005386824   ⟸   XM_005386767
- Sequence:
RefSeq Acc Id: XP_005386822   ⟸   XM_005386765
- Sequence:
RefSeq Acc Id: ENSCLAP00000025600   ⟸   ENSCLAT00000025879


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017705 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000025600 ENTREZGENE
Ensembl Transcript ENSCLAT00000025879 ENTREZGENE
NCBI Gene Bbs12 ENTREZGENE