Cd96 (CD96 molecule) - Rat Genome Database

Name: Cd96
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cd96 (CD96 molecule) Chinchilla lanigera

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Symbol:

Cd96

Name:

CD96 molecule

RGD ID:

9016192

Description:

INVOLVED IN cell-matrix adhesion (ortholog); negative regulation of natural killer cell cytokine production (ortholog); negative regulation of type II interferon production (ortholog); ASSOCIATED WITH C syndrome (ortholog); multiple sclerosis (ortholog); FOUND IN cytoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

T-cell surface protein tactile

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CD96 (CD96 molecule)	NCBI	Ortholog
Mus musculus (house mouse):	Cd96 (CD96 antigen)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cd96 (CD96 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CD96 (CD96 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CD96 (CD96 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cd96 (CD96 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CD96 (CD96 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CD96 (CD96 molecule)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	11,971,021 - 12,059,171 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	11,971,051 - 12,057,185 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

C syndrome (ISO)

multiple sclerosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-matrix adhesion (ISO)

negative regulation of natural killer cell cytokine production (ISO)

negative regulation of type II interferon production (ISO)

response to lipopolysaccharide (ISO)

Cellular Component

cytoplasm (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Cd96
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955427	11,971,021 - 12,059,171 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955427	11,971,051 - 12,057,185 (+)	NCBI	ChiLan1.0	ChiLan1.0

CD96
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	111,542,197 - 111,665,996 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	111,292,719 - 111,665,996 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	111,261,044 - 111,384,843 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	112,743,616 - 112,853,896 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	112,743,545 - 112,853,906	NCBI
Celera	3	109,660,587 - 109,770,891 (+)	NCBI		Celera
Cytogenetic Map	3	q13.13-q13.2	NCBI
HuRef	3	108,635,962 - 108,746,199 (+)	NCBI		HuRef
CHM1_1	3	111,225,192 - 111,335,543 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	114,263,009 - 114,386,816 (+)	NCBI		T2T-CHM13v2.0

Cd96
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	45,856,015 - 45,940,611 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	45,856,020 - 45,940,614 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	46,035,652 - 46,120,248 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	46,035,657 - 46,120,251 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	46,035,770 - 46,120,361 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	45,954,989 - 46,039,446 (-)	NCBI		MGSCv36	mm8
Celera	16	46,412,471 - 46,501,450 (-)	NCBI		Celera
Cytogenetic Map	16	B5	NCBI
cM Map	16	30.45	NCBI

Cd96
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	68,164,926 - 68,239,266 (+)	NCBI		GRCr8
mRatBN7.2	11	54,702,290 - 54,776,618 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	54,702,290 - 54,776,621 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	63,465,004 - 63,546,439 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	56,126,844 - 56,208,283 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	55,241,194 - 55,322,041 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	57,108,757 - 57,183,855 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	57,108,956 - 57,183,270 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	60,273,387 - 60,347,696 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	56,183,593 - 56,258,568 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	11	54,231,989 - 54,305,717 (+)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI

CD96
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	109,544,305 - 109,651,004 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	109,549,085 - 109,655,784 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	108,694,670 - 108,798,114 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	115,619,322 - 115,720,858 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	115,619,374 - 115,720,858 (+)	Ensembl	panpan1.1		panPan2

CD96
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	16,231,244 - 16,327,670 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	33	16,231,994 - 16,325,572 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	16,333,066 - 16,427,734 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	16,279,316 - 16,562,843 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	33	16,470,540 - 16,563,394 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	33	16,278,454 - 16,373,916 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	16,324,781 - 16,421,426 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	16,870,215 - 16,964,480 (+)	NCBI		UU_Cfam_GSD_1.0

Cd96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	138,061,834 - 138,151,507 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936834	434,877 - 522,411 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936834	432,538 - 522,118 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CD96
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	148,090,630 - 148,192,232 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	148,103,424 - 148,192,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	158,860,932 - 158,952,300 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD96
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	69,141,470 - 69,245,962 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	69,140,288 - 69,244,097 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	97,235,943 - 97,339,499 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005386365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005386367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013515037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_261254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01027198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01027199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01027200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01027201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01278939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000015979 ⟹ ENSCLAP00000015815

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955427	11,971,021 - 12,059,171 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000015980 ⟹ ENSCLAP00000015816

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955427	11,971,021 - 12,059,171 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000015981 ⟹ ENSCLAP00000015817

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955427	11,971,021 - 12,053,310 (+)	Ensembl

RefSeq Acc Id:

XM_005386365 ⟹ XP_005386422

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955427	11,971,051 - 12,057,185 (+)	NCBI

Sequence:

show sequence

CTTTCATGCTCATTACGGAAATGGTCGTGTAAGCTCCTCAGGCAGCGATGGAGAAGAAATGGAC
ATTTTGTGCTGTCTGCTCCATCATCCAGATACAGTTTGTCAGGGGAATATGGGAAGACATAACC
AGTGAAAGAGAAAACATTTACGCTCTACCTGGCTCTGATGTCAACCTGACATGCCAGCTAGAGG
AGAAAAGCTTTTTGGTGCAGATGCAATGGTCCAAAGTCACTAACAAGACGAACCTGATTGCCGT
TTATCACCCACAACACGGCTTCCACTGTGCCAGTGGGAGTCCCTGCGAGTCCCTGGTGACTTTC
CTACAAACTCCTCGGAATGTGACAAAGTGGACTCTGCACTTGAGGAATATCTCTTCATCGCTCA
GCGGAAAATACAAGTGTAGCTTCACTCTGTATCCAGATGGCATTCGTACTAGAACCTACAACCT
TCTCGTTCAGGCACCCGTTCCACAGGATGAATGGAGGAAAAACCGTACAATAGAAATAGAGATA
AATCAGACTTTGGAAATACCATGCTTTCAAAATATCTCCTCAGAAATTTTGTCTGAGTCCACCT
TTGCATGGCTGGTGGAGGATAATGACACTCTGGCAACTGTTATCACCCGGGATCATCACATCAG
CAACTCCACATCATTTACAGACAGAGTCAAGCTAGGTGCAGACTATAGACTTCACCTCTCTCTG
GTCCAAATCCATGATGATGACCGGAAGTTTTCTTGCCACGTTGGAGTCAAGCCTGGCACAATCC
TGAAGAGCTCCACCACCGTGAAGGTCTTTGCTAAGCCAGAAATCCCTATGGTTATGGAAAACAA
AACTGTGGATGTCTTGGGAAAGAGTATATTTACCTGCTCACTAAACAAGGTATTTCCCAAAGCA
AATATTTCATGGATTATTGATGGCCAGTTTCTTCAAGGTGACAAAGAAGAGTTACATATTACTA
ATGAAGAGAGGAAAGACAAAAATGGATTTCTGGAACTGAAGTCTGTTTTAAAAAAGAGCCATAG
TAATAAACCAGCCCAATCAAACAACCTCACAATTTGGTGTATAGCTTTGTTTCCAGTCCCTGGA
AATAAAGTGTGGAATACCTCATCGGAAAAGATCACTTTTTCCTTGGGCTCCGTAAATATCCCAA
CGGATTCTCCATTCAGTGTTACAGAATCTACCCTGGGGACCCAACCTTCTCCCACCAACAGCGC
ACCTCTTACAATAGGATATCCAGCTATGTCTTCAATGGTCCTCATAGATGTGAACACATCAAAG
CCACACAGCGTGCCTCAGACCAGCAGTTCCGGCGTGACTCACCAAGTCTCCAGTGACTCCTGGA
CCTCCAGGGACTCCTGGACCTCCACTGGGACAGATGCCAAAAAATATGATGCCTTCACCGGCAC
AATGGGAGGCTTTTCAAAAATCCTCACAACTGCTAATAGACTGACTGCAAATCAGACCCTCCAT
GCCACTGACATTGTAGTTAATAAGCCCGAAGATGGAATGTCATGGCCGGTCATTGTAGCAGCTC
TGCTCTCCTCCTGTGTGCTACTGTTTGGTCTTGGACTGAGAAAATGGTGTCAGTATCAAAGAGA
AATCATGGAAAGACCCCCACCTTTCAAGCCACCGCCACCTCCCATCATGTATACATGCATTCAA
GAGCCCTTGGGAAGTGATTTGCCTTGTCACGAGATGGAGACACTGTAGTCCTTGGAGATTTCGC
CATAGAGCAGAACTCTGCTGGAATCCTAGTGGAAAGGTAGACATTGTGCTCGGTAATATAACCA
CCCTCCAGCCAAGCCTGTGCTGCAGCTGAGATTGATATCAGAAATGAATGACTTGTTCTCCAAG
CAACGCTGTTTTTCATGTGTATATGCCTGAAATTTAAATAAGAGTAAAAGGATATAGCAATGCT
T

hide sequence

RefSeq Acc Id:

XM_005386367 ⟹ XP_005386424

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955427	11,971,051 - 12,057,185 (+)	NCBI

Sequence:

show sequence

CTTTCATGCTCATTACGGAAATGGTCGTGTAAGCTCCTCAGGCAGCGATGGAGAAGAAATGGAC
ATTTTGTGCTGTCTGCTCCATCATCCAGATACAGTTTGTCAGGGGAATATGGGAAGACATAACC
AGTGAAAGAGAAAACATTTACGCTCTACCTGGCTCTGATGTCAACCTGACATGCCAGCTAGAGG
AGAAAAGCTTTTTGGTGCAGATGCAATGGTCCAAAGTCACTAACAAGACGAACCTGATTGCCGT
TTATCACCCACAACACGGCTTCCACTGTGCCAGTGGGAGTCCCTGCGAGTCCCTGGTGACTTTC
CTACAAACTCCTCGGAATGTGACAAAGTGGACTCTGCACTTGAGGAATATCTCTTCATCGCTCA
GCGGAAAATACAAGTGTAGCTTCACTCTGTATCCAGATGGCATTCGTACTAGAACCTACAACCT
TCTCGTTCAGGCACCCGTTCCACAGGATGAATGGAGGAAAAACCGTACAATAGAAATAGAGATA
AATCAGACTTTGGAAATACCATGCTTTCAAAATATCTCCTCAGAAATTTTGTCTGAGTCCACCT
TTGCATGGCTGGTGGAGGATAATGACACTCTGGCAACTGTTATCACCCGGGATCATCACATCAG
CAACTCCACATCATTTACAGACAGAGTCAAGCTAGGTGCAGACTATAGACTTCACCTCTCTCTG
GTCCAAATCCATGATGATGACCGGAAGTTTTCTTGCCACGTTGGAGTCAAGCCTGGCACAATCC
TGAAGAGCTCCACCACCGTGAAGGTCTTTGCTAAGCCAGAAATCCCTATGGTTATGGAAAACAA
AACTGTGGATGTCTTGGGAAAGAGTATATTTACCTGCTCACTAAACAAGGTATTTCCCAAAGCA
AATATTTCATGGATTATTGATGGCCAGTTTCTTCAAGGTGACAAAGAAGAGTTACATATTACTA
ATGAAGAGAGGAAAGACAAAAATGGATTTCTGGAACTGAAGTCTGTTTTAAAAAAGAGCCATAG
TAATAAACCAGCCCAATCAAACAACCTCACAATTTGGTGTATAGCTTTGTTTCCAGTCCCTGGA
AATAAAGTGTGGAATACCTCATCGGAAAAGATCACTTTTTCCTTGGGCTCCGTAAATATCCCAA
CGGATTCTCCATTCAGTGTTACAGAATCTACCCTGGGGACCCAACCTTCTCCCACCAACAGCGC
ACCTCTTACAACCAGCAGTTCCGGCGTGACTCACCAAGTCTCCAGTGACTCCTGGACCTCCAGG
GACTCCTGGACCTCCACTGGGACAGATGCCAAAAAATATGATGCCTTCACCGGCACAATGGGAG
GCTTTTCAAAAATCCTCACAACTGCTAATAGACTGACTGCAAATCAGACCCTCCATGCCACTGA
CATTGTAGTTAATAAGCCCGAAGATGGAATGTCATGGCCGGTCATTGTAGCAGCTCTGCTCTCC
TCCTGTGTGCTACTGTTTGGTCTTGGACTGAGAAAATGGTGTCAGTATCAAAGAGAAATCATGG
AAAGACCCCCACCTTTCAAGCCACCGCCACCTCCCATCATGTATACATGCATTCAAGAGCCCTT
GGGAAGTGATTTGCCTTGTCACGAGATGGAGACACTGTAGTCCTTGGAGATTTCGCCATAGAGC
AGAACTCTGCTGGAATCCTAGTGGAAAGGTAGACATTGTGCTCGGTAATATAACCACCCTCCAG
CCAAGCCTGTGCTGCAGCTGAGATTGATATCAGAAATGAATGACTTGTTCTCCAAGCAACGCTG
TTTTTCATGTGTATATGCCTGAAATTTAAATAAGAGTAAAAGGATATAGCAATGCTT

hide sequence

RefSeq Acc Id:

XM_013515037 ⟹ XP_013370491

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955427	11,971,051 - 12,057,185 (+)	NCBI

Sequence:

show sequence

CTTTCATGCTCATTACGGAAATGGTCGTGTAAGCTCCTCAGGCAGCGATGGAGAAGAAATGGAC
ATTTTGTGCTGTCTGCTCCATCATCCAGATACAGTTTGTCAGGGGAATATGGGAAGACATAACC
AGTGAAAGAGAAAACATTTACGCTCTACCTGGCTCTGATGTCAACCTGACATGCCAGCTAGAGG
AGAAAAGCTTTTTGGTGCAGATGCAATGGTCCAAAGTCACTAACAAGACGAACCTGATTGCCGT
TTATCACCCACAACACGGCTTCCACTGTGCCAGTGGGAGTCCCTGCGAGTCCCTGGTGACTTTC
CTACAAACTCCTCGGAATGTGACAAAGTGGACTCTGCACTTGAGGAATATCTCTTCATCGCTCA
GCGGAAAATACAAGTGTAGCTTCACTCTGTATCCAGATGGCATTCGTACTAGAACCTACAACCT
TCTCGTTCAGGCACCCGTTCCACAGGATGAATGGAGGAAAAACCGTACAATAGAAATAGAGATA
AATCAGACTTTGGAAATACCATGCTTTCAAAATATCTCCTCAGAAATTTTGTCTGAGTCCACCT
TTGCATGGCTGGTGGAGGATAATGACACTCTGGCAACTGTTATCACCCGGGATCATCACATCAG
CAACTCCACATCATTTACAGACAGAGTCAAGCTAGGTGCAGACTATAGACTTCACCTCTCTCTG
GTCCAAATCCATGATGATGACCGGAAGTTTTCTTGCCACGTTGGAGTCAAGCCTGGCACAATCC
TGAAGAGCTCCACCACCGTGAAGGTCTTTGCTAAGCCAGAAATCCCTATGGTTATGGAAAACAA
AACTGTGGATGTCTTGGGAAAGAGTATATTTACCTGCTCACTAAACAAGGTATTTCCCAAAGCA
AATATTTCATGGATTATTGATGGCCAGTTTCTTCAAGGTGACAAAGAAGAGTTACATATTACTA
ATGAAGAGAGGAAAGACAAAAATGGATTTCTGGAACTGAAGTCTGTTTTAAAAAAGAGCCATAG
TAATAAACCAGCCCAATCAAACAACCTCACAATTTGGTGTATAGCTTTGTTTCCAGTCCCTGGA
AATAAAGTGTGGAATACCTCATCGGAAAAGATCACTTTTTCCTTGGGCTCCGTAAATATCCCAA
CGGATTCTCCATTCAGTGTTACAGAATCTACCCTGGGGACCCAACCTTCTCCCACCAACAGCGC
ACCTCTTACAAGATATCCAGCTATGTCTTCAATGGTCCTCATAGATGTGAACACATCAAAGCCA
CACAGCGTGCCTCAGACCAGCAGTTCCGGCGTGACTCACCAAGTCTCCAGTGACTCCTGGACCT
CCAGGGACTCCTGGACCTCCACTGGGACAGATGCCAAAAAATATGATGCCTTCACCGGCACAAT
GGGAGGCTTTTCAAAAATCCTCACAACTGCTAATAGACTGACTGCAAATCAGACCCTCCATGCC
ACTGACATTGTAGTTAATAAGCCCGAAGATGGAATGTCATGGCCGGTCATTGTAGCAGCTCTGC
TCTCCTCCTGTGTGCTACTGTTTGGTCTTGGACTGAGAAAATGGTGTCAGTATCAAAGAGAAAT
CATGGAAAGACCCCCACCTTTCAAGCCACCGCCACCTCCCATCATGTATACATGCATTCAAGAG
CCCTTGGGAAGTGATTTGCCTTGTCACGAGATGGAGACACTGTAGTCCTTGGAGATTTCGCCAT
AGAGCAGAACTCTGCTGGAATCCTAGTGGAAAGGTAGACATTGTGCTCGGTAATATAACCACCC
TCCAGCCAAGCCTGTGCTGCAGCTGAGATTGATATCAGAAATGAATGACTTGTTCTCCAAGCAA
CGCTGTTTTTCATGTGTATATGCCTGAAATTTAAATAAGAGTAAAAGGATATAGCAATGCTT

hide sequence

RefSeq Acc Id:

XR_261254

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955427	11,971,051 - 12,054,779 (+)	NCBI

Sequence:

show sequence

CTTTCATGCTCATTACGGAAATGGTCGTGTAAGCTCCTCAGGCAGCGATGGAGAAGAAATGGAC
ATTTTGTGCTGTCTGCTCCATCATCCAGATACAGTTTGTCAGGGGAATATGGGAAGACATAACC
AGTGAAAGAGAAAACATTTACGCTCTACCTGGCTCTGATGTCAACCTGACATGCCAGCTAGAGG
AGAAAAGCTTTTTGGTGCAGATGCAATGGTCCAAAGTCACTAACAAGACGAACCTGATTGCCGT
TTATCACCCACAACACGGCTTCCACTGTGCCAGTGGGAGTCCCTGCGAGTCCCTGGTGACTTTC
CTACAAACTCCTCGGAATGTGACAAAGTGGACTCTGCACTTGAGGAATATCTCTTCATCGCTCA
GCGGAAAATACAAGTGTAGCTTCACTCTGTATCCAGATGGCATTCGTACTAGAACCTACAACCT
TCTCGTTCAGGCACCCGTTCCACAGGATGAATGGAGGAAAAACCGTACAATAGAAATAGAGATA
AATCAGACTTTGGAAATACCATGCTTTCAAAATATCTCCTCAGAAATTTTGTCTGAGTCCACCT
TTGCATGGCTGGTGGAGGATAATGACACTCTGGCAACTGTTATCACCCGGGATCATCACATCAG
CAACTCCACATCATTTACAGACAGAGTCAAGCTAGGTGCAGACTATAGACTTCACCTCTCTCTG
GTCCAAATCCATGATGATGACCGGAAGTTTTCTTGCCACGTTGGAGTCAAGCCTGGCACAATCC
TGAAGAGCTCCACCACCGTGAAGGTCTTTGCTAAGCCAGAAATCCCTATGGTTATGGAAAACAA
AACTGTGGATGTCTTGGGAAAGAGTATATTTACCTGCTCACTAAACAAGGTATTTCCCAAAGCA
AATATTTCATGGATTATTGATGGCCAGTTTCTTCAAGGTGACAAAGAAGAGTTACATATTACTA
ATGAAGAGAGGAAAGACAAAAATGGATTTCTGGAACTGAAGTCTGTTTTAAAAAAGAGCCATAG
TAATAAACCAGCCCAATCAAACAACCTCACAATTTGGTGTATAGCTTTGTTTCCAGTCCCTGGA
AATAAAGTGTGGAATACCTCATCGGAAAAGATCACTTTTTCCTTGGGCTCCGTAAATATCCCAA
CGGATTCTCCATTCAGTGTTACAGAATCTACCCTGGGGACCCAACCTTCTCCCACCAACAGCGC
ACCTCTTACAATAGGATATCCAGCTATGTCTTCAATGGTCCTCATAGATGTGAACACATCAAAG
CCACACAGCGTGCCTCAGACCAGCAGTTCCGGCGTGACTCACCAAGTCTCCAGTGACTCCTGGA
CCTCCAGGGACTCCTGGACCTCCACTGGGACAGATGCCAAAAAATATGATGCCTTCACCGGCAC
AATGGGAGGCTTTTCAAAAATCCTCACAACTGCTAATAGACTGACTGCAAATCAGACCCTCCAT
GCCACTGGACTCTAGTGGTTTGCATGGTGGACTATCTAGAAAATGCACCACAGGATGACATGCT
ATAGACTATATGGGCTTCCAGCGTACCCTCAGTGTCTTCTTTGACAGGGCTGAGACATTGTAGT
TAATAAGCCCGAAGATGGAATGTCATGGCCGGTCATTGTAGCAGCTCTGCTCTCCTCCTGTGTG
CTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005386422	(Get FASTA)	NCBI Sequence Viewer
	XP_005386424	(Get FASTA)	NCBI Sequence Viewer
	XP_013370491	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000015815
	ENSCLAP00000015815.1
	ENSCLAP00000015816
	ENSCLAP00000015816.1
	ENSCLAP00000015817.1

RefSeq Acc Id:	XP_005386422 ⟸ XM_005386365
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VHU5 (UniProtKB/TrEMBL), A0A8C2YQH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKKWTFCAVCSIIQIQFVRGIWEDITSERENIYALPGSDVNLTCQLEEKSFLVQMQWSKVTNK TNLIAVYHPQHGFHCASGSPCESLVTFLQTPRNVTKWTLHLRNISSSLSGKYKCSFTLYPDGIR TRTYNLLVQAPVPQDEWRKNRTIEIEINQTLEIPCFQNISSEILSESTFAWLVEDNDTLATVIT RDHHISNSTSFTDRVKLGADYRLHLSLVQIHDDDRKFSCHVGVKPGTILKSSTTVKVFAKPEIP MVMENKTVDVLGKSIFTCSLNKVFPKANISWIIDGQFLQGDKEELHITNEERKDKNGFLELKSV LKKSHSNKPAQSNNLTIWCIALFPVPGNKVWNTSSEKITFSLGSVNIPTDSPFSVTESTLGTQP SPTNSAPLTIGYPAMSSMVLIDVNTSKPHSVPQTSSSGVTHQVSSDSWTSRDSWTSTGTDAKKY DAFTGTMGGFSKILTTANRLTANQTLHATDIVVNKPEDGMSWPVIVAALLSSCVLLFGLGLRKW CQYQREIMERPPPFKPPPPPIMYTCIQEPLGSDLPCHEMETL hide sequence

RefSeq Acc Id:	XP_005386424 ⟸ XM_005386367
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2VHP0 (UniProtKB/TrEMBL), A0A8C2YQH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKKWTFCAVCSIIQIQFVRGIWEDITSERENIYALPGSDVNLTCQLEEKSFLVQMQWSKVTNK TNLIAVYHPQHGFHCASGSPCESLVTFLQTPRNVTKWTLHLRNISSSLSGKYKCSFTLYPDGIR TRTYNLLVQAPVPQDEWRKNRTIEIEINQTLEIPCFQNISSEILSESTFAWLVEDNDTLATVIT RDHHISNSTSFTDRVKLGADYRLHLSLVQIHDDDRKFSCHVGVKPGTILKSSTTVKVFAKPEIP MVMENKTVDVLGKSIFTCSLNKVFPKANISWIIDGQFLQGDKEELHITNEERKDKNGFLELKSV LKKSHSNKPAQSNNLTIWCIALFPVPGNKVWNTSSEKITFSLGSVNIPTDSPFSVTESTLGTQP SPTNSAPLTTSSSGVTHQVSSDSWTSRDSWTSTGTDAKKYDAFTGTMGGFSKILTTANRLTANQ TLHATDIVVNKPEDGMSWPVIVAALLSSCVLLFGLGLRKWCQYQREIMERPPPFKPPPPPIMYT CIQEPLGSDLPCHEMETL hide sequence

RefSeq Acc Id:	XP_013370491 ⟸ XM_013515037
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2YQH5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKKWTFCAVCSIIQIQFVRGIWEDITSERENIYALPGSDVNLTCQLEEKSFLVQMQWSKVTNK TNLIAVYHPQHGFHCASGSPCESLVTFLQTPRNVTKWTLHLRNISSSLSGKYKCSFTLYPDGIR TRTYNLLVQAPVPQDEWRKNRTIEIEINQTLEIPCFQNISSEILSESTFAWLVEDNDTLATVIT RDHHISNSTSFTDRVKLGADYRLHLSLVQIHDDDRKFSCHVGVKPGTILKSSTTVKVFAKPEIP MVMENKTVDVLGKSIFTCSLNKVFPKANISWIIDGQFLQGDKEELHITNEERKDKNGFLELKSV LKKSHSNKPAQSNNLTIWCIALFPVPGNKVWNTSSEKITFSLGSVNIPTDSPFSVTESTLGTQP SPTNSAPLTRYPAMSSMVLIDVNTSKPHSVPQTSSSGVTHQVSSDSWTSRDSWTSTGTDAKKYD AFTGTMGGFSKILTTANRLTANQTLHATDIVVNKPEDGMSWPVIVAALLSSCVLLFGLGLRKWC QYQREIMERPPPFKPPPPPIMYTCIQEPLGSDLPCHEMETL hide sequence

Ensembl Acc Id:

ENSCLAP00000015815 ⟸ ENSCLAT00000015979

Ensembl Acc Id:

ENSCLAP00000015816 ⟸ ENSCLAT00000015980

Ensembl Acc Id:

ENSCLAP00000015817 ⟸ ENSCLAT00000015981

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010873	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000015979	ENTREZGENE
	ENSCLAT00000015979.1	UniProtKB/TrEMBL
	ENSCLAT00000015980	ENTREZGENE
	ENSCLAT00000015980.1	UniProtKB/TrEMBL
	ENSCLAT00000015981.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD96	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
NCBI Gene	Cd96	ENTREZGENE
PANTHER	PTHR15317	UniProtKB/TrEMBL
	T-CELL SURFACE PROTEIN TACTILE	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8C2VHP0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VHU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YQH5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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