Afg1l (AFG1 like ATPase) - Rat Genome Database

Name: Afg1l
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Afg1l (AFG1 like ATPase) Chinchilla lanigera

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Symbol:

Afg1l

Name:

AFG1 like ATPase

RGD ID:

9016077

Description:

INVOLVED IN mitochondrial electron transport, cytochrome c to oxygen (ortholog); mitochondrial protein catabolic process (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Lace1; lactation elevated 1; lactation elevated protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AFG1L (AFG1 like ATPase)	NCBI	Ortholog
Mus musculus (house mouse):	Afg1l (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Afg1l (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AFG1L (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AFG1L (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Afg1l (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AFG1L (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AFG1L (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Afg1l (AFG1 like ATPase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	33,386,098 - 33,617,721 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	33,386,568 - 33,617,721 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease type 4 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial electron transport, cytochrome c to oxygen (ISO)

mitochondrial protein catabolic process (ISO)

mitochondrion organization (ISO)

Cellular Component

mitochondrial membrane (ISO)

mitochondrion (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Afg1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955411	33,386,098 - 33,617,721 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955411	33,386,568 - 33,617,721 (+)	NCBI	ChiLan1.0	ChiLan1.0

AFG1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	108,295,054 - 108,526,001 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	108,294,991 - 108,526,796 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	108,616,258 - 108,847,204 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	108,722,791 - 108,950,951 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	108,722,790 - 108,950,958	NCBI
Celera	6	109,362,234 - 109,590,401 (+)	NCBI		Celera
Cytogenetic Map	6	q21	NCBI
HuRef	6	106,183,791 - 106,411,846 (+)	NCBI		HuRef
CHM1_1	6	108,879,055 - 109,107,208 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	109,472,456 - 109,703,353 (+)	NCBI		T2T-CHM13v2.0

Afg1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	42,188,577 - 42,354,561 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	42,188,581 - 42,354,561 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	42,312,581 - 42,478,565 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	42,312,585 - 42,478,565 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	42,032,391 - 42,198,371 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	42,001,000 - 42,166,829 (-)	NCBI		MGSCv36	mm8
Celera	10	43,184,771 - 43,345,934 (-)	NCBI		Celera
Cytogenetic Map	10	B2	NCBI
cM Map	10	22.88	NCBI

Afg1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	47,380,582 - 47,550,307 (-)	NCBI		GRCr8
mRatBN7.2	20	45,798,344 - 45,967,997 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	45,798,349 - 45,967,906 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	47,515,806 - 47,685,351 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	47,165,974 - 47,335,507 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	47,861,988 - 48,028,311 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	47,038,824 - 47,208,812 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	20	48,714,679 - 48,877,546 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	46,296,402 - 46,302,522 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	54,003,540 - 54,168,475 (+)	NCBI		Celera
Cytogenetic Map	20	q13	NCBI

AFG1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	128,302,910 - 128,540,479 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	126,189,125 - 126,428,316 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	106,097,263 - 106,326,453 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	109,956,704 - 110,370,685 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	109,956,916 - 110,367,328 (+)	Ensembl	panpan1.1		panPan2

AFG1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	65,312,922 - 65,516,207 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	65,313,140 - 65,515,992 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	65,128,524 - 65,331,934 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	66,188,670 - 66,394,685 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	66,188,865 - 66,394,683 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	65,543,778 - 65,745,622 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	65,390,373 - 65,593,720 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	65,663,309 - 65,865,515 (+)	NCBI		UU_Cfam_GSD_1.0

Afg1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	100,278,885 - 100,479,172 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936564	4,553,732 - 4,757,616 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936564	4,553,758 - 4,755,126 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AFG1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	74,367,617 - 74,591,853 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	74,367,421 - 74,590,766 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	83,635,078 - 83,849,079 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AFG1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	65,341,306 - 65,559,829 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	65,331,879 - 65,531,108 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	37,659,385 - 37,885,317 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Afg1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624780	13,771,341 - 14,038,146 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624780	13,769,419 - 14,031,477 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005377845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005377846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013510900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01012355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012357	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01012373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01055437	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018561 ⟹ ENSCLAP00000018381

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955411	33,386,098 - 33,617,721 (+)	Ensembl

RefSeq Acc Id:

XM_005377845 ⟹ XP_005377902

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955411	33,386,568 - 33,617,721 (+)	NCBI

Sequence:

show sequence

GGCACAGGAGTGTGTCTGCCCGCCCCTTGGGGCTGGAGGTCACCTCCCTTAGCTGCTCCCTAGC
TTCCCTCGGGCGGGCGGAGCGTTCCCCGAGCACGGTTGGGTTTCACTGTGCCACCGTCTCTCAT
CTGGCTTTCAATAAAGTTTCCCCTTCCTCCCCTTGCACGGAGCGCAAGATGGCGGCCTCCCGGT
CGCCCTTGGCCGTCCTGCGCGCCCTGGCGCGGACCCCGCGGAGTGGGGCTCGCGTGGGGTGCGG
GGCCCGGGCCGCCGTCCCGGGGAGGCCCCTCTGGAAAGCCTACACAGTTCAGACACTTGACAGT
GTGACCCGAACTGCTGCTTCTGAGGCCTATTTGAAAGCTTTGGCTGTTTGCCATGGACCTCTGG
ACCACTATGACTTTCTGATCAAAGCTCATGAGCTGAAGGACGATGAACATCAAAGAAGAGTCAT
ACAGTGTTTGCAGAAATTGCATGAGGACCTTGAAAGATACAGTGCAGAGGCGGAAGGCTTTCTT
TCAAAGCTTTTTTCAAGGAGCAAGCCTCCAAGGGGCCTGTATGTTTATGGAGATGTTGGTACAG
GGAAAACAATGGTGATGGATATATTTTATGCTTATGTGGAAATGAAGAGGAAAAAACGGGTCCA
TTTTCATGGCTTTATGCTAGATGTGCATAAAAGAATACATCGCCTTAAACAGAGCTTGCCAAAA
AGGAAACCAGGATTCGTGACCAAATCATATGACCCAATAGCTCCCATAGCTGAAGAAATCAGCC
AAGAAGCATGTCTCCTATGTTTCGATGAATTTCAGGTCACTGACATTGCTGATGCCATGATTCT
GAAACAGCTTTTTGAAAATCTGTTCAAAAACGGGGTCGTCGTTGTGGCAACGTCCAACAGACCA
CCGGAAGACCTCTATAAAAATGGACTCCAAAGGGCTAACTTTGTACCATTCATCGCTGTCCTGA
AGGAATATTGTCATACTGTCCAGCTAGATTCTGGAATAGATTACCGGAAAAGGGAACTCCCTGC
TGCAGGAAAACTCTACTACCTCACAAGTGAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTT
GATGAGCTGGCTCAGAAACAAAATGATTTAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAG
AGCTGCGGCTGAATAAAGCCTGTGGAACCATTGCCGACTGCACATTTGAAGAGCTGTGTGAGAG
ACCACTCGGAGCCAGTGACTATTTGGAACTGTCGAGGAATTTTGATACAGTATTTTTACGGAAC
ATTCCACAATTTACGTTGGCAAAGAGGACCCAAGCTCGAAGATTCATAACTCTCATTGATAATT
TTTATGATTTCAAGGTGCGTATAATTTGCTCTGCCTCAACTCCTATATCAAGCTTATTTTTGCA
TCAACATCATGACAGTGAATTGGAGCAAAGCAGAATACTGATGGATGATTTGGGGCTGAGCCAG
GACGCGGCTCAGGGGCTGTCCATGTTCACCGGGGAAGAGGAGATCTTCGCGTTCCAGCGCACCA
CCTCGCGGCTCACGGAGATGCAGACCGAGCAGTACTGGAACGAAGGGGACAGAAGCCAGAAGTG
ACCGTCCTTTCCCACGAGGACTGTGCACATGGCGACTGCAGGGAGAACTCTGCAGAACTGTGAG
ACTTGAAAGAATCGTTTTCTCATCGTCCGTTACGCACTTTGTCCTCTGGACCATTCTAATCTAA
GATTGCTGTCAAAGATGCAGTGGATTAGTAAGTTAAAGATTTAAAACTTTTATAGATCTGCTTT
TGCCTATTTATTTGGACTTCTTTCTGCACCACAAAATTGAATATTGTAATGATTTGATGATTGA
AAATGATTGTAAAAGCAGACAATGCGCTTTACAGGAAACCCCCTGAGTGAACCTTGAATGTACA
AACACTAAATCCCAGTCCTGATGTCTCCA

hide sequence

RefSeq Acc Id:

XM_005377846 ⟹ XP_005377903

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955411	33,386,568 - 33,617,721 (+)	NCBI

Sequence:

show sequence

GGCACAGGAGTGTGTCTGCCCGCCCCTTGGGGCTGGAGGTCACCTCCCTTAGCTGCTCCCTAGC
TTCCCTCGGGCGGGCGGAGCGTTCCCCGAGCACGGTTGGGTTTCACTGTGCCACCGTCTCTCAT
CTGGCTTTCAATAAAGTTTCCCCTTCCTCCCCTTGCACGGAGCGCAAGATGGCGGCCTCCCGGT
CGCCCTTGGCCGTCCTGCGCGCCCTGGCGCGGACCCCGCGGAGTGGGGCTCGCGTGGGGTGCGG
GGCCCGGGCCGCCGTCCCGGGGAGGCCCCTCTGGAAAGCCTACACAGTTCAGACACTTGACAGT
GTGACCCGAACTGCTGCTTCTGAGGCCTATTTGAAAGCTTTGGCTGTTTGCCATGGACCTCTGG
ACCACTATGACTTTCTGATCAAAGCTCATGAGCTGAAGGACGATGAACATCAAAGAAGAGTCAT
ACAGTGTTTGCAGAAATTGCATGAGGACCTTGAAAGATACAGTGCAGAGGCGGAAGGCTTTCTT
TCAAAGCTTTTTTCAAGGAGCAAGCCTCCAAGGGGCCTGTATGTTTATGGAGATGTTGGTACAG
GGAAAACAATGGTGATGGATATATTTTATGCTTATGTGGAAATGAAGAGGAAAAAACGGGTCCA
TTTTCATGGCTTTATGCTAGATGTGCATAAAAGAATACATCGCCTTAAACAGAGCTTGCCAAAA
AGGAAACCAGGATTCGTGACCAAATCATATGACCCAATAGCTCCCATAGCTGAAGAAATCAGCC
AAGAAGCATGTCTCCTATGTTTCGATGAATTTCAGGTCACTGACATTGCTGATGCCATGATTCT
GAAACAGCTTTTTGAAAATCTGTTCAAAAACGGGGTCGTCGTTGTGGCAACGTCCAACAGACCA
CCGGAAGACCTCTATAAAAATGGACTCCAAAGGGCTAACTTTGTACCATTCATCGCTGTCCTGA
AGGAATATTGTCATACTGTCCAGCTAGATTCTGGAATAGATTACCGGAAAAGGGAACTCCCTGC
TGCAGGAAAACTCTACTACCTCACAAGTGAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTT
GATGAGCTGGCTCAGAAACAAAATGATTTAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAG
AGCTGCGGCTGAATAAAGCCTGTGGAACCATTGCCGACTGCACATTTGAAGAGCTGTGTGAGAG
AGTGCGTATAATTTGCTCTGCCTCAACTCCTATATCAAGCTTATTTTTGCATCAACATCATGAC
AGTGAATTGGAGCAAAGCAGAATACTGATGGATGATTTGGGGCTGAGCCAGGACGCGGCTCAGG
GGCTGTCCATGTTCACCGGGGAAGAGGAGATCTTCGCGTTCCAGCGCACCACCTCGCGGCTCAC
GGAGATGCAGACCGAGCAGTACTGGAACGAAGGGGACAGAAGCCAGAAGTGACCGTCCTTTCCC
ACGAGGACTGTGCACATGGCGACTGCAGGGAGAACTCTGCAGAACTGTGAGACTTGAAAGAATC
GTTTTCTCATCGTCCGTTACGCACTTTGTCCTCTGGACCATTCTAATCTAAGATTGCTGTCAAA
GATGCAGTGGATTAGTAAGTTAAAGATTTAAAACTTTTATAGATCTGCTTTTGCCTATTTATTT
GGACTTCTTTCTGCACCACAAAATTGAATATTGTAATGATTTGATGATTGAAAATGATTGTAAA
AGCAGACAATGCGCTTTACAGGAAACCCCCTGAGTGAACCTTGAATGTACAAACACTAAATCCC
AGTCCTGATGTCTCCA

hide sequence

RefSeq Acc Id:

XM_013510900 ⟹ XP_013366354

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955411	33,397,505 - 33,617,721 (+)	NCBI

Sequence:

show sequence

TGGAAAGTTTGGATTGTGATTTGGATTTCATTCTGTTCTGCTGGATCCAGAATTTGGCATTTCC
GTTTCCTCATCTGTAGAATGGGATTGATTATCCTAACTCTGCCTTACTCGGGAGACCAAATAAC
GAGGTTATTATGTGGGAAAATCTCTTTAAATCCTACACAGTTCAGACACTTGACAGTGTGACCC
GAACTGCTGCTTCTGAGGCCTATTTGAAAGCTTTGGCTGTTTGCCATGGACCTCTGGACCACTA
TGACTTTCTGATCAAAGCTCATGAGCTGAAGGACGATGAACATCAAAGAAGAGTCATACAGTGT
TTGCAGAAATTGCATGAGGACCTTGAAAGATACAGTGCAGAGGCGGAAGGCTTTCTTTCAAAGC
TTTTTTCAAGGAGCAAGCCTCCAAGGGGCCTGTATGTTTATGGAGATGTTGGTACAGGGAAAAC
AATGGTGATGGATATATTTTATGCTTATGTGGAAATGAAGAGGAAAAAACGGGTCCATTTTCAT
GGCTTTATGCTAGATGTGCATAAAAGAATACATCGCCTTAAACAGAGCTTGCCAAAAAGGAAAC
CAGGATTCGTGACCAAATCATATGACCCAATAGCTCCCATAGCTGAAGAAATCAGCCAAGAAGC
ATGTCTCCTATGTTTCGATGAATTTCAGGTCACTGACATTGCTGATGCCATGATTCTGAAACAG
CTTTTTGAAAATCTGTTCAAAAACGGGGTCGTCGTTGTGGCAACGTCCAACAGACCACCGGAAG
ACCTCTATAAAAATGGACTCCAAAGGGCTAACTTTGTACCATTCATCGCTGTCCTGAAGGAATA
TTGTCATACTGTCCAGCTAGATTCTGGAATAGATTACCGGAAAAGGGAACTCCCTGCTGCAGGA
AAACTCTACTACCTCACAAGTGAAGCTGATGTGGAGGCTGTCATGGATAAGTTGTTTGATGAGC
TGGCTCAGAAACAAAATGATTTAACTAGACCAAGGATTCTAAAAGTGCAAGGCAGAGAGCTGCG
GCTGAATAAAGCCTGTGGAACCATTGCCGACTGCACATTTGAAGAGCTGTGTGAGAGACCACTC
GGAGCCAGTGACTATTTGGAACTGTCGAGGAATTTTGATACAGTATTTTTACGGAACATTCCAC
AATTTACGTTGGCAAAGAGGACCCAAGCTCGAAGATTCATAACTCTCATTGATAATTTTTATGA
TTTCAAGGTGCGTATAATTTGCTCTGCCTCAACTCCTATATCAAGCTTATTTTTGCATCAACAT
CATGACAGTGAATTGGAGCAAAGCAGAATACTGATGGATGATTTGGGGCTGAGCCAGGACGCGG
CTCAGGGGCTGTCCATGTTCACCGGGGAAGAGGAGATCTTCGCGTTCCAGCGCACCACCTCGCG
GCTCACGGAGATGCAGACCGAGCAGTACTGGAACGAAGGGGACAGAAGCCAGAAGTGACCGTCC
TTTCCCACGAGGACTGTGCACATGGCGACTGCAGGGAGAACTCTGCAGAACTGTGAGACTTGAA
AGAATCGTTTTCTCATCGTCCGTTACGCACTTTGTCCTCTGGACCATTCTAATCTAAGATTGCT
GTCAAAGATGCAGTGGATTAGTAAGTTAAAGATTTAAAACTTTTATAGATCTGCTTTTGCCTAT
TTATTTGGACTTCTTTCTGCACCACAAAATTGAATATTGTAATGATTTGATGATTGAAAATGAT
TGTAAAAGCAGACAATGCGCTTTACAGGAAACCCCCTGAGTGAACCTTGAATGTACAAACACTA
AATCCCAGTCCTGATGTCTCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005377902	(Get FASTA)	NCBI Sequence Viewer
	XP_005377903	(Get FASTA)	NCBI Sequence Viewer
	XP_013366354	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018381
	ENSCLAP00000018381.1

RefSeq Acc Id:	XP_005377902 ⟸ XM_005377845
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VR18 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASRSPLAVLRALARTPRSGARVGCGARAAVPGRPLWKAYTVQTLDSVTRTAASEAYLKALAV CHGPLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLERYSAEAEGFLSKLFSRSKPPRGLYVY GDVGTGKTMVMDIFYAYVEMKRKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFVTKSYDPIAPI AEEISQEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVP FIAVLKEYCHTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRIL KVQGRELRLNKACGTIADCTFEELCERPLGASDYLELSRNFDTVFLRNIPQFTLAKRTQARRFI TLIDNFYDFKVRIICSASTPISSLFLHQHHDSELEQSRILMDDLGLSQDAAQGLSMFTGEEEIF AFQRTTSRLTEMQTEQYWNEGDRSQK hide sequence

RefSeq Acc Id:

XP_005377903 ⟸ XM_005377846

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAASRSPLAVLRALARTPRSGARVGCGARAAVPGRPLWKAYTVQTLDSVTRTAASEAYLKALAV
CHGPLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLERYSAEAEGFLSKLFSRSKPPRGLYVY
GDVGTGKTMVMDIFYAYVEMKRKKRVHFHGFMLDVHKRIHRLKQSLPKRKPGFVTKSYDPIAPI
AEEISQEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVP
FIAVLKEYCHTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRIL
KVQGRELRLNKACGTIADCTFEELCERVRIICSASTPISSLFLHQHHDSELEQSRILMDDLGLS
QDAAQGLSMFTGEEEIFAFQRTTSRLTEMQTEQYWNEGDRSQK

hide sequence

RefSeq Acc Id:

XP_013366354 ⟸ XM_013510900

- Peptide Label:

isoform X2

- Sequence:

show sequence

MWENLFKSYTVQTLDSVTRTAASEAYLKALAVCHGPLDHYDFLIKAHELKDDEHQRRVIQCLQK
LHEDLERYSAEAEGFLSKLFSRSKPPRGLYVYGDVGTGKTMVMDIFYAYVEMKRKKRVHFHGFM
LDVHKRIHRLKQSLPKRKPGFVTKSYDPIAPIAEEISQEACLLCFDEFQVTDIADAMILKQLFE
NLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCHTVQLDSGIDYRKRELPAAGKLY
YLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTIADCTFEELCERPLGAS
DYLELSRNFDTVFLRNIPQFTLAKRTQARRFITLIDNFYDFKVRIICSASTPISSLFLHQHHDS
ELEQSRILMDDLGLSQDAAQGLSMFTGEEEIFAFQRTTSRLTEMQTEQYWNEGDRSQK

hide sequence

Ensembl Acc Id:

ENSCLAP00000018381 ⟸ ENSCLAT00000018561

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012599	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018561	ENTREZGENE
	ENSCLAT00000018561.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	ATPase_AFG1-like	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	Lace1	ENTREZGENE
PANTHER	AFG1-LIKE ATPASE	UniProtKB/TrEMBL
	PTHR12169	UniProtKB/TrEMBL
Pfam	AFG1_ATPase	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C2VR18	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-04-11	Afg1l	AFG1 like ATPase	Lace1	lactation elevated 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar