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Gene: Ddx49 (DEAD-box helicase 49) Chinchilla lanigera

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Symbol:

Ddx49

Name:

DEAD-box helicase 49

RGD ID:

9015984

Description:

ENCODES a protein that exhibits RNA helicase activity (ortholog); INVOLVED IN positive regulation of cell growth (ortholog); regulation of rRNA stability (ortholog); ASSOCIATED WITH Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ortholog); progressive myoclonus epilepsy 8 (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; probable ATP-dependent RNA helicase DDX49

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DDX49 (DEAD-box helicase 49)	NCBI	Ortholog
Mus musculus (house mouse):	Ddx49 (DEAD box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ddx49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DDX49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DDX49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ddx49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DDX49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DDX49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ddx49 (DEAD-box helicase 49)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,760,860 - 2,767,665 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,760,692 - 2,767,709 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Megalencephaly-Polymicrogyria-Polydactyly-Hydrocephalus Syndrome 1 (ISO)

progressive myoclonus epilepsy 8 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of cell growth (ISO)

regulation of rRNA stability (ISO)

Cellular Component

nucleoplasm (ISO)

Molecular Function

protein binding (ISO)

RNA helicase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Ddx49
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	2,760,860 - 2,767,665 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	2,760,692 - 2,767,709 (-)	NCBI	ChiLan1.0	ChiLan1.0

DDX49
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	18,919,715 - 18,928,630 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	18,919,705 - 18,929,189 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	19,030,524 - 19,039,439 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	18,891,494 - 18,900,436 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	18,891,493 - 18,900,436	NCBI
Celera	19	18,935,308 - 18,944,265 (+)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	18,594,898 - 18,603,856 (+)	NCBI		HuRef
CHM1_1	19	19,030,151 - 19,039,109 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	19,055,473 - 19,064,418 (+)	NCBI		T2T-CHM13v2.0

Ddx49
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	70,745,516 - 70,755,121 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	70,745,516 - 70,755,139 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	70,292,866 - 70,302,471 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	70,292,866 - 70,302,489 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	72,816,765 - 72,826,351 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	73,221,855 - 73,231,441 (-)	NCBI		MGSCv36	mm8
Celera	8	72,849,364 - 72,858,949 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.15	NCBI

Ddx49
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	19,159,353 - 19,167,003 (+)	NCBI		GRCr8
mRatBN7.2	16	19,125,388 - 19,133,042 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	19,125,384 - 19,133,616 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	19,165,188 - 19,172,843 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	20,297,707 - 20,305,359 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	19,218,149 - 19,225,804 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	20,873,585 - 20,881,312 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	20,873,642 - 20,881,439 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	20,725,435 - 20,733,085 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	19,609,670 - 19,617,320 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	19,609,685 - 19,617,247 (+)	NCBI
Celera	16	19,315,664 - 19,323,314 (+)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

DDX49
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	23,781,013 - 23,789,938 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	22,787,215 - 22,796,150 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	18,357,682 - 18,366,614 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	19,364,949 - 19,373,869 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	19,364,949 - 19,373,869 (+)	Ensembl	panpan1.1		panPan2

DDX49
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	44,187,407 - 44,195,131 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	44,187,264 - 44,195,467 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	44,102,815 - 44,110,485 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	44,674,342 - 44,682,008 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	44,674,199 - 44,681,866 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	43,911,619 - 43,919,297 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	44,321,827 - 44,329,506 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	44,597,295 - 44,604,966 (-)	NCBI		UU_Cfam_GSD_1.0

Ddx49
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	202,865,241 - 202,873,586 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	2,413,505 - 2,422,759 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	2,414,380 - 2,422,730 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DDX49
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	58,922,988 - 58,930,716 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	58,922,985 - 58,930,710 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	58,721,788 - 58,729,508 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DDX49
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	17,376,050 - 17,384,625 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	17,376,273 - 17,384,663 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	1,938,428 - 1,948,153 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ddx49
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	1,963,738 - 1,970,634 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	1,963,701 - 1,970,634 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005409601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01068834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01077604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018919 ⟹ ENSCLAP00000018734

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955524	2,760,860 - 2,767,665 (-)	Ensembl

RefSeq Acc Id:

XM_005409601 ⟹ XP_005409658

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955524	2,760,692 - 2,767,709 (-)	NCBI

Sequence:

show sequence

CGCCGGAAGCACTACTCACAAGGTTCTCAGGGCTGCCGGAGAGGATGGGAGGCTTCTCGGAGCT
TGGGCTGTCCTCGTGGCTAGTAGAGCAATGTCGGCAGCTCGGCCTGAAGCAGCCCACGCCCGTG
CAGCTCGGCTGCATCCCAGCCATTCTGGAAGGTCGGGATTGCCTGGGTTGTGCCAAGACAGGCA
GCGGCAAGACGGCAGCATTTGTCCTGCCTATCTTACAGAAGCTATCAGAGGATCCCTATGGCAT
TTTCTGCCTGGTCCTGACCCCGACCAGGGAGCTAGCCTACCAGATCGCAGAGCAGTTCCGGGTG
CTGGGTAAGCCGCTGGGCCTGAAAGACTGCATCATCGTTGGTGGCATGGACATGGTAGCCCAGG
CCCTGGAGCTCTCCCGGAAACCACACGTGGTGATCGCCACGCCCGGGCGCCTGGCTGACCACCT
CCGCAGCTCCAACACCTTCCATATCAAGAAGATCCGCTTCCTGGTGATGGACGAGGCGGACCGG
CTGCTGGAACAGGGCTGCACTGACTTCACGGCCGACCTGGAGACCATCCTGGCGGCCGTGCCAG
CGCACAGACAGACGCTGCTCTTCAGCGCCACGCTCACAGACACGCTCCGGGAGCTGCAGGGCCT
GGCCACCAACCAGCCCTTCTTCTGGGAGGCGCAAGCCCCGGTCCGCACCGTGGAGCAGCTGGAC
CAGCGCTACCTGCTGGTGCCTGAGAAGGTGAAGGACGCCTACATGGTGCACCTGGTGCAGAGCT
TCCAGGATGAGCACGAGGACTGGTCCATCATCATCTTCACCAACACGTGCAAGACCTGCCAGAT
CCTGTGTATGATGCTCCGCAAGTTCAACTTCCCCACGGTGGCGTTGCACTCCATGATGAAGCAG
AAAGAGCGCTTTGCTGCCCTGGCCAAGTTCAAGTCCAGCGTCTACCGGATCCTGATCGCAACAG
ACGTGGCTTCACGGGGCCTGGACATCCCCACGGTGCAGGTGGTCATCAACCACAACACCCCCGG
GCTCCCCAAGATCTACATCCACCGGGTCGGCCGCACAGCCCGCGCAGGGCGGCAGGGCCAGGCC
ATCACGCTGGTGACACAGTACGACATCCACCTGCTGCACACCATCGAGGAGCAGATCAAGAAGC
AGCTGGAGGAGCTGCCGGTGGAGGAGGCCTCGGTGCTGCAGATCCTCACGCAGGTCAACGTGGT
CCGCAGGGAGTGCGAGATTAGACTGGAGGCGGCCCACTTCGACGAGAAGAGAGAGACCAACAAG
CGCAAGCAGCTCATCCTGGAGGGGAAGGACCCGGACCTGGAGGCCAAGAGAAGGGCCGAGCTGG
CCAAGATCAAGCGGAGAAACCGGCGCTTCAAGGAGAAGGTGGGGCAGGCGCTGAAGCGGCGGAA
GGACGCTGGCCGGGCAGGCCGCGGGGGGCAGCCGCCCCGGGACCTTGGAGCTGCCCCCGGGCCC
AGCCCGAGCTCCCATAGCTCCCTGCAGACAGCAGGGGCCCATGGACACACACCTTGTTCGGCTG
GAGGCGCAGAGGACGGACTGTGAGGGTGGCGTGGGCCCGGGACAGCGTGCCCGGGGGTACAGCT
GCTTAATAAAGGGGTTAGAGGTGCTTAATAAAGGGGTCTTCCTACGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005409658	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018734
	ENSCLAP00000018734.1

RefSeq Acc Id:

XP_005409658 ⟸ XM_005409601

- UniProtKB:

A0A8C2VPH4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGGFSELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKL
SEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATP
GRLADHLRSSNTFHIKKIRFLVMDEADRLLEQGCTDFTADLETILAAVPAHRQTLLFSATLTDT
LRELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYMVHLVQSFQDEHEDWSIIIFTN
TCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSVYRILIATDVASRGLDIPTVQVV
INHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLLHTIEEQIKKQLEELPVEEASVLQI
LTQVNVVRRECEIRLEAAHFDEKRETNKRKQLILEGKDPDLEAKRRAELAKIKRRNRRFKEKVG
QALKRRKDAGRAGRGGQPPRDLGAAPGPSPSSHSSLQTAGAHGHTPCSAGGAEDGL

hide sequence

Ensembl Acc Id:

ENSCLAP00000018734 ⟸ ENSCLAT00000018919

Protein Domains

DEAD-box RNA helicase Q Helicase ATP-binding Helicase C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012844	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018919	ENTREZGENE
	ENSCLAT00000018919.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	DEAD/DEAH_box_helicase_dom	UniProtKB/TrEMBL
	DEAD_box_RNA_helicase	UniProtKB/TrEMBL
	Helicase_ATP-bd	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	RNA-helicase_DEAD-box_CS	UniProtKB/TrEMBL
	RNA_helicase_DEAD_Q_motif	UniProtKB/TrEMBL
NCBI Gene	Ddx49	ENTREZGENE
PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	UniProtKB/TrEMBL
	RNA HELICASE	UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/TrEMBL
	Helicase_C	UniProtKB/TrEMBL
PROSITE	DEAD_ATP_HELICASE	UniProtKB/TrEMBL
	HELICASE_ATP_BIND_1	UniProtKB/TrEMBL
	HELICASE_CTER	UniProtKB/TrEMBL
	Q_MOTIF	UniProtKB/TrEMBL
SMART	DEXDc	UniProtKB/TrEMBL
	HELICc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8C2VPH4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Ddx49	DEAD-box helicase 49		DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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