Rab27b (RAB27B, member RAS oncogene family) - Rat Genome Database

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Gene: Rab27b (RAB27B, member RAS oncogene family) Chinchilla lanigera
Analyze
Symbol: Rab27b
Name: RAB27B, member RAS oncogene family
RGD ID: 9015917
Description: ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN anterograde axonal protein transport (ortholog); multivesicular body sorting pathway (ortholog); positive regulation of exocytosis (ortholog); ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN apical plasma membrane (ortholog); Golgi apparatus (ortholog); Golgi stack (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-27B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540239,357,500 - 39,415,530 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540239,357,500 - 39,415,530 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab27b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540239,357,500 - 39,415,530 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540239,357,500 - 39,415,530 (+)NCBIChiLan1.0ChiLan1.0
RAB27B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381854,717,857 - 54,895,516 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1854,717,860 - 54,895,516 (+)EnsemblGRCh38hg38GRCh38
GRCh371852,385,088 - 52,562,747 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361850,646,838 - 50,708,210 (+)NCBINCBI36Build 36hg18NCBI36
Build 341850,646,837 - 50,708,205NCBI
Celera1849,213,386 - 49,274,789 (+)NCBICelera
Cytogenetic Map18q21.2NCBI
HuRef1849,204,866 - 49,271,963 (+)NCBIHuRef
CHM1_11852,490,951 - 52,557,996 (+)NCBICHM1_1
T2T-CHM13v2.01854,920,965 - 55,098,601 (+)NCBIT2T-CHM13v2.0
Rab27b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391870,112,202 - 70,274,704 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1870,112,202 - 70,274,676 (-)EnsemblGRCm39 Ensembl
GRCm381869,979,131 - 70,141,633 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1869,979,131 - 70,141,605 (-)EnsemblGRCm38mm10GRCm38
MGSCv371870,138,785 - 70,301,244 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361870,109,025 - 70,178,955 (-)NCBIMGSCv36mm8
Celera1871,270,210 - 71,430,343 (-)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1843.89NCBI
Rab27b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81865,870,230 - 66,069,597 (-)NCBIGRCr8
mRatBN7.21863,597,554 - 63,794,124 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1863,600,937 - 63,757,180 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1865,691,199 - 65,753,434 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01866,369,540 - 66,432,265 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01864,251,252 - 64,313,623 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01868,486,006 - 68,644,595 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1868,488,942 - 68,551,558 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01867,638,697 - 67,796,869 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41866,682,627 - 66,747,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11866,755,827 - 66,821,014 (-)NCBI
Celera1861,692,971 - 61,755,141 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
RAB27B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21772,246,198 - 72,420,789 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11857,938,829 - 58,113,400 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01848,099,912 - 48,274,416 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11851,435,717 - 51,610,156 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1851,542,842 - 51,604,061 (+)Ensemblpanpan1.1panPan2
RAB27B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1120,695,100 - 20,832,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl120,700,514 - 20,832,975 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,679,208 - 21,816,880 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0120,580,907 - 20,718,800 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl120,582,171 - 20,718,762 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1120,634,374 - 20,771,706 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0120,529,314 - 20,667,225 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0120,801,076 - 20,938,844 (-)NCBIUU_Cfam_GSD_1.0
Rab27b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494433,802,183 - 33,937,163 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364979,039,546 - 9,098,039 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364979,039,552 - 9,176,182 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB27B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1104,241,571 - 104,417,084 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11104,241,500 - 104,418,721 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21114,582,754 - 114,759,909 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB27B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11824,809,497 - 24,975,765 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1824,814,626 - 24,875,818 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666060559,919 - 728,023 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab27b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624792307,608 - 363,568 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624792166,846 - 368,906 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011037   ⟹   ENSCLAP00000010902
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540239,357,500 - 39,415,530 (+)Ensembl
RefSeq Acc Id: XM_005372952   ⟹   XP_005373009
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540239,357,502 - 39,415,530 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013510869   ⟹   XP_013366323
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540239,357,500 - 39,415,530 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005373009 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366323 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010902
  ENSCLAP00000010902.1
Reference Protein Sequences
RefSeq Acc Id: XP_005373009   ⟸   XM_005372952
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VCG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366323   ⟸   XM_013510869
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000010902   ⟸   ENSCLAT00000011037


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011037 ENTREZGENE
  ENSCLAT00000011037.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Rab27a/b UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Rab27b ENTREZGENE
PANTHER LD44762P UniProtKB/TrEMBL
  RAB27B, MEMBER RAS ONCOGENE FAMILY UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VCG7 ENTREZGENE, UniProtKB/TrEMBL