Panx2 (pannexin 2) - Rat Genome Database

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Gene: Panx2 (pannexin 2) Chinchilla lanigera
Analyze
Symbol: Panx2
Name: pannexin 2
RGD ID: 9015405
Description: ENCODES a protein that exhibits gap junction channel activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell-cell signaling (ortholog); response to ischemia (ortholog); PARTICIPATES IN neuron-to-neuron signaling pathway via the electrical synapse; ASSOCIATED WITH autism spectrum disorder (ortholog); cholangiocarcinoma (ortholog); chromosome 22q13 duplication syndrome (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pannexin-2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,220,140 - 33,224,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,220,145 - 33,224,241 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Panx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,220,140 - 33,224,344 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,220,145 - 33,224,241 (+)NCBIChiLan1.0ChiLan1.0
PANX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,170,731 - 50,180,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,170,731 - 50,180,295 (+)EnsemblGRCh38hg38GRCh38
GRCh372250,609,160 - 50,618,724 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362248,951,317 - 48,960,848 (+)NCBINCBI36Build 36hg18NCBI36
Build 342248,911,646 - 48,921,176NCBI
Celera2234,484,072 - 34,493,636 (+)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,511,308 - 33,516,181 (+)NCBIHuRef
CHM1_12250,567,900 - 50,577,463 (+)NCBICHM1_1
T2T-CHM13v2.02250,677,468 - 50,687,032 (+)NCBIT2T-CHM13v2.0
Panx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391588,941,797 - 88,957,769 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1588,943,937 - 88,957,770 (+)EnsemblGRCm39 Ensembl
GRCm381589,059,057 - 89,073,566 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,059,734 - 89,073,567 (+)EnsemblGRCm38mm10GRCm38
MGSCv371588,890,156 - 88,901,337 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361588,887,870 - 88,897,644 (+)NCBIMGSCv36mm8
Celera1591,175,680 - 91,198,816 (+)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.57NCBI
Panx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,018,937 - 122,032,009 (+)NCBIGRCr8
mRatBN7.27120,139,259 - 120,153,056 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,139,294 - 120,152,361 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7121,890,228 - 121,900,756 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,116,393 - 124,126,921 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,079,501 - 124,090,033 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,042,948 - 130,053,034 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,042,947 - 130,053,032 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,728,893 - 129,738,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,364,190 - 127,374,412 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,398,419 - 127,408,176 (+)NCBI
Celera7116,613,592 - 116,623,771 (+)NCBICelera
Cytogenetic Map7q34NCBI
PANX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,075,546 - 60,085,200 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,761,947 - 62,771,600 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,398,717 - 30,408,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,404,516 - 49,409,063 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,404,624 - 49,408,045 (+)Ensemblpanpan1.1panPan2
PANX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11017,052,972 - 17,059,756 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1017,052,956 - 17,055,880 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1017,030,576 - 17,037,865 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,779,626 - 17,786,929 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,779,614 - 17,786,922 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,503,674 - 17,510,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,826,699 - 17,833,986 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,958,945 - 17,966,248 (-)NCBIUU_Cfam_GSD_1.0
Panx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945618,784 - 626,452 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629618,042 - 626,452 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629618,758 - 626,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PANX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5497,385 - 506,013 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15497,380 - 506,126 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,720,301 - 110,729,048 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PANX2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,662,350 - 32,671,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604592,684,542 - 92,693,776 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Panx2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752565,357 - 575,069 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752565,357 - 575,064 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025351   ⟹   ENSCLAP00000025106
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541333,220,140 - 33,224,344 (+)Ensembl
RefSeq Acc Id: XM_005379546   ⟹   XP_005379603
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541333,220,145 - 33,224,241 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379603 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000025106
  ENSCLAP00000025106.1
Reference Protein Sequences
RefSeq Acc Id: XP_005379603   ⟸   XM_005379546
- UniProtKB: A0A8C2W7B0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000025106   ⟸   ENSCLAT00000025351


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017242 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025351 ENTREZGENE
  ENSCLAT00000025351.1 UniProtKB/TrEMBL
InterPro Innexin UniProtKB/TrEMBL
  Pannexin UniProtKB/TrEMBL
NCBI Gene Panx2 ENTREZGENE
PANTHER PANNEXIN-2 UniProtKB/TrEMBL
  PTHR15759 UniProtKB/TrEMBL
PROSITE PANNEXIN UniProtKB/TrEMBL
UniProt A0A8C2W7B0 ENTREZGENE, UniProtKB/TrEMBL