Ngly1 (N-glycanase 1) - Rat Genome Database

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Gene: Ngly1 (N-glycanase 1) Chinchilla lanigera
Analyze
Symbol: Ngly1
Name: N-glycanase 1
RGD ID: 9015139
Description: ENCODES a protein that exhibits peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity (ortholog); INVOLVED IN glycoprotein catabolic process (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543017,564,319 - 17,645,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543017,564,319 - 17,645,564 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ngly1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543017,564,319 - 17,645,564 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543017,564,319 - 17,645,564 (-)NCBIChiLan1.0ChiLan1.0
NGLY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38325,718,944 - 25,790,039 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl325,718,944 - 25,790,039 (-)EnsemblGRCh38hg38GRCh38
GRCh37325,760,435 - 25,831,530 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36325,735,779 - 25,799,926 (-)NCBINCBI36Build 36hg18NCBI36
Build 34325,735,778 - 25,799,926NCBI
Celera325,697,316 - 25,768,403 (-)NCBICelera
Cytogenetic Map3p24.2NCBI
HuRef325,705,518 - 25,776,520 (-)NCBIHuRef
CHM1_1325,710,469 - 25,781,508 (-)NCBICHM1_1
T2T-CHM13v2.0325,721,799 - 25,792,805 (-)NCBIT2T-CHM13v2.0
Ngly1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39146,157,837 - 6,220,449 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl146,157,837 - 6,220,483 (-)EnsemblGRCm39 Ensembl
GRCm381416,249,314 - 16,311,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1416,249,280 - 16,311,926 (+)EnsemblGRCm38mm10GRCm38
MGSCv371417,081,828 - 17,144,440 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361415,042,581 - 15,105,193 (+)NCBIMGSCv36mm8
Celera1411,944,272 - 12,005,168 (+)NCBICelera
Cytogenetic Map14A1NCBI
cM Map147.08NCBI
Ngly1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81511,584,475 - 11,640,977 (-)NCBIGRCr8
mRatBN7.2159,153,738 - 9,210,228 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl159,153,738 - 9,204,630 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1511,296,510 - 11,347,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01512,209,299 - 12,259,873 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01510,509,774 - 10,560,348 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01510,405,453 - 10,455,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1510,405,164 - 10,455,956 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01514,450,836 - 14,501,356 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41510,704,196 - 10,750,564 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11510,715,806 - 10,723,084 (-)NCBI
Celera159,192,318 - 9,243,191 (-)NCBICelera
Cytogenetic Map15p16NCBI
NGLY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2225,678,406 - 25,742,623 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1325,683,169 - 25,747,391 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0325,618,768 - 25,683,293 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1325,950,189 - 26,014,998 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl325,950,701 - 26,021,504 (-)Ensemblpanpan1.1panPan2
NGLY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12318,044,479 - 18,101,937 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2318,039,456 - 18,099,660 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2318,042,146 - 18,099,607 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02318,347,625 - 18,405,157 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2318,342,554 - 18,405,154 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12318,166,197 - 18,223,888 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02318,269,312 - 18,326,783 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02318,383,003 - 18,440,512 (+)NCBIUU_Cfam_GSD_1.0
Ngly1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118184,105,190 - 184,155,991 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647317,239,966 - 17,294,791 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647317,243,763 - 17,294,609 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NGLY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1312,616,567 - 12,685,823 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11312,616,564 - 12,683,637 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21314,229,512 - 14,291,711 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NGLY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11570,381,992 - 70,449,373 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1570,382,004 - 70,449,341 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604143,521,267 - 43,588,968 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ngly1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247883,626,893 - 3,707,680 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247883,631,142 - 3,707,725 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000009703   ⟹   ENSCLAP00000009574
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543017,564,319 - 17,645,564 (-)Ensembl
RefSeq Acc Id: XM_013515676   ⟹   XP_013371130
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543017,564,319 - 17,645,564 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371130 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009574
  ENSCLAP00000009574.1
RefSeq Acc Id: XP_013371130   ⟸   XM_013515676
- UniProtKB: A0A8C2V356 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009574   ⟸   ENSCLAT00000009703
Protein Domains
PAW


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006643 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009703 ENTREZGENE
  ENSCLAT00000009703.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2190 UniProtKB/TrEMBL
  2.20.25.10 UniProtKB/TrEMBL
  2.60.120.1020 UniProtKB/TrEMBL
  3.10.620.30 UniProtKB/TrEMBL
InterPro Galactose-bd-like_sf UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  PAW_sf UniProtKB/TrEMBL
  Peptide_N_glycanase_PAW_dom UniProtKB/TrEMBL
  PUB-like_dom_sf UniProtKB/TrEMBL
  PUB_domain UniProtKB/TrEMBL
  Transglutaminase-like UniProtKB/TrEMBL
NCBI Gene Ngly1 ENTREZGENE
PANTHER PEPTIDE N-GLYCANASE PNGASE -RELATED UniProtKB/TrEMBL
  PEPTIDE-N(4)-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE UniProtKB/TrEMBL
Pfam PAW UniProtKB/TrEMBL
  PUB UniProtKB/TrEMBL
  Transglut_core UniProtKB/TrEMBL
PROSITE PAW UniProtKB/TrEMBL
SMART PAW UniProtKB/TrEMBL
  PUG UniProtKB/TrEMBL
  TGc UniProtKB/TrEMBL
Superfamily-SCOP SSF143503 UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF54001 UniProtKB/TrEMBL
UniProt A0A8C2V356 ENTREZGENE, UniProtKB/TrEMBL