Irf2 (interferon regulatory factor 2)

Gene: Irf2 (interferon regulatory factor 2) Chinchilla lanigera

Analyze

Symbol:

Irf2

Name:

interferon regulatory factor 2

RGD ID:

9015054

Description:

ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	24,433,258 - 24,517,618 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	24,433,334 - 24,517,618 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (ISO)

regulation of transcription by RNA polymerase II (ISO)

Cellular Component

cytosol (ISO)

focal adhesion (ISO)

nucleoplasm (ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (ISO)

protein binding (ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific double-stranded DNA binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Irf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	24,433,258 - 24,517,618 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	24,433,334 - 24,517,618 (+)	NCBI	ChiLan1.0	ChiLan1.0

IRF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	184,387,729 - 184,474,550 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	184,385,702 - 184,474,558 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	185,308,883 - 185,395,704 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	185,545,870 - 185,632,720 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	185,684,063 - 185,770,852	NCBI
Celera	4	182,637,543 - 182,724,388 (-)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	181,063,134 - 181,150,003 (-)	NCBI		HuRef
CHM1_1	4	185,285,381 - 185,372,245 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	187,731,563 - 187,818,372 (-)	NCBI		T2T-CHM13v2.0

Irf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	47,192,751 - 47,300,493 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	47,192,767 - 47,300,493 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	46,739,745 - 46,847,458 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	46,739,732 - 46,847,458 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	47,825,099 - 47,932,812 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	48,238,592 - 48,346,275 (+)	NCBI		MGSCv36	mm8
Celera	8	49,422,414 - 49,530,424 (+)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	26.42	NCBI

Irf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	52,171,855 - 52,283,620 (-)	NCBI		GRCr8
mRatBN7.2	16	45,439,215 - 45,550,054 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	45,439,225 - 45,550,024 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	50,839,474 - 50,949,404 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	54,206,552 - 54,316,157 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	49,478,876 - 49,588,780 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	48,582,354 - 48,732,129 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	48,582,026 - 48,732,932 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	48,294,559 - 48,446,482 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	48,672,930 - 48,725,511 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	48,672,601 - 48,725,589 (-)	NCBI
Celera	16	43,443,543 - 43,496,401 (-)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

IRF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	182,111,693 - 182,198,550 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	182,475,293 - 182,562,154 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	176,554,979 - 176,641,827 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	188,779,134 - 188,865,764 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	188,779,134 - 188,865,764 (-)	Ensembl	panpan1.1		panPan2

IRF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	46,053,148 - 46,131,677 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	46,053,206 - 46,130,781 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	46,545,906 - 46,625,442 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	48,268,829 - 48,348,786 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	48,268,843 - 48,348,784 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	46,233,717 - 46,313,550 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	46,848,118 - 46,927,755 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	46,981,845 - 47,061,671 (+)	NCBI		UU_Cfam_GSD_1.0

Irf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	33,316,727 - 33,403,291 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	4,706,650 - 4,793,701 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	4,706,688 - 4,793,236 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IRF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	45,546,783 - 45,634,704 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	45,546,779 - 45,693,241 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	52,135,048 - 52,232,993 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IRF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	130,352,809 - 130,440,485 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	130,350,262 - 130,440,600 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	110,607,609 - 110,696,393 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Irf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	15,164,744 - 15,251,745 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	15,167,228 - 15,251,689 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005373488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005373489	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005373492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005373493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005373494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01079451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000023446 ⟹ ENSCLAP00000023225

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	24,433,258 - 24,517,618 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000023447 ⟹ ENSCLAP00000023226

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	24,434,814 - 24,516,622 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000023448 ⟹ ENSCLAP00000023227

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	24,477,039 - 24,517,618 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000023449 ⟹ ENSCLAP00000023228

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	24,478,704 - 24,517,227 (+)	Ensembl

RefSeq Acc Id:

XM_005373488 ⟹ XP_005373545

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	24,433,820 - 24,517,618 (+)	NCBI

Sequence:

show sequence

TTTAATTTCACTTTTGGATTTGCAGATGTGGAGAGGTGGCTCCGCGGACGCAGATCTGCTCTGT
GTGATTCTGCGCCCCAGAAGGGTACCATGCCGGTGGAAAGGATGCGAATGCGCCCCTGGCTGGA
GGAACAGATAAATTCAAATACAATACCGGGGTTAAGGTGGATTAACAAGGAAAAGAAGATTTTC
CAGATCCCGTGGATGCATGCGGCTCGGCATGGGTGGGATGTGGAGAAAGATGCACCACTCTTTA
GAAACTGGGCAATCCATACAGGGAAGCATCAGCCAGGAGTAGATAAACCTGACCCAAAAACATG
GAAGGCAAACTTTCGATGTGCCATGAATTCCTTGCCTGATATTGAAGAAGTTAAAGATAAAAGT
ATAAAGAAAGGAAACAATGCCTTCAGAGTATACCGGATGCTGCCCTTATCTGAACGACCTTCGA
AGAAAGGAAAGAAACCAAAGACAGAAAAAGAAGACAGAGTTAAGCACATCAAGCAAGAACCAGT
TGAGTCATCTTTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTATGCGGTCCTGACT
TCAGCTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCCCACCTGG
ACAGCAACATTGAGGATCAGGAGATCGTCACTAATCCGCCAGACATTTGCCAAGTTGTGGAGGT
GACCACTGAGAGCGACGAGCAGCCGGTCAGCCTGAGTGAGCTCTACCCCCTGCAGATTTCCCCT
GTGTCTTCCTACGCAGAAAGTGAAACTACCGATAGCGTGCCCAGTGATGAGGAGAGTGCCGAGG
GGAGACCACACTGGCGGAAGAGAAACATCGAAGGCAAACAGTACCTCAGCAACATGGGGACACG
GAGCACCTACCTGCTGCCCAGCGTGGCATCCTTTGTCACTTCCAACAAGCCCGATCTCCAGGTC
ACCATCAAGGAGGAGAGTTGTACGATGCCTTACAGCTCCTGGCCCACACTTTCAGACCTCTCTC
TCCCTTCGTCGGTGACCCCCACGCCCAGCAGCAGTCGGCCGGACAGGGAGACTCGGGCCAGTGT
CATCAAGAAGACATCAGATATCACCCAGCCCCGAGTCAAGAGCTGCTAAGTCTTTGACCCTCCC
TAGTGGTTGTTGGGATTTCTTGGCTTTGTGTTACTGTTTGTATTTTATTTTCTCTCTGACACCT
ATTTTAGACAAATATTAAGGGGAAAAGCCTTGACAATAGAACAATGATTGCTGTGTCCAACTCC
AGTACTGGAGCATTTTTTTTTAAACTCAGGACTCCAGCCCCTTGGTATTTCTAGAGCCTGCTGG
ATCTCCCAGGGCTACTCCCTCAAGTTCAAGGACCAACAGCCACATGGGCAGTGGAGGTGCTGCA
TTGCCTATGGTCAAGGCCAGCATGGTGGAGTGGATGCCTCAGAATGGACGAGAAAATGTGAACT
AGCTGGAATTTTTTATTGTTGTGAATATGTACATAGGGCAGTACTAGCAACGTTGCAGTCTGCT
TCCGCACCTTATCTTAAAGCACTTAGGCCTTCTTGTGATCTTGCTCTATCTCACAGCACATACA
GCGCCCCTTCTTTCCCTGTTGCCCTGCCTCCTACCCTGTCCCGGCCAGCTTCTTTCCTCCTTTT
CCTCCCTCAAAGGCTGTGCTCTACACCCTGGAGGAGGAGAAGAAGAAAATGAACTTTTCCACAG
ATGTCCCATTTTAAGACTGCTTGGGGAAAAAAAAAAAGTCTAATCTGCTATGCTTGAATGCCAC
GCGGTACAAAAGAAAACTATCATGGAAATATTATGCAAATTCCCAGATTTGAAGACGAAAATAC
TCTAATTCTAACCAGAGCAAGCTTTTTTATTTTTTATACAGGGAATATTTTATTCAAGGTAAAA
TTCTAAATAAAATATAATTGTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAAGATTCCTT
TTCTTGTTTATCAGCAGTTGTTATTACATCCTTGTGGCACATTTTTTTTAATTTTGTAAAGGTG
AGAAAAGCTTTTATGAGCTCATGTAGCAATCAAATTATCCTGTGGATTGATAATAAATGAATAT
GATATATAGTTAAATTTTTAA

hide sequence

RefSeq Acc Id:

XM_005373489 ⟹ XP_005373546

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	24,433,334 - 24,517,618 (+)	NCBI

Sequence:

show sequence

TCAGCGCTTCGCAGTTTCCTCTCCTTGTTTTGCTTTCGATCTGGACTGTTCTCAGGCGAGCCGG
GGAGTAACTTTTAGTTTTGCTCCTGCGATTATTCAACTGACGGACTTTCATTTCCATTTCACAC
ACCCTAGCAACACTTACACCTTGCGGAATTGTATTGGTAGCGTTGAAAAAGCACACTGAGAGAA
GGGTACCATGCCGGTGGAAAGGATGCGAATGCGCCCCTGGCTGGAGGAACAGATAAATTCAAAT
ACAATACCGGGGTTAAGGTGGATTAACAAGGAAAAGAAGATTTTCCAGATCCCGTGGATGCATG
CGGCTCGGCATGGGTGGGATGTGGAGAAAGATGCACCACTCTTTAGAAACTGGGCAATCCATAC
AGGGAAGCATCAGCCAGGAGTAGATAAACCTGACCCAAAAACATGGAAGGCAAACTTTCGATGT
GCCATGAATTCCTTGCCTGATATTGAAGAAGTTAAAGATAAAAGTATAAAGAAAGGAAACAATG
CCTTCAGAGTATACCGGATGCTGCCCTTATCTGAACGACCTTCGAAGAAAGGAAAGAAACCAAA
GACAGAAAAAGAAGACAGAGTTAAGCACATCAAGCAAGAACCAGTTGAGTCATCTTTGGGGCTT
AGTAATGGAGTAAGTGATCTTTCTCCTGAGTATGCGGTCCTGACTTCAGCTATAAAAAATGAAG
TGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCCCACCTGGACAGCAACATTGAGGATCA
GGAGATCGTCACTAATCCGCCAGACATTTGCCAAGTTGTGGAGGTGACCACTGAGAGCGACGAG
CAGCCGGTCAGCCTGAGTGAGCTCTACCCCCTGCAGATTTCCCCTGTGTCTTCCTACGCAGAAA
GTGAAACTACCGATAGCGTGCCCAGTGATGAGGAGAGTGCCGAGGGGAGACCACACTGGCGGAA
GAGAAACATCGAAGGCAAACAGTACCTCAGCAACATGGGGACACGGAGCACCTACCTGCTGCCC
AGCGTGGCATCCTTTGTCACTTCCAACAAGCCCGATCTCCAGGTCACCATCAAGGAGGAGAGTT
GTACGATGCCTTACAGCTCCTGGCCCACACTTTCAGACCTCTCTCTCCCTTCGTCGGTGACCCC
CACGCCCAGCAGCAGTCGGCCGGACAGGGAGACTCGGGCCAGTGTCATCAAGAAGACATCAGAT
ATCACCCAGCCCCGAGTCAAGAGCTGCTAAGTCTTTGACCCTCCCTAGTGGTTGTTGGGATTTC
TTGGCTTTGTGTTACTGTTTGTATTTTATTTTCTCTCTGACACCTATTTTAGACAAATATTAAG
GGGAAAAGCCTTGACAATAGAACAATGATTGCTGTGTCCAACTCCAGTACTGGAGCATTTTTTT
TTAAACTCAGGACTCCAGCCCCTTGGTATTTCTAGAGCCTGCTGGATCTCCCAGGGCTACTCCC
TCAAGTTCAAGGACCAACAGCCACATGGGCAGTGGAGGTGCTGCATTGCCTATGGTCAAGGCCA
GCATGGTGGAGTGGATGCCTCAGAATGGACGAGAAAATGTGAACTAGCTGGAATTTTTTATTGT
TGTGAATATGTACATAGGGCAGTACTAGCAACGTTGCAGTCTGCTTCCGCACCTTATCTTAAAG
CACTTAGGCCTTCTTGTGATCTTGCTCTATCTCACAGCACATACAGCGCCCCTTCTTTCCCTGT
TGCCCTGCCTCCTACCCTGTCCCGGCCAGCTTCTTTCCTCCTTTTCCTCCCTCAAAGGCTGTGC
TCTACACCCTGGAGGAGGAGAAGAAGAAAATGAACTTTTCCACAGATGTCCCATTTTAAGACTG
CTTGGGGAAAAAAAAAAAGTCTAATCTGCTATGCTTGAATGCCACGCGGTACAAAAGAAAACTA
TCATGGAAATATTATGCAAATTCCCAGATTTGAAGACGAAAATACTCTAATTCTAACCAGAGCA
AGCTTTTTTATTTTTTATACAGGGAATATTTTATTCAAGGTAAAATTCTAAATAAAATATAATT
GTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAAGATTCCTTTTCTTGTTTATCAGCAGTT
GTTATTACATCCTTGTGGCACATTTTTTTTAATTTTGTAAAGGTGAGAAAAGCTTTTATGAGCT
CATGTAGCAATCAAATTATCCTGTGGATTGATAATAAATGAATATGATATATAGTTAAATTTTT
AA

hide sequence

RefSeq Acc Id:

XM_005373492 ⟹ XP_005373549

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	24,477,039 - 24,517,618 (+)	NCBI

Sequence:

show sequence

CTCAAAGAACTTTCCAGACTGGAGAAGGGTACCATGCCGGTGGAAAGGATGCGAATGCGCCCCT
GGCTGGAGGAACAGATAAATTCAAATACAATACCGGGGTTAAGGTGGATTAACAAGGAAAAGAA
GATTTTCCAGATCCCGTGGATGCATGCGGCTCGGCATGGGTGGGATGTGGAGAAAGATGCACCA
CTCTTTAGAAACTGGGCAATCCATACAGGGAAGCATCAGCCAGGAGTAGATAAACCTGACCCAA
AAACATGGAAGGCAAACTTTCGATGTGCCATGAATTCCTTGCCTGATATTGAAGAAGTTAAAGA
TAAAAGTATAAAGAAAGGAAACAATGCCTTCAGAGTATACCGGATGCTGCCCTTATCTGAACGA
CCTTCGAAGAAAGGAAAGAAACCAAAGACAGAAAAAGAAGACAGAGTTAAGCACATCAAGCAAG
AACCAGTTGAGTCATCTTTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTATGCGGT
CCTGACTTCAGCTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCC
CACCTGGACAGCAACATTGAGGATCAGGAGATCGTCACTAATCCGCCAGACATTTGCCAAGTTG
TGGAGGTGACCACTGAGAGCGACGAGCAGCCGGTCAGCCTGAGTGAGCTCTACCCCCTGCAGAT
TTCCCCTGTGTCTTCCTACGCAGAAAGTGAAACTACCGATAGCGTGCCCAGTGATGAGGAGAGT
GCCGAGGGGAGACCACACTGGCGGAAGAGAAACATCGAAGGCAAACAGTACCTCAGCAACATGG
GGACACGGAGCACCTACCTGCTGCCCAGCGTGGCATCCTTTGTCACTTCCAACAAGCCCGATCT
CCAGGTCACCATCAAGGAGGAGAGTTGTACGATGCCTTACAGCTCCTGGCCCACACTTTCAGAC
CTCTCTCTCCCTTCGTCGGTGACCCCCACGCCCAGCAGCAGTCGGCCGGACAGGGAGACTCGGG
CCAGTGTCATCAAGAAGACATCAGATATCACCCAGCCCCGAGTCAAGAGCTGCTAAGTCTTTGA
CCCTCCCTAGTGGTTGTTGGGATTTCTTGGCTTTGTGTTACTGTTTGTATTTTATTTTCTCTCT
GACACCTATTTTAGACAAATATTAAGGGGAAAAGCCTTGACAATAGAACAATGATTGCTGTGTC
CAACTCCAGTACTGGAGCATTTTTTTTTAAACTCAGGACTCCAGCCCCTTGGTATTTCTAGAGC
CTGCTGGATCTCCCAGGGCTACTCCCTCAAGTTCAAGGACCAACAGCCACATGGGCAGTGGAGG
TGCTGCATTGCCTATGGTCAAGGCCAGCATGGTGGAGTGGATGCCTCAGAATGGACGAGAAAAT
GTGAACTAGCTGGAATTTTTTATTGTTGTGAATATGTACATAGGGCAGTACTAGCAACGTTGCA
GTCTGCTTCCGCACCTTATCTTAAAGCACTTAGGCCTTCTTGTGATCTTGCTCTATCTCACAGC
ACATACAGCGCCCCTTCTTTCCCTGTTGCCCTGCCTCCTACCCTGTCCCGGCCAGCTTCTTTCC
TCCTTTTCCTCCCTCAAAGGCTGTGCTCTACACCCTGGAGGAGGAGAAGAAGAAAATGAACTTT
TCCACAGATGTCCCATTTTAAGACTGCTTGGGGAAAAAAAAAAAGTCTAATCTGCTATGCTTGA
ATGCCACGCGGTACAAAAGAAAACTATCATGGAAATATTATGCAAATTCCCAGATTTGAAGACG
AAAATACTCTAATTCTAACCAGAGCAAGCTTTTTTATTTTTTATACAGGGAATATTTTATTCAA
GGTAAAATTCTAAATAAAATATAATTGTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAAG
ATTCCTTTTCTTGTTTATCAGCAGTTGTTATTACATCCTTGTGGCACATTTTTTTTAATTTTGT
AAAGGTGAGAAAAGCTTTTATGAGCTCATGTAGCAATCAAATTATCCTGTGGATTGATAATAAA
TGAATATGATATATAGTTAAATTTTTAA

hide sequence

RefSeq Acc Id:

XM_005373493 ⟹ XP_005373550

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	24,475,981 - 24,517,618 (+)	NCBI

Sequence:

show sequence

TGAAAAGAACATTGATTTGCAGTAGAAGGGTACCATGCCGGTGGAAAGGATGCGAATGCGCCCC
TGGCTGGAGGAACAGATAAATTCAAATACAATACCGGGGTTAAGGTGGATTAACAAGGAAAAGA
AGATTTTCCAGATCCCGTGGATGCATGCGGCTCGGCATGGGTGGGATGTGGAGAAAGATGCACC
ACTCTTTAGAAACTGGGCAATCCATACAGGGAAGCATCAGCCAGGAGTAGATAAACCTGACCCA
AAAACATGGAAGGCAAACTTTCGATGTGCCATGAATTCCTTGCCTGATATTGAAGAAGTTAAAG
ATAAAAGTATAAAGAAAGGAAACAATGCCTTCAGAGTATACCGGATGCTGCCCTTATCTGAACG
ACCTTCGAAGAAAGGAAAGAAACCAAAGACAGAAAAAGAAGACAGAGTTAAGCACATCAAGCAA
GAACCAGTTGAGTCATCTTTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTATGCGG
TCCTGACTTCAGCTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTC
CCACCTGGACAGCAACATTGAGGATCAGGAGATCGTCACTAATCCGCCAGACATTTGCCAAGTT
GTGGAGGTGACCACTGAGAGCGACGAGCAGCCGGTCAGCCTGAGTGAGCTCTACCCCCTGCAGA
TTTCCCCTGTGTCTTCCTACGCAGAAAGTGAAACTACCGATAGCGTGCCCAGTGATGAGGAGAG
TGCCGAGGGGAGACCACACTGGCGGAAGAGAAACATCGAAGGCAAACAGTACCTCAGCAACATG
GGGACACGGAGCACCTACCTGCTGCCCAGCGTGGCATCCTTTGTCACTTCCAACAAGCCCGATC
TCCAGGTCACCATCAAGGAGGAGAGTTGTACGATGCCTTACAGCTCCTGGCCCACACTTTCAGA
CCTCTCTCTCCCTTCGTCGGTGACCCCCACGCCCAGCAGCAGTCGGCCGGACAGGGAGACTCGG
GCCAGTGTCATCAAGAAGACATCAGATATCACCCAGCCCCGAGTCAAGAGCTGCTAAGTCTTTG
ACCCTCCCTAGTGGTTGTTGGGATTTCTTGGCTTTGTGTTACTGTTTGTATTTTATTTTCTCTC
TGACACCTATTTTAGACAAATATTAAGGGGAAAAGCCTTGACAATAGAACAATGATTGCTGTGT
CCAACTCCAGTACTGGAGCATTTTTTTTTAAACTCAGGACTCCAGCCCCTTGGTATTTCTAGAG
CCTGCTGGATCTCCCAGGGCTACTCCCTCAAGTTCAAGGACCAACAGCCACATGGGCAGTGGAG
GTGCTGCATTGCCTATGGTCAAGGCCAGCATGGTGGAGTGGATGCCTCAGAATGGACGAGAAAA
TGTGAACTAGCTGGAATTTTTTATTGTTGTGAATATGTACATAGGGCAGTACTAGCAACGTTGC
AGTCTGCTTCCGCACCTTATCTTAAAGCACTTAGGCCTTCTTGTGATCTTGCTCTATCTCACAG
CACATACAGCGCCCCTTCTTTCCCTGTTGCCCTGCCTCCTACCCTGTCCCGGCCAGCTTCTTTC
CTCCTTTTCCTCCCTCAAAGGCTGTGCTCTACACCCTGGAGGAGGAGAAGAAGAAAATGAACTT
TTCCACAGATGTCCCATTTTAAGACTGCTTGGGGAAAAAAAAAAAGTCTAATCTGCTATGCTTG
AATGCCACGCGGTACAAAAGAAAACTATCATGGAAATATTATGCAAATTCCCAGATTTGAAGAC
GAAAATACTCTAATTCTAACCAGAGCAAGCTTTTTTATTTTTTATACAGGGAATATTTTATTCA
AGGTAAAATTCTAAATAAAATATAATTGTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAA
GATTCCTTTTCTTGTTTATCAGCAGTTGTTATTACATCCTTGTGGCACATTTTTTTTAATTTTG
TAAAGGTGAGAAAAGCTTTTATGAGCTCATGTAGCAATCAAATTATCCTGTGGATTGATAATAA
ATGAATATGATATATAGTTAAATTTTTAA

hide sequence

RefSeq Acc Id:

XM_005373494 ⟹ XP_005373551

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	24,440,763 - 24,517,618 (+)	NCBI

Sequence:

show sequence

TATTTGCTTGGAGTAACCAGAGAAGGGTACCATGCCGGTGGAAAGGATGCGAATGCGCCCCTGG
CTGGAGGAACAGATAAATTCAAATACAATACCGGGGTTAAGGTGGATTAACAAGGAAAAGAAGA
TTTTCCAGATCCCGTGGATGCATGCGGCTCGGCATGGGTGGGATGTGGAGAAAGATGCACCACT
CTTTAGAAACTGGGCAATCCATACAGGGAAGCATCAGCCAGGAGTAGATAAACCTGACCCAAAA
ACATGGAAGGCAAACTTTCGATGTGCCATGAATTCCTTGCCTGATATTGAAGAAGTTAAAGATA
AAAGTATAAAGAAAGGAAACAATGCCTTCAGAGTATACCGGATGCTGCCCTTATCTGAACGACC
TTCGAAGAAAGGAAAGAAACCAAAGACAGAAAAAGAAGACAGAGTTAAGCACATCAAGCAAGAA
CCAGTTGAGTCATCTTTGGGGCTTAGTAATGGAGTAAGTGATCTTTCTCCTGAGTATGCGGTCC
TGACTTCAGCTATAAAAAATGAAGTGGATAGTACGGTGAACATCATAGTTGTAGGACAGTCCCA
CCTGGACAGCAACATTGAGGATCAGGAGATCGTCACTAATCCGCCAGACATTTGCCAAGTTGTG
GAGGTGACCACTGAGAGCGACGAGCAGCCGGTCAGCCTGAGTGAGCTCTACCCCCTGCAGATTT
CCCCTGTGTCTTCCTACGCAGAAAGTGAAACTACCGATAGCGTGCCCAGTGATGAGGAGAGTGC
CGAGGGGAGACCACACTGGCGGAAGAGAAACATCGAAGGCAAACAGTACCTCAGCAACATGGGG
ACACGGAGCACCTACCTGCTGCCCAGCGTGGCATCCTTTGTCACTTCCAACAAGCCCGATCTCC
AGGTCACCATCAAGGAGGAGAGTTGTACGATGCCTTACAGCTCCTGGCCCACACTTTCAGACCT
CTCTCTCCCTTCGTCGGTGACCCCCACGCCCAGCAGCAGTCGGCCGGACAGGGAGACTCGGGCC
AGTGTCATCAAGAAGACATCAGATATCACCCAGCCCCGAGTCAAGAGCTGCTAAGTCTTTGACC
CTCCCTAGTGGTTGTTGGGATTTCTTGGCTTTGTGTTACTGTTTGTATTTTATTTTCTCTCTGA
CACCTATTTTAGACAAATATTAAGGGGAAAAGCCTTGACAATAGAACAATGATTGCTGTGTCCA
ACTCCAGTACTGGAGCATTTTTTTTTAAACTCAGGACTCCAGCCCCTTGGTATTTCTAGAGCCT
GCTGGATCTCCCAGGGCTACTCCCTCAAGTTCAAGGACCAACAGCCACATGGGCAGTGGAGGTG
CTGCATTGCCTATGGTCAAGGCCAGCATGGTGGAGTGGATGCCTCAGAATGGACGAGAAAATGT
GAACTAGCTGGAATTTTTTATTGTTGTGAATATGTACATAGGGCAGTACTAGCAACGTTGCAGT
CTGCTTCCGCACCTTATCTTAAAGCACTTAGGCCTTCTTGTGATCTTGCTCTATCTCACAGCAC
ATACAGCGCCCCTTCTTTCCCTGTTGCCCTGCCTCCTACCCTGTCCCGGCCAGCTTCTTTCCTC
CTTTTCCTCCCTCAAAGGCTGTGCTCTACACCCTGGAGGAGGAGAAGAAGAAAATGAACTTTTC
CACAGATGTCCCATTTTAAGACTGCTTGGGGAAAAAAAAAAAGTCTAATCTGCTATGCTTGAAT
GCCACGCGGTACAAAAGAAAACTATCATGGAAATATTATGCAAATTCCCAGATTTGAAGACGAA
AATACTCTAATTCTAACCAGAGCAAGCTTTTTTATTTTTTATACAGGGAATATTTTATTCAAGG
TAAAATTCTAAATAAAATATAATTGTTTTTTATCTTTTCTACAGCAAATTTATAATTTTAAGAT
TCCTTTTCTTGTTTATCAGCAGTTGTTATTACATCCTTGTGGCACATTTTTTTTAATTTTGTAA
AGGTGAGAAAAGCTTTTATGAGCTCATGTAGCAATCAAATTATCCTGTGGATTGATAATAAATG
AATATGATATATAGTTAAATTTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005373545	(Get FASTA)	NCBI Sequence Viewer
	XP_005373546	(Get FASTA)	NCBI Sequence Viewer
	XP_005373549	(Get FASTA)	NCBI Sequence Viewer
	XP_005373550	(Get FASTA)	NCBI Sequence Viewer
	XP_005373551	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000023225
	ENSCLAP00000023225.1
	ENSCLAP00000023226
	ENSCLAP00000023226.1
	ENSCLAP00000023227.1
	ENSCLAP00000023228.1

RefSeq Acc Id:

XP_005373546 ⟸ XM_005373489

- UniProtKB:

A0A8C2W0P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVERMRMRPWLEEQINSNTIPGLRWINKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK
HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPKTE
KEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDSNIEDQEI
VTNPPDICQVVEVTTESDEQPVSLSELYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRN
IEGKQYLSNMGTRSTYLLPSVASFVTSNKPDLQVTIKEESCTMPYSSWPTLSDLSLPSSVTPTP
SSSRPDRETRASVIKKTSDITQPRVKSC

hide sequence

RefSeq Acc Id:

XP_005373545 ⟸ XM_005373488

- UniProtKB:

A0A8C2W0P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVERMRMRPWLEEQINSNTIPGLRWINKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK
HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPKTE
KEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDSNIEDQEI
VTNPPDICQVVEVTTESDEQPVSLSELYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRN
IEGKQYLSNMGTRSTYLLPSVASFVTSNKPDLQVTIKEESCTMPYSSWPTLSDLSLPSSVTPTP
SSSRPDRETRASVIKKTSDITQPRVKSC

hide sequence

RefSeq Acc Id:

XP_005373551 ⟸ XM_005373494

- UniProtKB:

A0A8C2W0P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVERMRMRPWLEEQINSNTIPGLRWINKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK
HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPKTE
KEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDSNIEDQEI
VTNPPDICQVVEVTTESDEQPVSLSELYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRN
IEGKQYLSNMGTRSTYLLPSVASFVTSNKPDLQVTIKEESCTMPYSSWPTLSDLSLPSSVTPTP
SSSRPDRETRASVIKKTSDITQPRVKSC

hide sequence

RefSeq Acc Id:

XP_005373550 ⟸ XM_005373493

- UniProtKB:

A0A8C2W0P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVERMRMRPWLEEQINSNTIPGLRWINKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK
HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPKTE
KEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDSNIEDQEI
VTNPPDICQVVEVTTESDEQPVSLSELYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRN
IEGKQYLSNMGTRSTYLLPSVASFVTSNKPDLQVTIKEESCTMPYSSWPTLSDLSLPSSVTPTP
SSSRPDRETRASVIKKTSDITQPRVKSC

hide sequence

RefSeq Acc Id:

XP_005373549 ⟸ XM_005373492

- UniProtKB:

A0A8C2W0P9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPVERMRMRPWLEEQINSNTIPGLRWINKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK
HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSKKGKKPKTE
KEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDSNIEDQEI
VTNPPDICQVVEVTTESDEQPVSLSELYPLQISPVSSYAESETTDSVPSDEESAEGRPHWRKRN
IEGKQYLSNMGTRSTYLLPSVASFVTSNKPDLQVTIKEESCTMPYSSWPTLSDLSLPSSVTPTP
SSSRPDRETRASVIKKTSDITQPRVKSC

hide sequence

RefSeq Acc Id:

ENSCLAP00000023228 ⟸ ENSCLAT00000023449

RefSeq Acc Id:

ENSCLAP00000023226 ⟸ ENSCLAT00000023447

RefSeq Acc Id:

ENSCLAP00000023227 ⟸ ENSCLAT00000023448

RefSeq Acc Id:

ENSCLAP00000023225 ⟸ ENSCLAT00000023446

Protein Domains

IRF tryptophan pentad repeat

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015934	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000023446	ENTREZGENE
	ENSCLAT00000023446.1	UniProtKB/TrEMBL
	ENSCLAT00000023447	ENTREZGENE
	ENSCLAT00000023447.1	UniProtKB/TrEMBL
	ENSCLAT00000023448.1	UniProtKB/TrEMBL
	ENSCLAT00000023449.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
InterPro	Interferon_reg_fac_CS	UniProtKB/TrEMBL
	Interferon_reg_fact_DNA-bd_dom	UniProtKB/TrEMBL
	IRF1/IRF2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	Irf2	ENTREZGENE
PANTHER	INTERFERON REGULATORY FACTOR	UniProtKB/TrEMBL
	PTHR11949:SF22	UniProtKB/TrEMBL
Pfam	IRF	UniProtKB/TrEMBL
PIRSF	IFN_RF1/2	UniProtKB/TrEMBL
PRINTS	INTFRNREGFCT	UniProtKB/TrEMBL
PROSITE	IRF_1	UniProtKB/TrEMBL
	IRF_2	UniProtKB/TrEMBL
SMART	IRF	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A8C2W071_CHILA	UniProtKB/TrEMBL
	A0A8C2W0P9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2YU03_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD