Pkd1l2 (polycystin 1 like 2) - Rat Genome Database
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Gene: Pkd1l2 (polycystin 1 like 2) Chinchilla lanigera
Analyze
Symbol: Pkd1l2
Name: polycystin 1 like 2
RGD ID: 9013854
Description: ASSOCIATED WITH giant axonal neuropathy 1 (ortholog); long QT syndrome (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: polycystic kidney disease 1-like 2; polycystic kidney disease protein 1-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555223,877,806 - 3,963,197 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References


Genomics

Comparative Map Data
Pkd1l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555223,877,806 - 3,963,197 (-)NCBIChiLan1.0ChiLan1.0
PKD1L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1681,100,875 - 81,220,370 (-)EnsemblGRCh38hg38GRCh38
GRCh381681,100,875 - 81,220,394 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371681,134,480 - 81,253,999 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371681,134,484 - 81,253,975 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,691,985 - 79,811,476 (-)NCBINCBI36hg18NCBI36
Build 341679,691,991 - 79,811,476NCBI
Celera1665,432,531 - 65,551,310 (-)NCBI
Cytogenetic Map16q23.2NCBI
HuRef1666,890,951 - 67,009,177 (-)NCBIHuRef
CHM1_11682,545,869 - 82,665,337 (-)NCBICHM1_1
Pkd1l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,722,089 - 117,809,227 (-)NCBIGRCm39mm39
GRCm388116,995,679 - 117,082,449 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,995,679 - 117,082,449 (-)EnsemblGRCm38mm10GRCm38
MGSCv378119,519,579 - 119,606,349 (-)NCBIGRCm37mm9NCBIm37
MGSCv368119,881,656 - 119,968,426 (-)NCBImm8
Celera8121,215,068 - 121,301,947 (-)NCBICelera
Cytogenetic Map8E1NCBI
Pkd1l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21945,049,713 - 45,136,503 (-)NCBI
Rnor_6.0 Ensembl1949,535,792 - 49,623,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01949,535,122 - 49,624,291 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01960,326,540 - 60,411,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,104,964 - 47,187,991 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1944,322,265 - 44,408,508 (-)NCBICelera
Cytogenetic Map19q12NCBI
LOC100988147
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11681,134,136 - 81,253,092 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01661,736,153 - 61,770,746 (-)NCBIMhudiblu_PPA_v0panPan3
PKD1L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl570,653,179 - 70,693,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1570,653,179 - 70,741,134 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pkd1l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647528,765,416 - 28,846,310 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PKD1L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl67,066,912 - 7,110,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.167,065,143 - 7,166,620 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PKD1L2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1566,555,686 - 66,662,670 (-)NCBI
Pkd1l2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247466,187,851 - 6,259,586 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005409357   ⟹   XP_005409414
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,877,806 - 3,963,197 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507110   ⟹   XP_013362564
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555223,877,806 - 3,963,197 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005409414 (Get FASTA)   NCBI Sequence Viewer  
  XP_013362564 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005409414   ⟸   XM_005409357
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013362564   ⟸   XM_013507110
- Peptide Label: isoform X1
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000118 ENTREZGENE
Ensembl Protein ENSCLAP00000000103 ENTREZGENE
Ensembl Transcript ENSCLAT00000000130 ENTREZGENE
NCBI Gene Pkd1l2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Pkd1l2  polycystin 1 like 2    polycystic kidney disease 1-like 2  Symbol and/or name change 5135510 APPROVED