Eomes (eomesodermin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Eomes (eomesodermin) Chinchilla lanigera
Analyze
Symbol: Eomes
Name: eomesodermin
RGD ID: 9013478
Description: ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); astrocyte differentiation (ortholog); blastocyst development (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH anxiety disorder (ortholog); autoimmune disease of the nervous system (ortholog); Colonic Neoplasms (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eomesodermin homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543019,281,602 - 19,286,867 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543019,280,460 - 19,287,060 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (ISO)
nucleus  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Eomes
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543019,281,602 - 19,286,867 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543019,280,460 - 19,287,060 (-)NCBIChiLan1.0ChiLan1.0
EOMES
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38327,715,953 - 27,722,713 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl327,715,949 - 27,722,711 (-)EnsemblGRCh38hg38GRCh38
GRCh37327,757,444 - 27,764,204 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36327,732,872 - 27,738,789 (-)NCBINCBI36Build 36hg18NCBI36
Build 34327,732,890 - 27,738,789NCBI
Celera327,694,279 - 27,700,196 (-)NCBICelera
Cytogenetic Map3p24.1NCBI
HuRef327,699,819 - 27,706,575 (-)NCBIHuRef
CHM1_1327,707,433 - 27,714,192 (-)NCBICHM1_1
T2T-CHM13v2.0327,718,036 - 27,724,801 (-)NCBIT2T-CHM13v2.0
Eomes
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399118,307,259 - 118,315,176 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9118,307,280 - 118,315,200 (+)EnsemblGRCm39 Ensembl
GRCm389118,478,186 - 118,486,132 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9118,478,212 - 118,486,132 (+)EnsemblGRCm38mm10GRCm38
MGSCv379118,387,307 - 118,395,250 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369118,327,042 - 118,334,830 (+)NCBIMGSCv36mm8
Celera9118,948,428 - 118,956,371 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map970.21NCBI
Eomes
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88127,059,215 - 127,067,070 (+)NCBIGRCr8
mRatBN7.28118,181,340 - 118,189,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8118,181,777 - 118,188,316 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.08127,144,367 - 127,152,618 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8127,144,903 - 127,151,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08126,369,713 - 126,375,233 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48123,376,689 - 123,383,451 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18123,398,873 - 123,402,528 (+)NCBI
Celera8117,369,438 - 117,374,985 (+)NCBICelera
Cytogenetic Map8q32NCBI
EOMES
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2227,660,108 - 27,667,051 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1327,664,874 - 27,671,819 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0327,601,829 - 27,608,701 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1327,923,970 - 27,930,687 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl327,925,086 - 27,930,274 (-)Ensemblpanpan1.1panPan2
EOMES
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12316,476,498 - 16,512,406 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2316,506,032 - 16,511,527 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2316,470,654 - 16,506,596 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02316,772,614 - 16,808,585 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2316,801,788 - 16,808,573 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12316,596,607 - 16,632,527 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02316,709,336 - 16,745,304 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02316,774,662 - 16,810,661 (+)NCBIUU_Cfam_GSD_1.0
Eomes
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118185,687,397 - 185,694,575 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647318,825,942 - 18,833,179 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647318,825,969 - 18,833,179 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EOMES
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1314,209,736 - 14,215,797 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11314,209,590 - 14,216,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21315,846,197 - 15,852,753 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EOMES
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11572,257,626 - 72,264,563 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604145,447,831 - 45,454,607 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eomes
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247885,550,445 - 5,557,321 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247885,550,569 - 5,557,342 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009374   ⟹   ENSCLAP00000009245
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543019,281,602 - 19,286,867 (-)Ensembl
RefSeq Acc Id: XM_005387507   ⟹   XP_005387564
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543019,280,460 - 19,287,060 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005387564 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009245
  ENSCLAP00000009245.1
Reference Protein Sequences
RefSeq Acc Id: XP_005387564   ⟸   XM_005387507
- UniProtKB: A0A8C2V5T8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009245   ⟸   ENSCLAT00000009374
Protein Domains
T-box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006436 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009374 ENTREZGENE
  ENSCLAT00000009374.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.820 UniProtKB/TrEMBL
InterPro p53-like_TF_DNA-bd UniProtKB/TrEMBL
  T-box_assoc UniProtKB/TrEMBL
  T-box_DNA-bd UniProtKB/TrEMBL
  T-box_sf UniProtKB/TrEMBL
  TF_T-box UniProtKB/TrEMBL
  TF_T-box_CS UniProtKB/TrEMBL
NCBI Gene Eomes ENTREZGENE
PANTHER EOMESODERMIN HOMOLOG UniProtKB/TrEMBL
  PTHR11267 UniProtKB/TrEMBL
Pfam T-box UniProtKB/TrEMBL
  T-box_assoc UniProtKB/TrEMBL
PRINTS TBOX UniProtKB/TrEMBL
PROSITE TBOX_1 UniProtKB/TrEMBL
  TBOX_2 UniProtKB/TrEMBL
  TBOX_3 UniProtKB/TrEMBL
SMART TBOX UniProtKB/TrEMBL
Superfamily-SCOP SSF49417 UniProtKB/TrEMBL
UniProt A0A8C2V5T8 ENTREZGENE, UniProtKB/TrEMBL