Golga2 (golgin A2) - Rat Genome Database

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Gene: Golga2 (golgin A2) Chinchilla lanigera
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Symbol: Golga2
Name: golgin A2
RGD ID: 9012848
Description: ENCODES a protein that exhibits identical protein binding (ortholog); importin-alpha family protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN asymmetric cell division (ortholog); axonogenesis (ortholog); centrosome cycle (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 31A (ortholog); Developmental Delay with Hypotonia, Myopathy, and Brain Abnormalities (ortholog); FOUND IN cis-Golgi network (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum exit site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: golgin subfamily A member 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955570782,218 - 799,044 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Golga2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955570782,218 - 799,044 (-)NCBIChiLan1.0ChiLan1.0
GOLGA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,255,829 - 128,276,007 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,255,829 - 128,276,026 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,018,108 - 131,038,286 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,057,929 - 130,078,089 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,097,662 - 128,117,822NCBI
Celera9101,669,012 - 101,689,172 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,631,562 - 100,651,722 (-)NCBIHuRef
CHM1_19131,169,131 - 131,189,291 (-)NCBICHM1_1
T2T-CHM13v2.09140,462,943 - 140,483,121 (-)NCBIT2T-CHM13v2.0
Golga2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,178,299 - 32,197,925 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,177,396 - 32,197,933 (+)EnsemblGRCm39 Ensembl
GRCm38232,288,287 - 32,307,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,287,384 - 32,307,921 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,143,773 - 32,163,441 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36232,109,393 - 32,129,930 (+)NCBIMGSCv36mm8
Celera231,992,729 - 32,012,412 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.09NCBI
Golga2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,981,783 - 36,002,023 (+)NCBIGRCr8
mRatBN7.2315,583,862 - 15,604,279 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,584,039 - 15,604,279 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,652,773 - 18,672,989 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,237,766 - 27,257,982 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,488,516 - 25,508,776 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,317,328 - 11,337,569 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,317,183 - 11,336,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,666,198 - 16,686,439 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,412,088 - 11,434,260 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1311,308,459 - 11,330,632 (+)NCBI
Celera310,328,596 - 10,348,889 (+)NCBICelera
Cytogenetic Map3p12NCBI
GOLGA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21111,077,311 - 11,096,760 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1911,079,657 - 11,099,108 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,376,847 - 99,397,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,045,805 - 128,065,200 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,047,056 - 128,065,137 (-)Ensemblpanpan1.1panPan2
GOLGA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1955,234,836 - 55,251,698 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,429,688 - 54,446,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0956,156,848 - 56,173,782 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl956,156,862 - 56,173,777 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,916,750 - 54,933,678 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0955,231,389 - 55,248,316 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0955,322,893 - 55,339,826 (+)NCBIUU_Cfam_GSD_1.0
Golga2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,030,098 - 196,045,856 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648715,798,623 - 15,814,360 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLGA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11268,702,823 - 268,721,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21302,693,900 - 302,710,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GOLGA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,852,442 - 9,873,536 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,852,461 - 9,873,767 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660796,359,761 - 6,380,755 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Golga2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247606,588,351 - 6,605,518 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005413532   ⟹   XP_005413589
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955570782,218 - 799,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509386   ⟹   XP_013364840
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955570782,218 - 799,043 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509387   ⟹   XP_013364841
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955570782,218 - 799,044 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509388   ⟹   XP_013364842
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955570782,218 - 799,042 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013509389   ⟹   XP_013364843
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955570782,218 - 799,041 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005413589   ⟸   XM_005413532
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UUY3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364841   ⟸   XM_013509387
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013364840   ⟸   XM_013509386
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UQ14 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013364842   ⟸   XM_013509388
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013364843   ⟸   XM_013509389
- Peptide Label: isoform X5
- Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002518 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003602 ENTREZGENE
  ENSCLAT00000003602.1 UniProtKB/TrEMBL
  ENSCLAT00000003603 ENTREZGENE
  ENSCLAT00000003603.1 UniProtKB/TrEMBL
InterPro GM130_C UniProtKB/TrEMBL
  GOLGA_cons_dom UniProtKB/TrEMBL
  Golgin_A UniProtKB/TrEMBL
NCBI Gene LOC102023086 ENTREZGENE
PANTHER GOLGIN SUBFAMILY A MEMBER 2 UniProtKB/TrEMBL
  PTHR10881 UniProtKB/TrEMBL
Pfam GM130_C UniProtKB/TrEMBL
  GOLGA2L5 UniProtKB/TrEMBL
UniProt A0A8C2UQ14 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UUY3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Golga2  golgin A2  LOC102023086  golgin subfamily A member 2-like  Symbol and/or name change 5135510 APPROVED