Ttc9 (tetratricopeptide repeat domain 9) - Rat Genome Database

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Gene: Ttc9 (tetratricopeptide repeat domain 9) Chinchilla lanigera
Analyze
Symbol: Ttc9
Name: tetratricopeptide repeat domain 9
RGD ID: 9012668
Description: INVOLVED IN bone development (ortholog); ASSOCIATED WITH genetic disease (ortholog); opiate dependence (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tetratricopeptide repeat protein 9A
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555234,438,674 - 4,471,049 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ttc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555234,438,674 - 4,471,049 (-)NCBIChiLan1.0ChiLan1.0
TTC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381470,641,916 - 70,675,366 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1470,641,916 - 70,675,366 (+)EnsemblGRCh38hg38GRCh38
GRCh371471,108,633 - 71,142,083 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361470,178,257 - 70,211,830 (+)NCBINCBI36Build 36hg18NCBI36
Celera1451,172,455 - 51,206,028 (+)NCBICelera
Cytogenetic Map14q24.2NCBI
HuRef1451,277,148 - 51,310,717 (+)NCBIHuRef
CHM1_11471,046,680 - 71,080,246 (+)NCBICHM1_1
T2T-CHM13v2.01464,847,902 - 64,881,350 (+)NCBIT2T-CHM13v2.0
Ttc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391281,678,023 - 81,714,331 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1281,678,023 - 81,714,331 (+)EnsemblGRCm39 Ensembl
GRCm381281,631,249 - 81,667,557 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1281,631,249 - 81,667,557 (+)EnsemblGRCm38mm10GRCm38
MGSCv371282,732,356 - 82,765,928 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361282,550,217 - 82,583,789 (+)NCBIMGSCv36mm8
Celera1283,098,495 - 83,131,977 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1237.85NCBI
Ttc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86107,064,527 - 107,099,361 (+)NCBIGRCr8
mRatBN7.26101,333,274 - 101,368,110 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6101,333,141 - 101,368,110 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6101,484,199 - 101,519,018 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06101,783,388 - 101,818,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06101,154,399 - 101,189,235 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06105,364,668 - 105,399,500 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6105,364,668 - 105,399,500 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06113,510,835 - 113,545,667 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46105,495,936 - 105,530,999 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera699,168,031 - 99,202,888 (+)NCBICelera
Cytogenetic Map6q24NCBI
TTC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21571,760,138 - 71,793,953 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11470,976,652 - 71,010,466 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01451,229,734 - 51,262,455 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11470,100,391 - 70,132,551 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1470,100,391 - 70,130,915 (+)Ensemblpanpan1.1panPan2
TTC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1844,358,130 - 44,392,062 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl844,357,641 - 44,387,737 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha844,021,651 - 44,055,504 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0844,580,694 - 44,614,521 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl844,580,694 - 44,613,616 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1844,234,500 - 44,274,511 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0844,279,640 - 44,313,502 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0844,640,561 - 44,674,646 (+)NCBIUU_Cfam_GSD_1.0
Ttc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864031,757,305 - 31,796,572 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936488302,502 - 311,483 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl794,218,649 - 94,254,730 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1794,218,436 - 94,254,472 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27100,537,831 - 100,574,711 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12447,845,463 - 47,878,891 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2447,846,449 - 47,877,325 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605336,067,908 - 36,102,438 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473430,532,480 - 30,559,914 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473430,503,322 - 30,560,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013507122   ⟹   XP_013362576
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555234,438,674 - 4,471,049 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013362576 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_013362576   ⟸   XM_013507122
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC102017694 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Ttc9  tetratricopeptide repeat domain 9  LOC102017694  uncharacterized LOC102017694  Symbol and/or name change 5135510 APPROVED