Birc3 (baculoviral IAP repeat containing 3) - Rat Genome Database

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Gene: Birc3 (baculoviral IAP repeat containing 3) Chinchilla lanigera
Analyze
Symbol: Birc3
Name: baculoviral IAP repeat containing 3
RGD ID: 9012523
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); transferase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); necroptotic process (ortholog); negative regulation of necroptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); Alcoholic Fatty Liver (ortholog); asphyxiating thoracic dystrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane raft (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: baculoviral IAP repeat-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554125,628,973 - 5,643,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554125,624,865 - 5,643,520 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Birc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554125,628,973 - 5,643,410 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554125,624,865 - 5,643,520 (+)NCBIChiLan1.0ChiLan1.0
BIRC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811102,317,484 - 102,339,403 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11102,317,450 - 102,339,403 (+)EnsemblGRCh38hg38GRCh38
GRCh3711102,188,215 - 102,210,134 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611101,693,404 - 101,713,675 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411101,693,403 - 101,713,674NCBI
Celera1199,349,739 - 99,370,012 (+)NCBICelera
Cytogenetic Map11q22.2NCBI
HuRef1198,114,738 - 98,136,703 (+)NCBIHuRef
CHM1_111102,071,142 - 102,093,097 (+)NCBICHM1_1
T2T-CHM13v2.011102,319,603 - 102,341,520 (+)NCBIT2T-CHM13v2.0
Birc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3997,848,698 - 7,873,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl97,848,700 - 7,873,187 (-)EnsemblGRCm39 Ensembl
GRCm3897,847,468 - 7,873,205 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl97,848,699 - 7,873,186 (-)EnsemblGRCm38mm10GRCm38
MGSCv3797,848,699 - 7,873,170 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3697,849,220 - 7,873,545 (-)NCBIMGSCv36mm8
Celera95,240,413 - 5,264,652 (-)NCBICelera
Cytogenetic Map9A1NCBI
Birc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.285,000,844 - 5,028,470 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl85,000,845 - 5,015,802 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx88,960,993 - 8,975,854 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.087,258,675 - 7,273,532 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.085,260,542 - 5,275,505 (-)NCBIRnor_WKY
Rnor_6.086,048,590 - 6,076,828 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl86,048,969 - 6,076,598 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.086,047,454 - 6,075,236 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.484,682,202 - 4,696,856 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.184,682,202 - 4,696,856 (-)NCBI
Celera86,558,921 - 6,573,882 (-)NCBICelera
Cytogenetic Map8q11NCBI
BIRC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111100,763,274 - 100,785,194 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11100,763,274 - 100,785,194 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01197,269,778 - 97,290,112 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BIRC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1529,324,893 - 29,343,322 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl529,325,331 - 29,337,240 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha529,274,261 - 29,286,176 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0529,377,538 - 29,396,454 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl529,377,570 - 29,395,969 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1529,434,557 - 29,446,661 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0529,292,001 - 29,303,913 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0529,466,940 - 29,478,850 (-)NCBIUU_Cfam_GSD_1.0
Birc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494785,977,221 - 85,992,462 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365515,544,065 - 5,556,555 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365515,544,047 - 5,556,550 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIRC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl933,003,276 - 33,020,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1933,003,570 - 33,020,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2936,951,995 - 36,969,108 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BIRC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1193,692,239 - 93,711,905 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604332,150,453 - 32,171,737 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Birc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624878523,300 - 536,062 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624878516,750 - 541,475 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015854   ⟹   ENSCLAP00000015692
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554125,628,973 - 5,643,410 (+)Ensembl
RefSeq Acc Id: XM_005377975   ⟹   XP_005378032
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554125,628,220 - 5,643,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511018   ⟹   XP_013366472
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554125,624,865 - 5,643,520 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511019   ⟹   XP_013366473
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554125,628,220 - 5,643,520 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378032 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366472 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366473 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005378032   ⟸   XM_005377975
- UniProtKB: A0A8C2VJQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366472   ⟸   XM_013511018
- UniProtKB: A0A8C2VJQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366473   ⟸   XM_013511019
- UniProtKB: A0A8C2VJQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015692   ⟸   ENSCLAT00000015854
Protein Domains
CARD   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000015692 ENTREZGENE
  ENSCLAP00000015692.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015854 ENTREZGENE
  ENSCLAT00000015854.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
InterPro BIR_rpt UniProtKB/TrEMBL
  BIRC2/BIRC3_UBA UniProtKB/TrEMBL
  CARD UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
NCBI Gene Birc3 ENTREZGENE
Pfam BIR UniProtKB/TrEMBL
  CARD UniProtKB/TrEMBL
PROSITE BIR_REPEAT_1 UniProtKB/TrEMBL
  BIR_REPEAT_2 UniProtKB/TrEMBL
  CARD UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BIR UniProtKB/TrEMBL
  CARD UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
UniProt A0A8C2VJQ7 ENTREZGENE, UniProtKB/TrEMBL