Slc46a2 (solute carrier family 46 member 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Slc46a2 (solute carrier family 46 member 2) Chinchilla lanigera
Analyze
Symbol: Slc46a2
Name: solute carrier family 46 member 2
RGD ID: 9012331
Description: ENCODES a protein that exhibits cyclic-GMP-AMP transmembrane transporter activity (ortholog); INVOLVED IN cyclic-GMP-AMP transmembrane import across plasma membrane (ortholog); negative regulation of T cell apoptotic process (ortholog); positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 46, member 2; thymic stromal cotransporter homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,547,103 - 14,557,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,547,393 - 14,557,447 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc46a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,547,103 - 14,557,531 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,547,393 - 14,557,447 (+)NCBIChiLan1.0ChiLan1.0
SLC46A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389112,878,920 - 112,890,876 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9112,878,920 - 112,890,876 (-)EnsemblGRCh38hg38GRCh38
GRCh379115,641,200 - 115,653,156 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369114,681,021 - 114,692,866 (-)NCBINCBI36Build 36hg18NCBI36
Build 349112,720,755 - 112,732,600NCBI
Celera986,314,093 - 86,326,088 (+)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,239,036 - 85,251,012 (-)NCBIHuRef
CHM1_19115,788,488 - 115,800,474 (-)NCBICHM1_1
T2T-CHM13v2.09125,050,362 - 125,072,489 (-)NCBIT2T-CHM13v2.0
Slc46a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,905,899 - 59,915,056 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl459,905,126 - 59,915,056 (-)EnsemblGRCm39 Ensembl
GRCm38459,905,899 - 59,915,056 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,905,126 - 59,915,056 (-)EnsemblGRCm38mm10GRCm38
MGSCv37459,918,771 - 59,927,928 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36459,999,180 - 60,009,110 (-)NCBIMGSCv36mm8
Celera459,822,589 - 59,831,770 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map432.81NCBI
Slc46a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8579,594,003 - 79,603,074 (-)NCBIGRCr8
mRatBN7.2574,800,226 - 74,808,128 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl574,800,226 - 74,808,128 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx576,700,364 - 76,708,304 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0578,521,999 - 78,529,935 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0578,494,162 - 78,502,102 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0577,165,463 - 77,174,177 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl577,165,598 - 77,173,502 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0581,300,022 - 81,307,920 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4578,044,714 - 78,052,612 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1578,043,262 - 78,057,672 (-)NCBI
Celera573,609,789 - 73,617,699 (-)NCBICelera
Cytogenetic Map5q24NCBI
SLC46A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,549,345 - 26,561,525 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,551,704 - 26,563,884 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,001,056 - 84,013,231 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,154,001 - 112,165,906 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,154,001 - 112,165,906 (-)Ensemblpanpan1.1panPan2
SLC46A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,297,596 - 67,305,893 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,297,597 - 67,305,893 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,704,288 - 65,712,588 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,423,487 - 68,431,777 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,423,488 - 68,431,777 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11166,939,761 - 66,948,049 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01166,962,952 - 66,971,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01167,707,572 - 67,715,860 (-)NCBIUU_Cfam_GSD_1.0
Slc46a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,586,765 - 182,596,316 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559670,231 - 679,766 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559670,239 - 674,061 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC46A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,559,546 - 253,570,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,559,545 - 253,571,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,368,646 - 284,379,213 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC46A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,631,295 - 26,646,112 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,633,493 - 26,646,038 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,145,372 - 16,158,151 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc46a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476022,124,321 - 22,134,906 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476022,124,321 - 22,134,601 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000016757   ⟹   ENSCLAP00000016593
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541914,547,103 - 14,557,531 (+)Ensembl
RefSeq Acc Id: XM_005382700   ⟹   XP_005382757
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541914,547,393 - 14,557,447 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005382757 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000016593
  ENSCLAP00000016593.1
RefSeq Acc Id: XP_005382757   ⟸   XM_005382700
- UniProtKB: A0A8C2VRB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000016593   ⟸   ENSCLAT00000016757


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011399 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016757 ENTREZGENE
  ENSCLAT00000016757.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Tet-R_TetA/multi-R_MdtG UniProtKB/TrEMBL
NCBI Gene Slc46a2 ENTREZGENE
PANTHER THYMIC STROMAL COTRANSPORTER HOMOLOG UniProtKB/TrEMBL
  ZGC:174356 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PRINTS TCRTETA UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/TrEMBL
UniProt A0A8C2VRB2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Slc46a2  solute carrier family 46 member 2    solute carrier family 46, member 2  Symbol and/or name change 5135510 APPROVED