Pebp4 (phosphatidylethanolamine binding protein 4)

Gene: Pebp4 (phosphatidylethanolamine binding protein 4) Chinchilla lanigera

Analyze

Symbol:

Pebp4

Name:

phosphatidylethanolamine binding protein 4

RGD ID:

9011810

Description:

ASSOCIATED WITH Conotruncal Cardiac Defects (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

phosphatidylethanolamine-binding protein 4

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	46,125,150 - 46,333,200 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	46,126,263 - 46,317,830 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Conotruncal Cardiac Defects (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Pebp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	46,125,150 - 46,333,200 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	46,126,263 - 46,317,830 (-)	NCBI	ChiLan1.0	ChiLan1.0

PEBP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	22,713,251 - 22,941,077 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	22,713,251 - 23,000,000 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	22,570,764 - 22,798,590 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	22,626,710 - 22,841,366 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	21,533,122 - 21,747,804 (-)	NCBI		Celera
Cytogenetic Map	8	p21.3	NCBI
HuRef	8	21,113,907 - 21,329,903 (-)	NCBI		HuRef
CHM1_1	8	22,773,101 - 22,987,671 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	22,987,819 - 23,216,048 (-)	NCBI		T2T-CHM13v2.0

Pebp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	70,077,856 - 70,297,367 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	70,077,869 - 70,297,367 (+)	Ensembl		GRCm39 Ensembl
GRCm38	14	69,840,407 - 70,059,918 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	69,840,420 - 70,059,918 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	70,240,227 - 70,459,693 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	68,575,487 - 68,794,959 (+)	NCBI		MGSCv36	mm8
Celera	14	67,378,541 - 67,600,399 (+)	NCBI		Celera
Cytogenetic Map	14	D2	NCBI
cM Map	14	36.1	NCBI

Pebp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	51,328,127 - 51,543,920 (+)	NCBI		GRCr8
mRatBN7.2	15	44,920,946 - 45,134,188 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	44,921,886 - 45,134,191 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	51,644,948 - 51,740,626 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0	15	51,528,587 - 51,615,204 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	51,528,514 - 51,740,281 (+)	NCBI	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	55,252,902 - 55,466,149 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	50,225,405 - 50,460,627 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	15	44,602,584 - 44,814,601 (+)	NCBI		Celera
Cytogenetic Map	15	p11	NCBI

PEBP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	41,218,356 - 41,505,203 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	16,945,744 - 17,232,411 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	21,963,297 - 22,250,024 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	18,902,616 - 19,117,229 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	18,902,734 - 19,117,025 (-)	Ensembl	panpan1.1		panPan2

PEBP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	34,329,160 - 34,574,086 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	34,317,421 - 34,574,066 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	34,917,144 - 35,164,286 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	34,536,708 - 34,784,007 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	34,535,120 - 34,784,085 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	34,483,438 - 34,730,274 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	34,337,758 - 34,584,606 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	34,492,754 - 34,740,068 (+)	NCBI		UU_Cfam_GSD_1.0

Pebp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	11,922,656 - 12,137,275 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936555	6,433,237 - 6,620,072 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936555	6,433,243 - 6,648,014 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PEBP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	6,966,862 - 7,173,347 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	6,966,861 - 7,173,255 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	7,446,928 - 7,543,617 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	14	7,691,260 - 7,698,221 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PEBP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	20,792,718 - 21,066,746 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	20,792,707 - 21,004,134 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666052	21,223,048 - 21,434,545 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pebp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624758	18,203,239 - 18,394,891 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005373691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013513921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01002850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01002855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01102343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000022267 ⟹ ENSCLAP00000022063

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955403	46,125,150 - 46,333,200 (-)	Ensembl

RefSeq Acc Id:

XM_005373691 ⟹ XP_005373748

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	46,126,263 - 46,317,830 (-)	NCBI

Sequence:

show sequence

ATTCCGCCCTCTCCTATGCTGGTTGGTCACTCTGTTCAACCACATCCACCTTCAGACAGCCCAG
AGGCTGTGGAGACAAGTGGTCTTGGAGGACCTGGGGGTGTGAGAGGCAGAGGTCTCGCACAAGG
CCCAGCCAAAGCTGCCGTCCCCTCCCTGCCCTGTGCCTGGGATCCCCAGCCCCCCAGAGTAGGC
CCGAAAGCTGCACTGCCGGCTCCTGTGCCCACAAACGGGACAATGAGGCTGGTTGCAGCAGCCT
TGTGGCTGGGTTTCCTGATGGTGGCCCCGGGAGACAGTGAAGACTCCTGTGTCTATGAGCCGCT
GTCCGATGAAGACACCATGATATGCAAGGGCCTTGAAGTTCTCTACCCTGAGCTGGGGAACATC
GGCTGCATGTTCATTCCAGACTGCAACAACTACAGACAGAAGATCACCCAGTGGACCAAGCCCA
TAGTCAAGTTCTCTGGCGCCTTGGACGATAGAAAGTACATCCTGGTGATGGTGGATCCGGATGC
TCCCAGCAGGTACAATCCCACAGCAAGATTCTGGAGACATTGGCTAGTGACAGATATCCAGGGT
ACCGACTTGAAGAGAGGGAAGATTAAAGGCCAGGAGTTATCAGCCTACCAGCCTCCCTCCCCAC
CAGCTCACAGTGGCTTCCACCGCTACCAATTCTACATCTACCGTCAGGAAGTAAAGACCATCAA
CCTCCTTCCCAAAGAAAACAGAACTCGAGGCTCTTGGGAAATGGACAAATTTTTGTACCGCTTC
CACCTGAAGGAGCCTGAAGCAAGCACCCAGTTCATGATGCAGAACTACCAGGACTCGACAACGT
TCCAAGCTTCCAGGGAAGGTGGCTTCTAGGCCAAGGACAAACCCAGAGAGAACTGCCTGCTGGG
CTGCAGGCTTCACCTTCCAGGTGTGTGTCCACAACAGTCTGGGGACAGGATCCTTTGTGGGTAT
GGATACCTTCTCATCCAAATTACAAAAAAAAAATAAAAATAAGAGGTCATCCA

hide sequence

RefSeq Acc Id:

XM_013513921 ⟹ XP_013369375

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955403	46,126,263 - 46,317,830 (-)	NCBI

Sequence:

show sequence

ATTCCGCCCTCTCCTATGCTGGTTGGTCACTCTGTTCAACCACATCCACCTTCAGACAGCCCAG
AGGCTGTGGAGACAAGTGGTCTTGGAGGACCTGGGGGTGTGAGAGGCAGAGGTCTCGCACAAGG
CCCAGCCAAAGCTGCCGTCCCCTCCCTGCCCTGTGCCTGGGATCCCCAGCCCCCCAGAGTAGGC
CCGAAAGCTGCACTGCCGGCTCCTGTGCCCACAAACGGGACAATGAGGCTGGTTGCAGCAGCCT
TGTGGCTGGGTTTCCTGATGGTGGCCCCGGGAGACAGTGAAGACTCCTGTGTCTATGAGCCGCT
GTCCGATGAAGACACCATGATATGCAATAGGGGCCTTGAAGTTCTCTACCCTGAGCTGGGGAAC
ATCGGCTGCATGTTCATTCCAGACTGCAACAACTACAGACAGAAGATCACCCAGTGGACCAAGC
CCATAGTCAAGTTCTCTGGCGCCTTGGACGATAGAAAGTACATCCTGGTGATGGTGGATCCGGA
TGCTCCCAGCAGGTACAATCCCACAGCAAGATTCTGGAGACATTGGCTAGTGACAGATATCCAG
GGTACCGACTTGAAGAGAGGGAAGATTAAAGGCCAGGAGTTATCAGCCTACCAGCCTCCCTCCC
CACCAGCTCACAGTGGCTTCCACCGCTACCAATTCTACATCTACCGTCAGGAAGTAAAGACCAT
CAACCTCCTTCCCAAAGAAAACAGAACTCGAGGCTCTTGGGAAATGGACAAATTTTTGTACCGC
TTCCACCTGAAGGAGCCTGAAGCAAGCACCCAGTTCATGATGCAGAACTACCAGGACTCGACAA
CGTTCCAAGCTTCCAGGGAAGGTGGCTTCTAGGCCAAGGACAAACCCAGAGAGAACTGCCTGCT
GGGCTGCAGGCTTCACCTTCCAGGTGTGTGTCCACAACAGTCTGGGGACAGGATCCTTTGTGGG
TATGGATACCTTCTCATCCAAATTACAAAAAAAAAATAAAAATAAGAGGTCATCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005373748	(Get FASTA)	NCBI Sequence Viewer
	XP_013369375	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022063.1

RefSeq Acc Id:

XP_005373748 ⟸ XM_005373691

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLVGHSVQPHPPSDSPEAVETSGLGGPGGVRGRGLAQGPAKAAVPSLPCAWDPQPPRVGPKAAL
PAPVPTNGTMRLVAAALWLGFLMVAPGDSEDSCVYEPLSDEDTMICKGLEVLYPELGNIGCMFI
PDCNNYRQKITQWTKPIVKFSGALDDRKYILVMVDPDAPSRYNPTARFWRHWLVTDIQGTDLKR
GKIKGQELSAYQPPSPPAHSGFHRYQFYIYRQEVKTINLLPKENRTRGSWEMDKFLYRFHLKEP
EASTQFMMQNYQDSTTFQASREGGF

hide sequence

RefSeq Acc Id:

XP_013369375 ⟸ XM_013513921

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLVGHSVQPHPPSDSPEAVETSGLGGPGGVRGRGLAQGPAKAAVPSLPCAWDPQPPRVGPKAAL
PAPVPTNGTMRLVAAALWLGFLMVAPGDSEDSCVYEPLSDEDTMICNRGLEVLYPELGNIGCMF
IPDCNNYRQKITQWTKPIVKFSGALDDRKYILVMVDPDAPSRYNPTARFWRHWLVTDIQGTDLK
RGKIKGQELSAYQPPSPPAHSGFHRYQFYIYRQEVKTINLLPKENRTRGSWEMDKFLYRFHLKE
PEASTQFMMQNYQDSTTFQASREGGF

hide sequence

RefSeq Acc Id:

ENSCLAP00000022063 ⟸ ENSCLAT00000022267

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015116	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000022267.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.280.10	UniProtKB/TrEMBL
InterPro	PEBP	UniProtKB/TrEMBL
	PEBP-like_sf	UniProtKB/TrEMBL
	PEBP_euk	UniProtKB/TrEMBL
	Phosphatidylethanolamine-bd_CS	UniProtKB/TrEMBL
NCBI Gene	Pebp4	ENTREZGENE
PANTHER	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 4	UniProtKB/TrEMBL
	PTHR11362	UniProtKB/TrEMBL
Pfam	PBP	UniProtKB/TrEMBL
PROSITE	PBP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49777	UniProtKB/TrEMBL
UniProt	A0A8C2VXE8_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Pebp4	phosphatidylethanolamine binding protein 4		phosphatidylethanolamine-binding protein 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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