Cd7 (CD7 molecule) - Rat Genome Database

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Gene: Cd7 (CD7 molecule) Chinchilla lanigera
Analyze
Symbol: Cd7
Name: CD7 molecule
RGD ID: 9009691
Description: INVOLVED IN homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell antigen CD7
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955506863,188 - 865,857 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cd7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955506863,188 - 865,857 (+)NCBIChiLan1.0ChiLan1.0
CD7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,314,873 - 82,317,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,314,868 - 82,317,608 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,272,749 - 80,275,484 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,866,035 - 77,868,769 (-)NCBINCBI36Build 36hg18NCBI36
Build 341777,866,034 - 77,868,741NCBI
Celera1776,866,247 - 76,868,981 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,671,526 - 75,674,260 (-)NCBIHuRef
CHM1_11780,358,937 - 80,361,671 (-)NCBICHM1_1
T2T-CHM13v2.01783,183,628 - 83,186,371 (-)NCBIT2T-CHM13v2.0
Cd7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,927,573 - 120,930,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,927,573 - 120,930,244 (-)EnsemblGRCm39 Ensembl
GRCm3811121,036,747 - 121,039,478 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,036,747 - 121,039,418 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711120,898,065 - 120,900,732 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611120,852,841 - 120,855,508 (-)NCBIMGSCv36mm8
Celera11132,774,570 - 132,777,237 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1184.85NCBI
Cd7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,802,373 - 106,805,269 (-)NCBIGRCr8
mRatBN7.210106,304,046 - 106,306,963 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,304,056 - 106,306,967 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,408,009 - 111,410,884 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010110,871,055 - 110,873,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,224,502 - 106,227,383 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,229,931 - 110,232,812 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,229,922 - 110,232,843 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,817,145 - 109,820,026 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,250,174 - 110,253,055 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,264,677 - 110,267,530 (-)NCBI
Celera10104,842,923 - 104,845,804 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
CD7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,854,344 - 98,857,132 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,755,991 - 103,759,691 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,724,313 - 76,727,998 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,535,101 - 82,537,956 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,535,558 - 82,537,847 (-)Ensemblpanpan1.1panPan2
CD7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1945,826 - 48,864 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl945,634 - 48,749 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha9647,579 - 650,430 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09638,953 - 641,804 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9638,289 - 641,689 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19633,434 - 636,285 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09793,930 - 796,781 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09869,018 - 871,869 (+)NCBIUU_Cfam_GSD_1.0
Cd7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602632,473 - 634,782 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365945,777,361 - 5,783,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.112740,345 - 744,876 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103243765
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,234,604 - 74,237,479 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,234,611 - 74,237,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607745,874,429 - 45,877,444 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480111,108,032 - 11,112,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005407205   ⟹   XP_005407262
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955506863,188 - 865,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005407206   ⟹   XP_005407263
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955506863,188 - 865,857 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407262 (Get FASTA)   NCBI Sequence Viewer  
  XP_005407263 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017329.1
Reference Protein Sequences
RefSeq Acc Id: XP_005407262   ⟸   XM_005407205
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005407263   ⟸   XM_005407206
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011900 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017498.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD7 UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene Cd7 ENTREZGENE
PANTHER PTHR15343 UniProtKB/TrEMBL
  T-CELL ANTIGEN CD7 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C2VL97_CHILA UniProtKB/TrEMBL