Tgds (TDP-glucose 4,6-dehydratase) - Rat Genome Database

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Gene: Tgds (TDP-glucose 4,6-dehydratase) Chinchilla lanigera
Analyze
Symbol: Tgds
Name: TDP-glucose 4,6-dehydratase
RGD ID: 9009240
Description: ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); Catel Manzke syndrome (ortholog); Congenital Microcoria (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dTDP-D-glucose 4,6-dehydratase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,279,866 - 15,298,295 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,279,956 - 15,298,295 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Tgds
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540415,279,866 - 15,298,295 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540415,279,956 - 15,298,295 (+)NCBIChiLan1.0ChiLan1.0
TGDS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381394,574,054 - 94,596,273 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1394,574,054 - 94,596,242 (-)EnsemblGRCh38hg38GRCh38
GRCh371395,226,308 - 95,248,406 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,024,309 - 94,046,512 (-)NCBINCBI36hg18NCBI36
Build 341394,024,276 - 94,046,484NCBI
Celera1376,074,266 - 76,096,482 (-)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1375,823,580 - 75,845,722 (-)NCBIHuRef
CHM1_11395,195,749 - 95,217,972 (-)NCBICHM1_1
T2T-CHM13v2.01393,777,561 - 93,799,659 (-)NCBI
Tgds
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914118,349,323 - 118,370,177 (-)NCBIGRCm39mm39
GRCm39 Ensembl14118,349,323 - 118,370,167 (-)Ensembl
GRCm3814118,111,911 - 118,132,765 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,111,911 - 118,132,755 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714118,511,133 - 118,531,987 (-)NCBIGRCm37mm9NCBIm37
MGSCv3614116,994,822 - 117,015,076 (-)NCBImm8
Celera14116,666,336 - 116,687,188 (-)NCBICelera
Cytogenetic Map14E4NCBI
Tgds
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,174,607 - 95,195,577 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,174,608 - 95,195,554 (-)Ensembl
Rnor_6.015103,319,268 - 103,340,239 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15103,319,268 - 103,340,240 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015106,757,794 - 106,778,765 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415102,906,505 - 102,927,476 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115102,886,389 - 102,947,401 (-)NCBI
Celera1594,026,655 - 94,047,623 (-)NCBICelera
Cytogenetic Map15q24NCBI
TGDS
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11394,903,511 - 94,925,637 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1394,903,511 - 94,925,637 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01375,747,686 - 75,770,010 (-)NCBIMhudiblu_PPA_v0panPan3
TGDS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12245,384,119 - 45,400,128 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2245,384,412 - 45,400,314 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,170,937 - 45,186,953 (-)NCBI
ROS_Cfam_1.02245,814,910 - 45,831,319 (-)NCBI
ROS_Cfam_1.0 Ensembl2245,814,910 - 45,831,337 (-)Ensembl
UMICH_Zoey_3.12245,468,436 - 45,484,465 (-)NCBI
UNSW_CanFamBas_1.02245,509,305 - 45,525,339 (-)NCBI
UU_Cfam_GSD_1.02245,518,896 - 45,534,916 (-)NCBI
Tgds
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945180,932,345 - 180,958,550 (-)NCBI
SpeTri2.0NW_00493647214,993,579 - 15,016,270 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TGDS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,695,638 - 63,716,568 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,695,612 - 63,716,614 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21169,863,218 - 69,884,205 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TGDS
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1373,403,520 - 73,424,985 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl373,400,485 - 73,424,892 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604629,788,007 - 29,814,614 (-)NCBIVero_WHO_p1.0
Tgds
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248791,366,151 - 1,384,601 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248791,365,464 - 1,384,726 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000004351   ⟹   ENSCLAP00000004269
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540415,279,866 - 15,298,295 (+)Ensembl
RefSeq Acc Id: XM_005374111   ⟹   XP_005374168
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,279,957 - 15,298,295 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374112   ⟹   XP_005374169
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,279,957 - 15,298,295 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005374113   ⟹   XP_005374170
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,279,956 - 15,298,295 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516287   ⟹   XP_013371741
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540415,280,019 - 15,298,295 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374168 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374169 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374170 (Get FASTA)   NCBI Sequence Viewer  
  XP_013371741 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374168   ⟸   XM_005374111
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005374169   ⟸   XM_005374112
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005374170   ⟸   XM_005374113
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013371741   ⟸   XM_013516287
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000004269   ⟸   ENSCLAT00000004351
Protein Domains
NAD(P)-bd_dom


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003039 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000004269 ENTREZGENE
  ENSCLAP00000004269.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004351 ENTREZGENE
  ENSCLAT00000004351.1 UniProtKB/TrEMBL
InterPro dTDP_Gluc_deHydtase UniProtKB/TrEMBL
  NAD(P)-bd_dom UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene Tgds ENTREZGENE
Pfam GDP_Man_Dehyd UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A8C2URT0_CHILA UniProtKB/TrEMBL