Nol12 (nucleolar protein 12) - Rat Genome Database

Name: Nol12
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Nol12 (nucleolar protein 12) Chinchilla lanigera

Analyze

Symbol:

Nol12

Name:

nucleolar protein 12

RGD ID:

9008720

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); rRNA binding (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NOL12 (nucleolar protein 12)	NCBI	Ortholog
Mus musculus (house mouse):	Nol12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nol12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NOL12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NOL12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nol12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NOL12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NOL12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nol12 (nucleolar protein 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	24,078,349 - 24,086,210 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	24,079,183 - 24,085,008 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenylosuccinase lyase deficiency (ISO)

Emery-Dreifuss muscular dystrophy (ISO)

genetic disease (ISO)

myoclonic dystonia 26 (ISO)

neurodegeneration with brain iron accumulation 2A (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleolus (ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

RNA binding (ISO)

rRNA binding (ISO)

single-stranded DNA binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Nol12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	24,078,349 - 24,086,210 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	24,079,183 - 24,085,008 (+)	NCBI	ChiLan1.0	ChiLan1.0

NOL12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	37,686,343 - 37,693,474 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	37,681,673 - 37,693,476 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	38,082,350 - 38,089,481 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	36,412,290 - 36,419,431 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	21,884,194 - 21,891,313 (+)	NCBI		Celera
Cytogenetic Map	22	q13.1	NCBI
HuRef	22	21,049,249 - 21,056,388 (+)	NCBI		HuRef
CHM1_1	22	38,041,049 - 38,048,189 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	38,147,595 - 38,154,723 (+)	NCBI		T2T-CHM13v2.0

Nol12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	78,819,151 - 78,826,111 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	78,819,133 - 78,827,838 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	78,934,933 - 78,941,910 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	78,934,933 - 78,943,638 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	78,765,363 - 78,772,340 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	78,762,188 - 78,769,165 (+)	NCBI		MGSCv36	mm8
MGSCv36	15	79,659,053 - 79,666,030 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	15	E1	NCBI
cM Map	15	37.7	NCBI

Nol12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	112,373,749 - 112,379,362 (+)	NCBI		GRCr8
mRatBN7.2	7	110,493,294 - 110,498,908 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	110,493,246 - 110,498,907 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	112,242,810 - 112,248,435 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	114,466,330 - 114,471,955 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	114,434,940 - 114,440,549 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	120,161,238 - 120,166,852 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	120,161,091 - 120,167,020 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	120,152,929 - 120,158,543 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	116,901,716 - 116,907,329 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	116,935,967 - 116,941,303 (+)	NCBI
Celera	7	106,827,427 - 106,833,040 (+)	NCBI		Celera
Cytogenetic Map	7	q34	NCBI

NOL12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	47,546,554 - 47,553,712 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	50,235,152 - 50,242,310 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	18,603,990 - 18,611,060 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	36,436,402 - 36,443,662 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	36,436,402 - 36,443,662 (+)	Ensembl	panpan1.1		panPan2

NOL12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	26,919,771 - 26,926,547 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	26,875,094 - 26,881,204 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	27,712,281 - 27,718,391 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	27,713,066 - 27,718,378 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	27,434,611 - 27,440,715 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	27,743,444 - 27,749,557 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	27,920,691 - 27,926,803 (-)	NCBI		UU_Cfam_GSD_1.0

Nol12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	10,387,262 - 10,393,219 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	3,397,121 - 3,404,212 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	3,397,676 - 3,404,116 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NOL12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	10,137,362 - 10,144,140 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	10,137,362 - 10,144,156 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	7,630,612 - 7,637,410 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NOL12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	20,386,709 - 20,395,325 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	20,386,723 - 20,394,897 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	105,428,134 - 105,433,441 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nol12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	10,190,769 - 10,197,808 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	10,191,778 - 10,197,856 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005379221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01014347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01132569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024679 ⟹ ENSCLAP00000024444

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955413	24,078,349 - 24,086,210 (+)	Ensembl

RefSeq Acc Id:

XM_005379221 ⟹ XP_005379278

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955413	24,079,183 - 24,085,008 (+)	NCBI

Sequence:

show sequence

GGCTGTGGGGGCTACACCCGGAAGTCTCTTAGGCAATAGGGAGCCGCACCGCCGGAAGCTTCGC
TACTATGGGCCGAAACAAGAAGAAAAAACGAGATGGTAACGACCGGCCCCGGCTCGTCCTCAGC
TTCGATGAAGAGAAGAGGCGGGAGTACCTGACCGGCTTCCACAAGCGGAAGGTGGAGCGGAAGA
AGGCGGCCATCAAGGAGATTAAGCAGCGGCTGAAGGAGGAGCAGAAGAAGCTCCGGGAGGAGCG
CCACCAGGAGTACTTGAAGATGCTGGCAGAGAGAGAGGAGGCGCTGGAGGAAGCAGATGAGCTG
GACCGGCTGGTGACGGCCAAGACCGAGTCAGTACAGTACGACCACCCCAACCACACGGTCACTG
TGACCACCATCAGCGACCTGGACCTCTCAGGGGCCCGGCTGCTTGGATTGCCACAGCCTGAGCA
AGGCGCCGAGGACCAGTCCAAGGAGGAGGAGGCGTCCGTGGAGAAGTCCACCAAGGCCTTACCC
AGGAAATCCAAAGAGCCCCTGCTGTCTCAGCGGATCTCCAACCTCACGGCATCCCTGCACGCGC
ACAGCCGCAAAAAGGTGAAGAGGAAGTGTCCTCGGCGGGCCCACGACTCCACCAAGAAGCCCCC
GAGCACCACCCGCACCAGCAAGACCCAGCGCCGCCGACTGACAGGCCGGGCGCACCACAGCGGG
GAGTGAGCCCGGAGGCCCAGGGCTGCCGCAGCGTGGCTGTGCTGTAACCCAGCCACATGAGGTG
GTGACCCCATGGCCTAGGCTCGGGAACCCAGGACCTCTTGGTCCTAGACTGTTGCCATCTGTGC
CCAGGGCCACCTGGGTGCGAACCCCTGAAGGGGAGGGCCCCAGAGAAGCCAGCAGAATCAGCTT
GGTGTCTCCCCTAGTGAACCCCGCCAGGGATGCATCGCATATGCGTGCATGTGGTTTGTTTGTC
CTTCCCTTGACACCACGTACCACAGGGAGGCTCTGGGTGGTAGAAATGTCAGGGCTGAGGGTCC
CTCCACCTCCAGCAGTGTCCCTGAGGGGACAGGGAGGTCGTGTAGGGACCCAGAGTTCACCTGC
TCCCTGGAGAGCCGGCAGCTGGGCACGGCAGGCACAGAACACACAACCTCTGGGCCTGGCCTCG
CAGCTCTGGCCCTTCTGCCCCTGCCACCTCCCTGTCCTCTCCTCAGTGTCAGCAAGATGACACG
AGAGGCTGAGGTGAGACCCCGTGTGGCAGCCACCTCCTACAGCGCTGGGACCTCTGGCCACACC
CCTCCCTGACTCTCCAGTGTCACTTAACGGACGTTGGGGCTGTCGTGTTAATAAATCTCATCCA
CTCCTCCTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005379278	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024444
	ENSCLAP00000024444.1

RefSeq Acc Id:

XP_005379278 ⟸ XM_005379221

- UniProtKB:

A0A8C2W7Z3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGRNKKKKRDGNDRPRLVLSFDEEKRREYLTGFHKRKVERKKAAIKEIKQRLKEEQKKLREERH
QEYLKMLAEREEALEEADELDRLVTAKTESVQYDHPNHTVTVTTISDLDLSGARLLGLPQPEQG
AEDQSKEEEASVEKSTKALPRKSKEPLLSQRISNLTASLHAHSRKKVKRKCPRRAHDSTKKPPS
TTRTSKTQRRRLTGRAHHSGE

hide sequence

RefSeq Acc Id:

ENSCLAP00000024444 ⟸ ENSCLAT00000024679

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016784	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024679	ENTREZGENE
	ENSCLAT00000024679.1	UniProtKB/TrEMBL
InterPro	Nucleolar_protein_12	UniProtKB/TrEMBL
NCBI Gene	Nol12	ENTREZGENE
PANTHER	NUCLEOLAR PROTEIN 12	UniProtKB/TrEMBL
	PTHR14577	UniProtKB/TrEMBL
Pfam	Nop25	UniProtKB/TrEMBL
UniProt	A0A8C2W7Z3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations