Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3) - Rat Genome Database

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Gene: Ndufv3 (NADH:ubiquinone oxidoreductase subunit V3) Chinchilla lanigera
Analyze
Symbol: Ndufv3
Name: NADH:ubiquinone oxidoreductase subunit V3
RGD ID: 9008684
Description: INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH cataract 9 multiple types (ortholog); developmental and epileptic encephalopathy 30 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial respiratory chain complex I (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa; NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,026,057 - 39,039,347 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,029,943 - 39,039,425 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ndufv3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540739,026,057 - 39,039,347 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540739,029,943 - 39,039,425 (-)NCBIChiLan1.0ChiLan1.0
NDUFV3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382142,893,309 - 42,913,299 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2142,879,644 - 42,913,304 (+)EnsemblGRCh38hg38GRCh38
GRCh372144,313,419 - 44,333,409 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362143,186,447 - 43,202,842 (+)NCBINCBI36Build 36hg18NCBI36
Build 342143,186,446 - 43,202,841NCBI
Celera2129,462,954 - 29,479,344 (+)NCBICelera
Cytogenetic Map21q22.3NCBI
HuRef2129,728,932 - 29,766,787 (+)NCBIHuRef
CHM1_12143,874,271 - 43,890,607 (+)NCBICHM1_1
T2T-CHM13v2.02141,281,682 - 41,301,785 (+)NCBIT2T-CHM13v2.0
Ndufv3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391731,739,089 - 31,750,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1731,739,089 - 31,750,305 (+)EnsemblGRCm39 Ensembl
GRCm381731,520,115 - 31,531,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1731,520,115 - 31,531,331 (+)EnsemblGRCm38mm10GRCm38
MGSCv371731,657,060 - 31,668,271 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361731,248,868 - 31,260,036 (+)NCBIMGSCv36mm8
Celera1732,437,759 - 32,448,956 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1716.64NCBI
Ndufv3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8209,613,786 - 9,622,941 (+)NCBIGRCr8
mRatBN7.2209,612,462 - 9,621,622 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,916,312 - 45,916,638 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl209,612,431 - 9,623,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2010,313,049 - 10,322,444 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0209,674,226 - 9,683,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02010,144,578 - 10,153,725 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02010,265,826 - 10,275,298 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2010,265,806 - 10,275,304 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02012,455,139 - 12,464,611 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4209,951,109 - 9,960,265 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1209,951,416 - 9,960,492 (+)NCBI
Celera2011,126,335 - 11,135,486 (+)NCBICelera
Cytogenetic Map20p12NCBI
NDUFV3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22238,954,362 - 38,970,144 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12133,806,294 - 33,824,964 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02129,205,714 - 29,222,057 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12142,516,295 - 42,531,750 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2142,516,295 - 42,531,750 (+)Ensemblpanpan1.1panPan2
NDUFV3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13137,118,201 - 37,131,035 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3137,118,247 - 37,130,810 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3136,268,697 - 36,281,543 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03136,659,624 - 36,672,473 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13136,527,744 - 36,540,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03136,507,988 - 36,520,853 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03137,004,390 - 37,017,234 (+)NCBIUU_Cfam_GSD_1.0
Ndufv3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497136,353,922 - 36,365,099 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365001,102,694 - 1,113,978 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365001,102,724 - 1,113,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFV3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113206,111,337 - 206,123,987 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213216,572,830 - 216,576,885 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFV3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1286,750,630 - 86,759,744 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl286,750,648 - 86,759,826 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605414,722,078 - 14,736,492 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufv3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474527,777,507 - 27,786,939 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015352   ⟹   ENSCLAP00000015192
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540739,026,057 - 39,039,347 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000015353   ⟹   ENSCLAP00000015193
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540739,026,057 - 39,039,347 (-)Ensembl
RefSeq Acc Id: XM_005375804   ⟹   XP_005375861
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540739,029,943 - 39,039,425 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375805   ⟹   XP_005375862
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540739,029,943 - 39,039,419 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375806   ⟹   XP_005375863
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540739,029,943 - 39,039,411 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013505043   ⟹   XP_013360497
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540739,029,943 - 39,035,845 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375861 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375862 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375863 (Get FASTA)   NCBI Sequence Viewer  
  XP_013360497 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015192.1
  ENSCLAP00000015193
  ENSCLAP00000015193.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375861   ⟸   XM_005375804
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YQ70 (UniProtKB/TrEMBL),   A0A8C2VG93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375862   ⟸   XM_005375805
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005375863   ⟸   XM_005375806
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013360497   ⟸   XM_013505043
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VG93 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015193   ⟸   ENSCLAT00000015353
RefSeq Acc Id: ENSCLAP00000015192   ⟸   ENSCLAT00000015352


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010460 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015352.1 UniProtKB/TrEMBL
  ENSCLAT00000015353 ENTREZGENE
  ENSCLAT00000015353.1 UniProtKB/TrEMBL
InterPro NDUFV3 UniProtKB/TrEMBL
NCBI Gene LOC102007972 ENTREZGENE
PANTHER COMPLEX I-9KD UniProtKB/TrEMBL
  PTHR17117 UniProtKB/TrEMBL
Pfam NDUFV3 UniProtKB/TrEMBL
UniProt A0A8C2VG93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2YQ70 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ndufv3  NADH:ubiquinone oxidoreductase subunit V3    NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa  Symbol and/or name change 5135510 APPROVED
2015-08-25 Ndufv3  NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa  LOC102007972  NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial-like  Symbol and/or name change 5135510 APPROVED