Cldn10 (claudin 10) - Rat Genome Database

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Gene: Cldn10 (claudin 10) Chinchilla lanigera
Analyze
Symbol: Cldn10
Name: claudin 10
RGD ID: 9005810
Description: INVOLVED IN regulation of ion transport (ortholog); ASSOCIATED WITH Anal Atresia, Hypospadias, and Penoscrotal Inversion (ortholog); HELIX syndrome (ortholog); holoprosencephaly 5 (ortholog); FOUND IN bicellular tight junction (ortholog); cytoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: claudin-10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,483,217 - 14,597,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,483,217 - 14,597,912 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Cldn10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540414,483,217 - 14,597,938 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540414,483,217 - 14,597,912 (-)NCBIChiLan1.0ChiLan1.0
CLDN10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381395,433,755 - 95,579,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1395,433,604 - 95,579,759 (+)EnsemblGRCh38hg38GRCh38
GRCh371396,086,009 - 96,232,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361394,883,859 - 95,029,907 (+)NCBINCBI36hg18NCBI36
Build 341394,883,858 - 95,029,907NCBI
Celera1376,933,662 - 77,079,797 (+)NCBI
Cytogenetic Map13q32.1NCBI
HuRef1376,683,603 - 76,829,764 (+)NCBIHuRef
CHM1_11396,056,017 - 96,202,145 (+)NCBICHM1_1
T2T-CHM13v2.01394,638,308 - 94,784,309 (+)NCBI
Cldn10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914119,025,283 - 119,111,937 (+)NCBIGRCm39mm39
GRCm39 Ensembl14119,025,320 - 119,112,901 (+)Ensembl
GRCm3814118,787,871 - 118,874,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl14118,787,908 - 118,875,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv3714119,187,093 - 119,273,747 (+)NCBIGRCm37mm9NCBIm37
MGSCv3614117,701,416 - 117,788,616 (-)NCBImm8
Celera14117,349,989 - 117,436,610 (+)NCBICelera
Cytogenetic Map14E4NCBI
cM Map1462.55NCBI
Cldn10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21595,862,785 - 95,954,526 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1595,862,760 - 95,954,526 (+)Ensembl
Rnor_6.015104,026,590 - 104,115,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl15104,026,601 - 104,115,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.015107,450,003 - 107,539,150 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415103,699,243 - 103,793,405 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.115103,769,474 - 103,809,184 (+)NCBI
Celera1594,712,975 - 94,804,609 (+)NCBICelera
Cytogenetic Map15q24NCBI
CLDN10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11395,763,745 - 95,909,161 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1395,763,980 - 95,909,161 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01376,728,572 - 76,755,685 (+)NCBIMhudiblu_PPA_v0panPan3
CLDN10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12246,098,671 - 46,225,239 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2246,098,933 - 46,225,153 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2245,882,250 - 46,009,455 (+)NCBI
ROS_Cfam_1.02246,526,400 - 46,653,623 (+)NCBI
ROS_Cfam_1.0 Ensembl2246,627,780 - 46,653,447 (+)Ensembl
UMICH_Zoey_3.12246,190,438 - 46,316,829 (+)NCBI
UNSW_CanFamBas_1.02246,223,654 - 46,350,727 (+)NCBI
UU_Cfam_GSD_1.02246,230,094 - 46,356,645 (+)NCBI
Cldn10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945181,723,167 - 181,745,660 (+)NCBI
SpeTri2.0NW_00493647214,205,311 - 14,308,932 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1165,027,732 - 65,147,242 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11165,027,706 - 65,145,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21171,983,331 - 72,006,790 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1374,239,087 - 74,379,699 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl374,352,400 - 74,377,978 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604630,664,874 - 30,806,787 (+)NCBIVero_WHO_p1.0
Cldn10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248792,179,142 - 2,298,924 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248792,178,896 - 2,298,905 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003232   ⟹   ENSCLAP00000003168
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540414,483,217 - 14,503,568 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003233   ⟹   ENSCLAP00000003169
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540414,483,440 - 14,597,938 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003234   ⟹   ENSCLAP00000003170
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540414,483,440 - 14,597,702 (-)Ensembl
RefSeq Acc Id: XM_005374102   ⟹   XP_005374159
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540414,483,217 - 14,503,568 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005374103   ⟹   XP_005374160
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540414,483,217 - 14,597,912 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005374159 (Get FASTA)   NCBI Sequence Viewer  
  XP_005374160 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005374160   ⟸   XM_005374103
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005374159   ⟸   XM_005374102
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000003170   ⟸   ENSCLAT00000003234
RefSeq Acc Id: ENSCLAP00000003168   ⟸   ENSCLAT00000003232
RefSeq Acc Id: ENSCLAP00000003169   ⟸   ENSCLAT00000003233


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002269 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000003168 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000003169 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAP00000003170 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003232 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000003233 ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAT00000003234 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin10 UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
NCBI Gene Cldn10 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
  PTHR12002:SF13 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN10 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt A0A8C2UNH1_CHILA UniProtKB/TrEMBL
  A0A8C2UP67_CHILA UniProtKB/TrEMBL
  A0A8C2UU30_CHILA UniProtKB/TrEMBL