Gnpda1 (glucosamine-6-phosphate deaminase 1) - Rat Genome Database

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Gene: Gnpda1 (glucosamine-6-phosphate deaminase 1) Chinchilla lanigera
Analyze
Symbol: Gnpda1
Name: glucosamine-6-phosphate deaminase 1
RGD ID: 9003581
Description: ENCODES a protein that exhibits glucosamine-6-phosphate deaminase activity (ortholog); INVOLVED IN generation of precursor metabolites and energy (ortholog); glucosamine catabolic process (ortholog); UDP-N-acetylglucosamine biosynthetic process (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: glucosamine-6-phosphate isomerase 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,770,063 - 11,784,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,770,111 - 11,783,430 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gnpda1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,770,063 - 11,784,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,770,111 - 11,783,430 (+)NCBIChiLan1.0ChiLan1.0
GNPDA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385142,000,671 - 142,013,027 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,991,749 - 142,013,041 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,380,236 - 141,392,592 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,360,420 - 141,372,776 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,360,423 - 141,372,776NCBI
Celera5137,461,013 - 137,473,392 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,526,752 - 136,539,141 (-)NCBIHuRef
CHM1_15140,813,651 - 140,826,030 (-)NCBICHM1_1
T2T-CHM13v2.05142,530,868 - 142,543,257 (-)NCBIT2T-CHM13v2.0
Gnpda1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,460,588 - 38,472,052 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,460,588 - 38,472,056 (-)EnsemblGRCm39 Ensembl
GRCm381838,327,537 - 38,338,993 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,327,535 - 38,339,003 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,487,191 - 38,498,647 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,453,529 - 38,464,925 (-)NCBIMGSCv36mm8
Celera1839,671,431 - 39,682,887 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.23NCBI
Gnpda1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,416,599 - 30,428,630 (-)NCBIGRCr8
mRatBN7.21830,165,435 - 30,177,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,165,427 - 30,177,486 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,269,707 - 30,281,728 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01831,032,289 - 31,044,293 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,367,589 - 30,379,593 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,479,117 - 31,489,154 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,479,117 - 31,487,671 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,157,709 - 31,167,746 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1829,806,166 - 29,818,087 (-)NCBICelera
Cytogenetic Map18p11NCBI
GNPDA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,250,439 - 137,262,938 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,389,988 - 135,402,490 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,362,575 - 137,375,079 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,472,844 - 143,484,863 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,464,056 - 143,484,857 (-)Ensemblpanpan1.1panPan2
GNPDA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,938,682 - 36,949,657 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,939,750 - 36,948,966 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,991,312 - 34,002,522 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,393,556 - 37,404,762 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,393,566 - 37,404,726 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,468,445 - 34,479,655 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,279,307 - 35,290,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,086,854 - 36,098,064 (-)NCBIUU_Cfam_GSD_1.0
Gnpda1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,607,531 - 150,618,620 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493650412,181,544 - 12,192,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPDA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,604,362 - 143,615,990 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,604,362 - 143,616,037 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,805,866 - 149,817,544 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNPDA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,634,451 - 44,646,939 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,632,663 - 44,646,777 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,203,729 - 33,216,261 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnpda1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,222,458 - 1,235,842 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247741,222,451 - 1,235,897 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000020191   ⟹   ENSCLAP00000019998
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541511,770,063 - 11,784,188 (+)Ensembl
RefSeq Acc Id: XM_005380710   ⟹   XP_005380767
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,770,111 - 11,783,430 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005380711   ⟹   XP_005380768
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541511,770,160 - 11,783,430 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380767 (Get FASTA)   NCBI Sequence Viewer  
  XP_005380768 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000019998
  ENSCLAP00000019998.1
RefSeq Acc Id: XP_005380767   ⟸   XM_005380710
- UniProtKB: A0A8C2YSG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005380768   ⟸   XM_005380711
- UniProtKB: A0A8C2YSG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000019998   ⟸   ENSCLAT00000020191

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013704 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020191 ENTREZGENE
  ENSCLAT00000020191.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1360 UniProtKB/TrEMBL
InterPro Glc/Gal-6P_isomerase UniProtKB/TrEMBL
  Glucosamine6P_isomerase UniProtKB/TrEMBL
  Glucosamine6P_isomerase_CS UniProtKB/TrEMBL
  NagB/RpiA_transferase-like UniProtKB/TrEMBL
NCBI Gene Gnpda1 ENTREZGENE
PANTHER GLUCOSAMINE-6-PHOSPHATE ISOMERASE 1 UniProtKB/TrEMBL
  PTHR11280 UniProtKB/TrEMBL
Pfam Glucosamine_iso UniProtKB/TrEMBL
PROSITE GLC_GALNAC_ISOMERASE UniProtKB/TrEMBL
Superfamily-SCOP SSF100950 UniProtKB/TrEMBL
UniProt A0A8C2YSG7 ENTREZGENE, UniProtKB/TrEMBL