Atxn7l2 (ataxin 7 like 2) - Rat Genome Database

Name: Atxn7l2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Atxn7l2 (ataxin 7 like 2) Chinchilla lanigera

Analyze

Symbol:

Atxn7l2

Name:

ataxin 7 like 2

RGD ID:

9002739

Description:

ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ataxin 7-like 2; ataxin-7-like protein 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATXN7L2 (ataxin 7 like 2)	NCBI	Ortholog
Mus musculus (house mouse):	Atxn7l2 (ataxin 7-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Atxn7l2 (ataxin 7-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATXN7L2 (ataxin 7 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATXN7L2 (ataxin 7 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atxn7l2 (ataxin 7 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATXN7L2 (ataxin 7 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATXN7L2 (ataxin 7 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atxn7l2 (ataxin 7 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	12,904,829 - 12,914,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	12,904,829 - 12,913,351 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

hereditary spastic paraplegia 63 (ISO)

References

Genomics

Comparative Map Data

Atxn7l2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	12,904,829 - 12,914,694 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	12,904,829 - 12,913,351 (+)	NCBI	ChiLan1.0	ChiLan1.0

ATXN7L2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	109,483,905 - 109,492,804 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	109,483,479 - 109,492,804 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	110,026,527 - 110,035,426 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	109,828,084 - 109,836,879 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	109,738,602 - 109,747,396	NCBI
Celera	1	108,295,911 - 108,304,776 (+)	NCBI		Celera
Cytogenetic Map	1	p13.3	NCBI
HuRef	1	107,919,489 - 107,928,354 (+)	NCBI		HuRef
CHM1_1	1	110,141,425 - 110,150,290 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	109,516,680 - 109,525,579 (+)	NCBI		T2T-CHM13v2.0

Atxn7l2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	108,109,538 - 108,117,843 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	108,109,538 - 108,118,250 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	108,202,222 - 108,210,577 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	108,202,222 - 108,210,934 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	108,005,173 - 108,013,852 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	108,330,311 - 108,338,990 (-)	NCBI		MGSCv36	mm8
Celera	3	110,536,013 - 110,544,743 (-)	NCBI		Celera
Cytogenetic Map	3	F2.3	NCBI
cM Map	3	46.87	NCBI

Atxn7l2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	198,527,066 - 198,535,899 (-)	NCBI		GRCr8
mRatBN7.2	2	195,838,920 - 195,847,339 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	195,838,981 - 195,847,315 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	203,482,140 - 203,490,559 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	201,364,254 - 201,372,673 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	196,181,203 - 196,189,622 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	210,992,904 - 211,001,287 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	210,992,953 - 211,001,258 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	230,462,242 - 230,470,612 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	203,767,580 - 203,776,399 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	203,730,331 - 203,738,659 (-)	NCBI
Celera	2	188,483,792 - 188,492,175 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

ATXN7L2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	117,811,990 - 117,820,820 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	116,971,694 - 116,980,725 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	111,861,243 - 111,870,135 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	111,089,893 - 111,098,688 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	111,089,913 - 111,097,699 (+)	Ensembl	panpan1.1		panPan2

ATXN7L2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	42,366,974 - 42,375,878 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	42,366,874 - 42,375,846 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	45,141,839 - 45,150,754 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	42,697,559 - 42,706,476 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	42,697,576 - 42,706,478 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	42,430,354 - 42,439,264 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	42,388,210 - 42,397,127 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	42,823,201 - 42,832,120 (-)	NCBI		UU_Cfam_GSD_1.0

Atxn7l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	19,132,917 - 19,141,463 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936704	972,242 - 981,217 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936704	972,594 - 981,290 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATXN7L2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	110,637,237 - 110,646,041 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	110,637,233 - 110,646,081 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	121,095,593 - 121,104,444 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATXN7L2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	24,054,350 - 24,063,159 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	24,054,483 - 24,063,064 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	34,397,251 - 34,406,058 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atxn7l2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624772	5,211,062 - 5,220,222 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624772	5,211,616 - 5,220,295 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005388863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013516428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013516430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013516431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01033174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01066741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01254358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000009982 ⟹ ENSCLAP00000009853

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955435	12,904,829 - 12,914,694 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000009983 ⟹ ENSCLAP00000009854

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955435	12,906,691 - 12,913,351 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000009984 ⟹ ENSCLAP00000009855

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955435	12,906,835 - 12,913,221 (+)	Ensembl

RefSeq Acc Id:

XM_005388863 ⟹ XP_005388920

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	12,904,829 - 12,913,351 (+)	NCBI

Sequence:

show sequence

GGGCGGGCGCGCGTCCGCGGCGGTGATGGCGGTGCGTGAACGCGCGGCGGCAGCAATGGCCGCT
CTGGAGCGGCGGGTGCCGAGTCTCGATGACTTCGCGGGACAGAGCTGGAGCTCGTGGGTGGAGC
GGGCCGACCTGCCCGCGGCCGACGGGGCTGAACAGGAGGAAAGTAGCAAAAACATGAAGAAGTT
GGATGCCATGACCCTCATTAAAGAAGACATGTCCATCTTCGGGCACTGTCCAGCCCACGATGAC
TTCTATTTGGTTGTGTGTAACCACTGCAGCCAGGTGGTGAAGCCTCAAGCTTTCCAGAAACATT
GTGAAAGAAGACATGGGCCCCTCAGCAAGCTTTATGCCCGGGCCCCACCCCCACCTCCAGCCCC
TGCCAGCTCTCAGAAATGCCATGTAGTGAATGGGCAGGGCCCAGCTTGTAGGACCCCAGGTTCC
ACCAAAACCTCCTCCAGGGAGAAGGGCCAGGGGTCCCGGAGCCGTGGCCACCAGCCTCCTGAGA
AGACCCAGAAGGACAACCTCTGCCTTTTCGTGCCTGTGGTGAATCTTGAGAAGATGTCCAGTCT
CCCGAAGCCCGATGGACATGGAATCAGGGTGGCCCCACCCTCTGCTTTCCTCAGCCAGCCGAGC
GGCCTCCCCAAGGACTCCCCTGGAAAGGTGCCCATGGCTCCCCCCTCTAAGGAGCCTCCTGGCA
GAGACAGCATCGAGATAATTGCCGGTGAGGGCTCCAGTCATCGGGCCGAAGGCAGCCCTCTGGA
GAAGGAGGCTAGTGGGGCCAGGCTGCCCCCCAAAACCCACCGGAAGATGGCTCGGAAGGAGTGC
GACCTCAACAGGCAGTGTGGGGTCATAAATCCAGAGACCAAAAAGATCTGTACTCGCCTGCTGA
CCTGCAAGATCCACTCGGTGCATCAGCGCAGGGAGGTCCAGGGCCGGGCCAAGGACTTTGATGT
GCTAGTGGCAGAGCTGAAGGCCAACTCCCGCAAAGGGGAGTCTCCCAAGGAGAAGAGCCCAGGA
CGCAGAGAGCCAGCTCTCGAACGCCCCTCCCAGGAGCTTCCCTCCTCAGTCCAGGCTGTGGCAG
CAACAGCTACTCCCAGCAGCACCTTCTCTGCTCGATCCAAGCAGACCTACCCATACTGTGCACT
GCCCAGGTCCCGGGCCTCCTCTGAGAGTGAGTTGGATGATGAAAGCCCCTGTGGTGGTGATGGG
GACCCAGGCCTGTTCCCCTTCCCTCTGCCCCGGGGTGGGGCCCAGGCCTCCAGCGAGGAGAGTG
AGGAGGAGGGGACATCTGACGACCTCCACCTCCCCCCTGACTGCCATTATGCAACCCGGCCCCC
GCGGCCACAGGCGTTCTGCACCTTTGGGAGCCGCCTGGTGAGCCCAGGATGCTATGTGTTTAGC
CGCCGGCTGGACCGGTTCTGCTCTGCACTCAGCTCCATGCTGGAACGGCACCTCAGCTCACACA
TGTGGAAGAAGATCCCACCAGCGGCTGAACCTTCATCCCACCTTGTCAGCTCCGCCTTATCTGC
CCCACTGAGCCCATCCTCTATGGGCAGCTGCCCCCGACTTCCAGGCCCACCCCCTAGGCCTGCC
TGCCCGGCCTCCACACCCCCTAACAAGGACAGCCTTGTTCCCAGCTACCCTGCAGGCTCCCCCA
GTGTGGCAGCCGCCTGCAGTCAGGCGGAGTGCATGGGCGGCAGCCAGGCTATCACCTCACCACT
GCCTGCCAACACACCATCCCCATCCTTCAGCAAGCTGCCACCTTCCAAGGCCAGCAAGTCATCC
AAAGGCAAGGACGGGGTGGAGATGGAGGCTCCTTCTCGAAAGCGGAAGTTGTCCCCTGGCCCTA
CCACTTTCAAACGGACCTGCATCCTTGAACCCGCTGGAAAAGGCAAACCATCTGGCTGCCGGGG
GCTCTCAGCCAAGACTAAAACAGCCCTAGCCATGGGCCTTAATGGGACAGTGGGACCGAGAATG
AAGCGGGCAGGGCCCCTGGACTGTCGGGGTTCCCTTCATCCGCCCTCCACACCTGTCAAGGCTT
CTCAGCTGGAGAACCGGGGAGCCGCTGGACACCCGGCCAAGGCCCTGCCAACCAGCTGCCTCTC
TGAGGAGGAAGCAGCCAAGAAGCGGAAAAACCTGGCCACTTACTGCCGGCCAGTGAAGGCCAAG
CACTGTCAGGCCGGTGCCCCTGCCGACACGGCCTGCTCTGTGCGCCGCAAGAAGCCAGGCCCGG
CTCTGGCCTTTGAGGAGAAGTGCTCTACACTGAAGTCAAAAGCCCATTAACGAGAAAGTGCCTG
CCCACTGCAACGGAGCCGCCAGCACCTCTTCCCCTCCAGATCCGGGTCCCAGGCTGCTGCCGCT
TTTTATAACTTTATATTATTTTTTTTAAGAAAAAAAAAACTCTTTAAAATAC

hide sequence

RefSeq Acc Id:

XM_013516428 ⟹ XP_013371882

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	12,904,829 - 12,913,351 (+)	NCBI

Sequence:

show sequence

GGGCGGGCGCGCGTCCGCGGCGGTGATGGCGGTGCGTGAACGCGCGGCGGCAGCAATGGCCGCT
CTGGAGCGGCGGGTGCCGAGTCTCGATGACTTCGCGGGACAGAGCTGGAGCTCGTGGGTGGAGC
GGGCCGACCTGCCCGCGGCCGACGGGGCTGAACAGGAGGAAAGTAGCAAAAACATGAAGAAGTT
GGATGCCATGACCCTCATTAAAGAAGACATGTCCATCTTCGGGCACTGTCCAGCCCACGATGAC
TTCTATTTGGTTGTGTGTAACCACTGCAGCCAGGTGGTGAAGCCTCAAGCTTTCCAGAAACATT
GTGAAAGAAGACATGGGCCCCTCAGCAAGCTTTATGCCCGGGCCCCACCCCCACCTCCAGCCCC
TGCCAGCTCTCAGAAATGCCATGTAGTGAATGGGCAGGGCCCAGCTTGTAGGACCCCAGGTTCC
ACCAAAACCTCCTCCAGGGAGAAGGGCCAGGGGTCCCGGAGCCGTGGCCACCAGCCTCCTGAGA
AGACCCAGAAGGACAACCTCTGCCTTTTCGTGCCTGTGGTGAATCTTGAGAAGATGTCCAGTCT
CCCGAAGCCCGATGGACATGGAATCAGGGTGGCCCCACCCTCTGCTTTCCTCAGCCAGCCGAGC
GGCCTCCCCAAGGACTCCCCTGGAAAGGTGCCCATGGCTCCCCCCTCTAAGGAGCCTCCTGGCA
GAGACAGCATCGAGATAATTGCCGGTGAGGGCTCCAGTCATCGGGCCGAAGGCAGCCCTCTGGA
GAAGGAGGCTAGTGGGGCCAGGCTGCCCCCCAAAACCCACCGGAAGATGGCTCGGAAGGAGTGC
GACCTCAACAGGCAGTGTGGGGTCATAAATCCAGAGACCAAAAAGATCTGTACTCGCCTGCTGA
CCTGCAAGATCCACTCGGTGCATCAGCGCAGGGAGGTCCAGGGCCGGGCCAAGGACTTTGATGT
GCTAGTGGCAGAGCTGAAGGCCAACTCCCGCAAAGGGGAGTCTCCCAAGGAGAAGAGCCCAGGA
CGCAGAGAGCCAGCTCTCGAACGCCCCTCCCAGGAGCTTCCCTCCTCAGTCCAGGCTGTGGCAG
CAACAGCTACTCCCAGCAGCACCTTCTCTGCTCGATCCAAGCAGACCTACCCATACTGTGCACT
GCCCAGAGGCTGCGCTGGACCCCGGGGAGAGCCTGCCTTGCCGAAGGAGACACACACGCATCTC
TGCCTGTCCCGGGCCTCCTCTGAGAGTGAGTTGGATGATGAAAGCCCCTGTGGTGGTGATGGGG
ACCCAGGCCTGTTCCCCTTCCCTCTGCCCCGGGGTGGGGCCCAGGCCTCCAGCGAGGAGAGTGA
GGAGGAGGGGACATCTGACGACCTCCACCTCCCCCCTGACTGCCATTATGCAACCCGGCCCCCG
CGGCCACAGGCGTTCTGCACCTTTGGGAGCCGCCTGGTGAGCCCAGGATGCTATGTGTTTAGCC
GCCGGCTGGACCGGTTCTGCTCTGCACTCAGCTCCATGCTGGAACGGCACCTCAGCTCACACAT
GTGGAAGAAGATCCCACCAGCGGCTGAACCTTCATCCCACCTTGTCAGCTCCGCCTTATCTGCC
CCACTGAGCCCATCCTCTATGGGCAGCTGCCCCCGACTTCCAGGCCCACCCCCTAGGCCTGCCT
GCCCGGCCTCCACACCCCCTAACAAGGACAGCCTTGTTCCCAGCTACCCTGCAGGCTCCCCCAG
TGTGGCAGCCGCCTGCAGTCAGGCGGAGTGCATGGGCGGCAGCCAGGCTATCACCTCACCACTG
CCTGCCAACACACCATCCCCATCCTTCAGCAAGCTGCCACCTTCCAAGGCCAGCAAGTCATCCA
AAGGCAAGGACGGGGTGGAGATGGAGGCTCCTTCTCGAAAGCGGAAGTTGTCCCCTGGCCCTAC
CACTTTCAAACGGACCTGCATCCTTGAACCCGCTGGAAAAGGCAAACCATCTGGCTGCCGGGGG
CTCTCAGCCAAGACTAAAACAGCCCTAGCCATGGGCCTTAATGGGACAGTGGGACCGAGAATGA
AGCGGGCAGGGCCCCTGGACTGTCGGGGTTCCCTTCATCCGCCCTCCACACCTGTCAAGGCTTC
TCAGCTGGAGAACCGGGGAGCCGCTGGACACCCGGCCAAGGCCCTGCCAACCAGCTGCCTCTCT
GAGGAGGAAGCAGCCAAGAAGCGGAAAAACCTGGCCACTTACTGCCGGCCAGTGAAGGCCAAGC
ACTGTCAGGCCGGTGCCCCTGCCGACACGGCCTGCTCTGTGCGCCGCAAGAAGCCAGGCCCGGC
TCTGGCCTTTGAGGAGAAGTGCTCTACACTGAAGTCAAAAGCCCATTAACGAGAAAGTGCCTGC
CCACTGCAACGGAGCCGCCAGCACCTCTTCCCCTCCAGATCCGGGTCCCAGGCTGCTGCCGCTT
TTTATAACTTTATATTATTTTTTTTAAGAAAAAAAAAACTCTTTAAAATAC

hide sequence

RefSeq Acc Id:

XM_013516430 ⟹ XP_013371884

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	12,904,829 - 12,913,351 (+)	NCBI

Sequence:

show sequence

GGGCGGGCGCGCGTCCGCGGCGGTGATGGCGGTGCGTGAACGCGCGGCGGCAGCAATGGCCGCT
CTGGAGCGGCGGGTGCCGAGTCTCGATGACTTCGCGGGACAGAGCTGGAGCTCGTGGGTGGAGC
GGGCCGACCTGCCCGCGGCCGACGGGGCTGAACAGGAGGAAAGTAGCAAAAACATGAAGAAGTT
GGATGCCATGACCCTCATTAAAGAAGACATGTCCATCTTCGGGCACTGTCCAGCCCACGATGAC
TTCTATTTGGTTGTGTGTAACCACTGCAGCCAGGTGGTGAAGCCTCAAGCTTTCCAGAAACATT
GTGAAAGAAGACATGGGCCCCTCAGCAAGCTTTATGCCCGGGCCCCACCCCCACCTCCAGCCCC
TGCCAGCTCTCAGAAATGCCATGTAGTGAATGGGCAGGGCCCAGCTTGTAGGACCCCAGGTTCC
ACCAAAACCTCCTCCAGGGAGAAGGGCCAGGGGTCCCGGAGCCGTGGCCACCAGCCTCCTGAGA
AGACCCAGAAGGACAACCTCTGCCAGCCGAGCGGCCTCCCCAAGGACTCCCCTGGAAAGGTGCC
CATGGCTCCCCCCTCTAAGGAGCCTCCTGGCAGAGACAGCATCGAGATAATTGCCGGTGAGGGC
TCCAGTCATCGGGCCGAAGGCAGCCCTCTGGAGAAGGAGGCTAGTGGGGCCAGGCTGCCCCCCA
AAACCCACCGGAAGATGGCTCGGAAGGAGTGCGACCTCAACAGGCAGTGTGGGGTCATAAATCC
AGAGACCAAAAAGATCTGTACTCGCCTGCTGACCTGCAAGATCCACTCGGTGCATCAGCGCAGG
GAGGTCCAGGGCCGGGCCAAGGACTTTGATGTGCTAGTGGCAGAGCTGAAGGCCAACTCCCGCA
AAGGGGAGTCTCCCAAGGAGAAGAGCCCAGGACGCAGAGAGCCAGCTCTCGAACGCCCCTCCCA
GGAGCTTCCCTCCTCAGTCCAGGCTGTGGCAGCAACAGCTACTCCCAGCAGCACCTTCTCTGCT
CGATCCAAGCAGACCTACCCATACTGTGCACTGCCCAGAGGCTGCGCTGGACCCCGGGGAGAGC
CTGCCTTGCCGAAGGAGACACACACGCATCTCTGCCTGTCCCGGGCCTCCTCTGAGAGTGAGTT
GGATGATGAAAGCCCCTGTGGTGGTGATGGGGACCCAGGCCTGTTCCCCTTCCCTCTGCCCCGG
GGTGGGGCCCAGGCCTCCAGCGAGGAGAGTGAGGAGGAGGGGACATCTGACGACCTCCACCTCC
CCCCTGACTGCCATTATGCAACCCGGCCCCCGCGGCCACAGGCGTTCTGCACCTTTGGGAGCCG
CCTGGTGAGCCCAGGATGCTATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTCTGCACTCAGC
TCCATGCTGGAACGGCACCTCAGCTCACACATGTGGAAGAAGATCCCACCAGCGGCTGAACCTT
CATCCCACCTTGTCAGCTCCGCCTTATCTGCCCCACTGAGCCCATCCTCTATGGGCAGCTGCCC
CCGACTTCCAGGCCCACCCCCTAGGCCTGCCTGCCCGGCCTCCACACCCCCTAACAAGGACAGC
CTTGTTCCCAGCTACCCTGCAGGCTCCCCCAGTGTGGCAGCCGCCTGCAGTCAGGCGGAGTGCA
TGGGCGGCAGCCAGGCTATCACCTCACCACTGCCTGCCAACACACCATCCCCATCCTTCAGCAA
GCTGCCACCTTCCAAGGCCAGCAAGTCATCCAAAGGCAAGGACGGGGTGGAGATGGAGGCTCCT
TCTCGAAAGCGGAAGTTGTCCCCTGGCCCTACCACTTTCAAACGGACCTGCATCCTTGAACCCG
CTGGAAAAGGCAAACCATCTGGCTGCCGGGGGCTCTCAGCCAAGACTAAAACAGCCCTAGCCAT
GGGCCTTAATGGGACAGTGGGACCGAGAATGAAGCGGGCAGGGCCCCTGGACTGTCGGGGTTCC
CTTCATCCGCCCTCCACACCTGTCAAGGCTTCTCAGCTGGAGAACCGGGGAGCCGCTGGACACC
CGGCCAAGGCCCTGCCAACCAGCTGCCTCTCTGAGGAGGAAGCAGCCAAGAAGCGGAAAAACCT
GGCCACTTACTGCCGGCCAGTGAAGGCCAAGCACTGTCAGGCCGGTGCCCCTGCCGACACGGCC
TGCTCTGTGCGCCGCAAGAAGCCAGGCCCGGCTCTGGCCTTTGAGGAGAAGTGCTCTACACTGA
AGTCAAAAGCCCATTAACGAGAAAGTGCCTGCCCACTGCAACGGAGCCGCCAGCACCTCTTCCC
CTCCAGATCCGGGTCCCAGGCTGCTGCCGCTTTTTATAACTTTATATTATTTTTTTTAAGAAAA
AAAAAACTCTTTAAAATAC

hide sequence

RefSeq Acc Id:

XM_013516431 ⟹ XP_013371885

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955435	12,904,829 - 12,913,351 (+)	NCBI

Sequence:

show sequence

GGGCGGGCGCGCGTCCGCGGCGGTGATGGCGGTGCGTGAACGCGCGGCGGCAGCAATGGCCGCT
CTGGAGCGGCGGGTGCCGAGTCTCGATGACTTCGCGGGACAGAGCTGGAGCTCGTGGGTGGAGC
GGGCCGACCTGCCCGCGGCCGACGGGGCTGAACAGGAGGAAAGTAGCAAAAACATGAAGAAGTT
GGATGCCATGACCCTCATTAAAGAAGACATGTCCATCTTCGGGCACTGTCCAGCCCACGATGAC
TTCTATTTGGTTGTGTGTAACCACTGCAGCCAGGTGGTGAAGCCTCAAGCTTTCCAGAAACATT
GTGAAAGAAGACATGGGCCCCTCAGCAAGCTTTATGCCCGGGCCCCACCCCCACCTCCAGCCCC
TGCCAGCTCTCAGAAATGCCATGTAGTGAATGGGCAGGGCCCAGCTTGTAGGACCCCAGGTTCC
ACCAAAACCTCCTCCAGGGAGAAGGGCCAGGGGTCCCGGAGCCGTGGCCACCAGCCTCCTGAGA
AGACCCAGAAGGACAACCTCTGCCAGCCGAGCGGCCTCCCCAAGGACTCCCCTGGAAAGGTGCC
CATGGCTCCCCCCTCTAAGGAGCCTCCTGGCAGAGACAGCATCGAGATAATTGCCGGTGAGGGC
TCCAGTCATCGGGCCGAAGGCAGCCCTCTGGAGAAGGAGGCTAGTGGGGCCAGGCTGCCCCCCA
AAACCCACCGGAAGATGGCTCGGAAGGAGTGCGACCTCAACAGGCAGTGTGGGGTCATAAATCC
AGAGACCAAAAAGATCTGTACTCGCCTGCTGACCTGCAAGATCCACTCGGTGCATCAGCGCAGG
GAGGTCCAGGGCCGGGCCAAGGACTTTGATGTGCTAGTGGCAGAGCTGAAGGCCAACTCCCGCA
AAGGGGAGTCTCCCAAGGAGAAGAGCCCAGGACGCAGAGAGCCAGCTCTCGAACGCCCCTCCCA
GGAGCTTCCCTCCTCAGTCCAGGCTGTGGCAGCAACAGCTACTCCCAGCAGCACCTTCTCTGCT
CGATCCAAGCAGACCTACCCATACTGTGCACTGCCCAGGTCCCGGGCCTCCTCTGAGAGTGAGT
TGGATGATGAAAGCCCCTGTGGTGGTGATGGGGACCCAGGCCTGTTCCCCTTCCCTCTGCCCCG
GGGTGGGGCCCAGGCCTCCAGCGAGGAGAGTGAGGAGGAGGGGACATCTGACGACCTCCACCTC
CCCCCTGACTGCCATTATGCAACCCGGCCCCCGCGGCCACAGGCGTTCTGCACCTTTGGGAGCC
GCCTGGTGAGCCCAGGATGCTATGTGTTTAGCCGCCGGCTGGACCGGTTCTGCTCTGCACTCAG
CTCCATGCTGGAACGGCACCTCAGCTCACACATGTGGAAGAAGATCCCACCAGCGGCTGAACCT
TCATCCCACCTTGTCAGCTCCGCCTTATCTGCCCCACTGAGCCCATCCTCTATGGGCAGCTGCC
CCCGACTTCCAGGCCCACCCCCTAGGCCTGCCTGCCCGGCCTCCACACCCCCTAACAAGGACAG
CCTTGTTCCCAGCTACCCTGCAGGCTCCCCCAGTGTGGCAGCCGCCTGCAGTCAGGCGGAGTGC
ATGGGCGGCAGCCAGGCTATCACCTCACCACTGCCTGCCAACACACCATCCCCATCCTTCAGCA
AGCTGCCACCTTCCAAGGCCAGCAAGTCATCCAAAGGCAAGGACGGGGTGGAGATGGAGGCTCC
TTCTCGAAAGCGGAAGTTGTCCCCTGGCCCTACCACTTTCAAACGGACCTGCATCCTTGAACCC
GCTGGAAAAGGCAAACCATCTGGCTGCCGGGGGCTCTCAGCCAAGACTAAAACAGCCCTAGCCA
TGGGCCTTAATGGGACAGTGGGACCGAGAATGAAGCGGGCAGGGCCCCTGGACTGTCGGGGTTC
CCTTCATCCGCCCTCCACACCTGTCAAGGCTTCTCAGCTGGAGAACCGGGGAGCCGCTGGACAC
CCGGCCAAGGCCCTGCCAACCAGCTGCCTCTCTGAGGAGGAAGCAGCCAAGAAGCGGAAAAACC
TGGCCACTTACTGCCGGCCAGTGAAGGCCAAGCACTGTCAGGCCGGTGCCCCTGCCGACACGGC
CTGCTCTGTGCGCCGCAAGAAGCCAGGCCCGGCTCTGGCCTTTGAGGAGAAGTGCTCTACACTG
AAGTCAAAAGCCCATTAACGAGAAAGTGCCTGCCCACTGCAACGGAGCCGCCAGCACCTCTTCC
CCTCCAGATCCGGGTCCCAGGCTGCTGCCGCTTTTTATAACTTTATATTATTTTTTTTAAGAAA
AAAAAAACTCTTTAAAATAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005388920	(Get FASTA)	NCBI Sequence Viewer
	XP_013371882	(Get FASTA)	NCBI Sequence Viewer
	XP_013371884	(Get FASTA)	NCBI Sequence Viewer
	XP_013371885	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009853
	ENSCLAP00000009853.1
	ENSCLAP00000009854
	ENSCLAP00000009854.1
	ENSCLAP00000009855.1

RefSeq Acc Id:	XP_005388920 ⟸ XM_005388863
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V4G8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAEQEESSKNMKKLDAMTLIKE DMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHV VNGQGPACRTPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSLPKPDGHGI RVAPPSAFLSQPSGLPKDSPGKVPMAPPSKEPPGRDSIEIIAGEGSSHRAEGSPLEKEASGARL PPKTHRKMARKECDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVQGRAKDFDVLVAELKAN SRKGESPKEKSPGRREPALERPSQELPSSVQAVAATATPSSTFSARSKQTYPYCALPRSRASSE SELDDESPCGGDGDPGLFPFPLPRGGAQASSEESEEEGTSDDLHLPPDCHYATRPPRPQAFCTF GSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPSSHLVSSALSAPLSPSSMG SCPRLPGPPPRPACPASTPPNKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPS FSKLPPSKASKSSKGKDGVEMEAPSRKRKLSPGPTTFKRTCILEPAGKGKPSGCRGLSAKTKTA LAMGLNGTVGPRMKRAGPLDCRGSLHPPSTPVKASQLENRGAAGHPAKALPTSCLSEEEAAKKR KNLATYCRPVKAKHCQAGAPADTACSVRRKKPGPALAFEEKCSTLKSKAH hide sequence

RefSeq Acc Id:	XP_013371882 ⟸ XM_013516428
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2YMM6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAEQEESSKNMKKLDAMTLIKE DMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHV VNGQGPACRTPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSLPKPDGHGI RVAPPSAFLSQPSGLPKDSPGKVPMAPPSKEPPGRDSIEIIAGEGSSHRAEGSPLEKEASGARL PPKTHRKMARKECDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVQGRAKDFDVLVAELKAN SRKGESPKEKSPGRREPALERPSQELPSSVQAVAATATPSSTFSARSKQTYPYCALPRGCAGPR GEPALPKETHTHLCLSRASSESELDDESPCGGDGDPGLFPFPLPRGGAQASSEESEEEGTSDDL HLPPDCHYATRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAA EPSSHLVSSALSAPLSPSSMGSCPRLPGPPPRPACPASTPPNKDSLVPSYPAGSPSVAAACSQA ECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEMEAPSRKRKLSPGPTTFKRTCIL EPAGKGKPSGCRGLSAKTKTALAMGLNGTVGPRMKRAGPLDCRGSLHPPSTPVKASQLENRGAA GHPAKALPTSCLSEEEAAKKRKNLATYCRPVKAKHCQAGAPADTACSVRRKKPGPALAFEEKCS TLKSKAH hide sequence

RefSeq Acc Id:	XP_013371884 ⟸ XM_013516430
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2YMM6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAEQEESSKNMKKLDAMTLIKE DMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHV VNGQGPACRTPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCQPSGLPKDSPGKVPMAPPSKEP PGRDSIEIIAGEGSSHRAEGSPLEKEASGARLPPKTHRKMARKECDLNRQCGVINPETKKICTR LLTCKIHSVHQRREVQGRAKDFDVLVAELKANSRKGESPKEKSPGRREPALERPSQELPSSVQA VAATATPSSTFSARSKQTYPYCALPRGCAGPRGEPALPKETHTHLCLSRASSESELDDESPCGG DGDPGLFPFPLPRGGAQASSEESEEEGTSDDLHLPPDCHYATRPPRPQAFCTFGSRLVSPGCYV FSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPSSHLVSSALSAPLSPSSMGSCPRLPGPPPR PACPASTPPNKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASK SSKGKDGVEMEAPSRKRKLSPGPTTFKRTCILEPAGKGKPSGCRGLSAKTKTALAMGLNGTVGP RMKRAGPLDCRGSLHPPSTPVKASQLENRGAAGHPAKALPTSCLSEEEAAKKRKNLATYCRPVK AKHCQAGAPADTACSVRRKKPGPALAFEEKCSTLKSKAH hide sequence

RefSeq Acc Id:	XP_013371885 ⟸ XM_013516431
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C2V4G8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAEQEESSKNMKKLDAMTLIKE DMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHV VNGQGPACRTPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCQPSGLPKDSPGKVPMAPPSKEP PGRDSIEIIAGEGSSHRAEGSPLEKEASGARLPPKTHRKMARKECDLNRQCGVINPETKKICTR LLTCKIHSVHQRREVQGRAKDFDVLVAELKANSRKGESPKEKSPGRREPALERPSQELPSSVQA VAATATPSSTFSARSKQTYPYCALPRSRASSESELDDESPCGGDGDPGLFPFPLPRGGAQASSE ESEEEGTSDDLHLPPDCHYATRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLS SHMWKKIPPAAEPSSHLVSSALSAPLSPSSMGSCPRLPGPPPRPACPASTPPNKDSLVPSYPAG SPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEMEAPSRKRKLSP GPTTFKRTCILEPAGKGKPSGCRGLSAKTKTALAMGLNGTVGPRMKRAGPLDCRGSLHPPSTPV KASQLENRGAAGHPAKALPTSCLSEEEAAKKRKNLATYCRPVKAKHCQAGAPADTACSVRRKKP GPALAFEEKCSTLKSKAH hide sequence

RefSeq Acc Id:

ENSCLAP00000009853 ⟸ ENSCLAT00000009982

RefSeq Acc Id:

ENSCLAP00000009854 ⟸ ENSCLAT00000009983

RefSeq Acc Id:

ENSCLAP00000009855 ⟸ ENSCLAT00000009984

Protein Domains

SCA7

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006826	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009982	ENTREZGENE
	ENSCLAT00000009982.1	UniProtKB/TrEMBL
	ENSCLAT00000009983	ENTREZGENE
	ENSCLAT00000009983.1	UniProtKB/TrEMBL
	ENSCLAT00000009984.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.1270	UniProtKB/TrEMBL
InterPro	SCA7_dom	UniProtKB/TrEMBL
NCBI Gene	Atxn7l2	ENTREZGENE
PANTHER	ATAXIN 7 RELATED	UniProtKB/TrEMBL
	ATAXIN-7-LIKE PROTEIN 2	UniProtKB/TrEMBL
Pfam	SCA7	UniProtKB/TrEMBL
PROSITE	SCA7	UniProtKB/TrEMBL
UniProt	A0A8C2V4G8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2VAF6_CHILA	UniProtKB/TrEMBL
	A0A8C2YMM6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Atxn7l2	ataxin 7 like 2		ataxin 7-like 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar