Kif16b (kinesin family member 16B) - Rat Genome Database

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Gene: Kif16b (kinesin family member 16B) Chinchilla lanigera
Analyze
Symbol: Kif16b
Name: kinesin family member 16B
RGD ID: 9002193
Description: ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); early endosome to late endosome transport (ortholog); endoderm development (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); muscular atrophy (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: kinesin-like protein KIF16B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541525,447,539 - 25,740,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Kif16b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541525,447,539 - 25,740,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBIChiLan1.0ChiLan1.0
KIF16B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382016,272,104 - 16,573,448 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2016,272,104 - 16,573,448 (-)EnsemblGRCh38hg38GRCh38
GRCh372016,252,749 - 16,554,093 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362016,200,749 - 16,502,078 (-)NCBINCBI36Build 36hg18NCBI36
Celera2016,327,872 - 16,629,179 (-)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2016,214,467 - 16,516,712 (-)NCBIHuRef
CHM1_12016,252,472 - 16,554,080 (-)NCBICHM1_1
T2T-CHM13v2.02016,322,635 - 16,624,561 (-)NCBIT2T-CHM13v2.0
Kif16b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392142,459,399 - 142,743,535 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2142,459,394 - 142,743,451 (-)EnsemblGRCm39 Ensembl
GRCm382142,618,340 - 142,901,609 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2142,617,474 - 142,901,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv372142,444,081 - 142,727,200 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362142,309,786 - 142,592,905 (-)NCBIMGSCv36mm8
Celera2143,799,300 - 144,080,607 (-)NCBICelera
Cytogenetic Map2G1NCBI
cM Map270.67NCBI
Kif16b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83150,428,233 - 150,707,755 (-)NCBIGRCr8
mRatBN7.23129,974,692 - 130,254,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3129,974,800 - 130,254,019 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3133,858,582 - 134,149,362 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03142,442,587 - 142,733,395 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03140,145,790 - 140,436,578 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03136,596,621 - 136,936,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3136,657,480 - 136,936,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03143,103,727 - 143,381,598 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43130,967,515 - 131,250,402 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13130,874,500 - 131,130,642 (-)NCBI
Celera3128,908,978 - 129,180,308 (-)NCBICelera
Cytogenetic Map3q41NCBI
KIF16B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22117,158,926 - 17,461,659 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12017,155,768 - 17,458,469 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02016,229,429 - 16,532,735 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12016,210,821 - 16,512,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2016,210,821 - 16,512,618 (-)Ensemblpanpan1.1panPan2
KIF16B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1246,260,558 - 6,576,544 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl246,261,553 - 6,575,845 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha246,126,588 - 6,442,971 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0246,666,622 - 6,989,878 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1246,276,871 - 6,576,736 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,372,345 - 6,688,664 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0246,648,582 - 6,963,507 (+)NCBIUU_Cfam_GSD_1.0
Kif16b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640155,012,499 - 155,294,440 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364853,443,878 - 3,726,174 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364853,443,878 - 3,728,613 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIF16B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1724,882,142 - 25,186,703 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11724,882,139 - 25,188,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21728,210,127 - 28,417,272 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIF16B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1245,189,908 - 45,495,837 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl245,189,756 - 45,495,725 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660545,562,674 - 5,874,409 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kif16b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474117,424,335 - 17,750,531 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018148   ⟹   ENSCLAP00000017970
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541525,447,539 - 25,740,775 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000018149   ⟹   ENSCLAP00000017971
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541525,447,539 - 25,740,775 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000018150   ⟹   ENSCLAP00000017972
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541525,452,221 - 25,740,525 (-)Ensembl
RefSeq Acc Id: XM_005380898   ⟹   XP_005380955
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512329   ⟹   XP_013367783
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541525,551,187 - 25,740,697 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512330   ⟹   XP_013367784
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512331   ⟹   XP_013367785
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541525,449,734 - 25,740,697 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013512332   ⟹   XP_013367786
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541525,553,247 - 25,740,697 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005380955   ⟸   XM_005380898
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VV65 (UniProtKB/TrEMBL),   A0A8C2VMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367785   ⟸   XM_013512331
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367784   ⟸   XM_013512330
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367783   ⟸   XM_013512329
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013367786   ⟸   XM_013512332
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VMZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017970   ⟸   ENSCLAT00000018148
RefSeq Acc Id: ENSCLAP00000017971   ⟸   ENSCLAT00000018149
RefSeq Acc Id: ENSCLAP00000017972   ⟸   ENSCLAT00000018150
Protein Domains
Kinesin motor   PX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012327 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018148.1 UniProtKB/TrEMBL
  ENSCLAT00000018149 ENTREZGENE
  ENSCLAT00000018149.1 UniProtKB/TrEMBL
  ENSCLAT00000018150.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/TrEMBL
NCBI Gene Kif16b ENTREZGENE
PANTHER KINESIN-LIKE PROTEIN KIF1C ISOFORM X1 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
  PS50195 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A8C2VMZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VQ42_CHILA UniProtKB/TrEMBL
  A0A8C2VV65 ENTREZGENE, UniProtKB/TrEMBL